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Properties
| Property Name | Value |
|---|
| TranscriptId | 593323 |
| Track | FilteredModels2 |
| ProteinId | 593237 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:148580..150837 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5950 ID=mRNA_5950|Name=jgi.p|Nanoce1779_2|593237|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
CAGCATACATTACACAAGCGCAGGCGAGACAACCCAGCATGACCACCATC
TCGTAAAGCCTTACAATCCGCGGCGCCCGAAAGCCTTTCAGCCCAAGCCA
CCGGATGCAAGTATGCGCTGTTATCATCGAGTCCTCTCCCCCGTCATGCT
CCTGCTCCTTGCCCTTCAAGCCGCCTTCCTAGTTCTTACATCGGCCGATG
CTGCCGCTGCGAGAGGTGTAGGGTCAAGCTCATCCTCTTCAACACTACCG
GCGCCCTTTAACTCGCCAGATGTACATCCAAGCAAAAACGCCGTCAACCC
TCCCCCACCGCCCGCCTTCGCCTCCTCCTCCGCCCTTCCCCGACGACGCT
GGACAGACAAGCGCGCCCCATCTTCAACCACATCTTATTCTGCATCTGCA
AAGACCGACTCAAGGCTACTGCAAGGCGTTCACGGGACCCGAAGTATTAC
AAGCATCGGCACCGGCATCCTCCTCCCCCTCTTTCTCCTCCTCCAACCCT
CCCACTCCTCCCCCTTCGACCCCCATCCCCTGCCTCTTCTCCTTGGTCTC
TGCTTTTTTAACGGCTGGTATATTCGCGTCACAGACCATAAAAAACACCT
AGCGTTTGCCCTTATCGTCGGGTCATTCAAACATCCAGGGGCGAACTCCT
ACACTGAACATTATGTTGCTCTCGTCTACTCAGATAAGCAGGGCAATATG
CACACCGCTCACGCCTTCCCCGATCCCGACTCCGTGACAATCGACATGGA
CAGCGAGGGGTACGTGGGTGTGCCTTCTAACTTCACTTGGCGCTCAGAAG
AAGTTGGCGAATTGCACATAGGGGGAAACGAAGGTCATTTTGATTTCACC
CTGCCGGGGATCGCGGCGGTGGCGACGTTTCATGACAGGGTGCCATGGTG
TGAAAAGAGGCCTGAGATGGGTGGACCGGAGGGATGGCTCGGCAGCACCC
CCCTCCTCCCCTGTCATTACTTTGTCCACTCCCTCGCATCCCGCACCACC
TACCGCCTCCGCCTTAGGAATAAGCCCTCCTCTTCCTCCTCCTCCCCTCC
GTCCCCCCCTCCATCCTCCCATCTCTCCGGGCAGGGCTATGCCCACATGG
AAAGCAATTACGGGAACCACTTCCCTTCCGGCTGGCTATGGTGCAATGCC
ATTTCGCCTCAGAGGGAAGTGAAGCTCCTTATGGTGGGAGGCAAATTTGA
GATCGGGCCAACGGCTCCTACCACATGGATCGTTGCATTCAGGTCCCCAC
GTTTTGAATGGACGTTTCGGACCACGGACTTGGACAAGGTAACGGCAAGG
CTTGACTATAGCACACGAACATTGAGATTGGAAGCCCGGTCAAGATGCGG
CCGCCGAAGGATAGAGGTGATGATGGTTGCGCCCCCAGGCTCCTTTGGCC
CTCCACTCTACGTCCCTACCCGAGGGGGCTTCTCGTGCTTGCCCGGCTGC
CGGGAGTCGTTCACGGCCACAGCGCATATCAAGGCGGTGGACGAGGGGGG
GCGCGGAGGGGGAAGGAGGATTGTTTTGGAAGAGGTGTGTGAGGTGCCTT
TGGCGGCACTGGAGCTGGGAGGGGCGTTGCAGCGATTGTGAAGAGGGGGG
AAGGAGGGAGGAAGAAAGGGATGGATGCACATAGATTGACAAAAGACGCA
CGTGTACCACACGCCAGCGTAACACGGCAGGCACGATGACTGCAATTTCT
ATTTTTAAACAGAACAAAAAGATTACCAAATGCGAATATTTTATTTGGGG
GAAATGCGACAAAAGAAGCTGGCGCCTGCTTTATCTGAGTCTCTATGAAT
ATAAATAAATAATTATTCTGAATCTTCCTCCTCCTTCTGAAGGCTTCGGA
CCACGCACCTGGGTTGTGATGATGGCAATGGTAAAAAGAAAGGAGAAAAT
CGGCTTTGAAAAAAAAAACTCAATCGATAATTAATATCCATAAAATGCAG
CGGCAGCCGCAGTGC back to topprotein sequence of jgi.p|Nanoce1779_2|593237 >mRNA_5950-protein ID=mRNA_5950-protein|Name=jgi.p|Nanoce1779_2|593237|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MRCYHRVLSPVMLLLLALQAAFLVLTSADAAAARGVGSSSSSSTLPAPFN
SPDVHPSKNAVNPPPPPAFASSSALPRRRWTDKRAPSSTTSYSASAKTDS
RLLQGVHGTRSITSIGTGILLPLFLLLQPSHSSPFDPHPLPLLLGLCFFN
GWYIRVTDHKKHLAFALIVGSFKHPGANSYTEHYVALVYSDKQGNMHTAH
AFPDPDSVTIDMDSEGYVGVPSNFTWRSEEVGELHIGGNEGHFDFTLPGI
AAVATFHDRVPWCEKRPEMGGPEGWLGSTPLLPCHYFVHSLASRTTYRLR
LRNKPSSSSSSPPSPPPSSHLSGQGYAHMESNYGNHFPSGWLWCNAISPQ
REVKLLMVGGKFEIGPTAPTTWIVAFRSPRFEWTFRTTDLDKVTARLDYS
TRTLRLEARSRCGRRRIEVMMVAPPGSFGPPLYVPTRGGFSCLPGCRESF
TATAHIKAVDEGGRGGGRRIVLEEVCEVPLAALELGGALQRL* back to topmRNA from alignment at scaffold_14:148580..150837- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5950 ID=mRNA_5950|Name=jgi.p|Nanoce1779_2|593237|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at scaffold_14:148580..150837- (Nannochloropsis oceanica)
CAGCATACATTACACAAGCGCAGGCGAGACAACCCAGCATGACCACCATC
TCGTAAAGCCTTACAATCCGCGGCGCCCGAAAGCCTTTCAGCCCAAGCCA
CCGGATGCAAGTATGCGCTGTTATCATCGAGTCCTCTCCCCCGTCATGCT
CCTGCTCCTTGCCCTTCAAGCCGCCTTCCTAGTTCTTACATCGGCCGATG
CTGCCGCTGCGAGAGGTGTAGGGTCAAGCTCATCCTCTTCAACACTACCG
GCGCCCTTTAACTCGCCAGATGTACATCCAAGCAAAAACGCCGTCAACCC
TCCCCCACCGCCCGCCTTCGCCTCCTCCTCCGCCCTTCCCCGACGACGCT
GGACAGACAAGCGCGCCCCATCTTCAACCACATCTTATTCTGCATCTGCA
AAGACCGACTCAAGGCTACTGCAAGGCGTTCACGGGACCCGAAGTATTAC
AAGCATCGGCACCGGCATCCTCCTCCCCCTCTTTCTCCTCCTCCAACCCT
CCCACTCCTCCCCCTTCGACCCCCATCCCCTGCCTCTTCTCCTTGGTCTC
TGCTTTTTTAACGGCTGGTATATTCGCGTCACAGACCATAAAAAACACCT
AGCGTTTGCCCTTATCGTCGGGTCATTCAAACATCCAGGGGCGAACTCCT
ACACTGAACATTATGTTGCTCTCGTCTACTCAGATAAGCAGGGCAATATG
CACACCGCTCACGCCTTCCCCGATCCCGACTCCGTGACAATCGACATGGA
CAGCGAGGGGTACGTGGGTGTGCCTTCTAACTTCACTTGGCGCTCAGAAG
AAGTTGGCGAATTGCACATAGGGGGAAACGAAGGTCATTTTGATTTCACC
CTGCCGGGGATCGCGGCGGTGGCGACGTTTCATGACAGGGTGCCATGGTG
TGAAAAGAGGCCTGAGATGGGTGGACCGGAGGTAAGAACGATAGAGAGAG
GGAGATGTGAGGTGACAAATATGCATCGAATGCTTGCGACAGGATGAAAG
TGGGATGGAAAAATGGTAGTGGTAGCTGCTCCCAACCTGTTTCTCCCCAG
ACTTACCCACCCACTCAATCCTCCAATAGGGATGGCTCGGCAGCACCCCC
CTCCTCCCCTGTCATTACTTTGTCCACTCCCTCGCATCCCGCACCACCTA
CCGCCTCCGCCTTAGGAATAAGCCCTCCTCTTCCTCCTCCTCCCCTCCGT
CCCCCCCTCCATCCTCCCATCTCTCCGGGCAGGGCTATGCCCACATGGAA
AGCAATTACGGGAACCACTTCCCTTCCGGCTGGCTATGGTGCAATGCCAT
TTCGCCTCAGAGGGAAGTGAAGCTCCTTATGGTGGGAGGCAAATTTGAGA
TCGGGCCAACGGCTCCTACCACATGGATCGTTGCATTCAGGTCCCCACGT
TTTGAATGGACGTTTCGGACCACGGACTTGGACAAGGTAACGGCAAGGCT
TGACTATAGCACACGAACATTGAGGTAAGTGAGTGATGGAGGGAGTGGAT
GAACGAGGACGCCATGACCTCCAATGCTGCTTTTCATTCATCCACCCATC
GCCGAAGTTCCCTCCCCCTTCACTCCTCCTCTCCCTCCCTCCCTGTTATT
TCCACCTCTCGCGCAACAGATTGGAAGCCCGGTCAAGATGCGGCCGCCGA
AGGATAGAGGTGATGATGGTTGCGCCCCCAGGCTCCTTTGGCCCTCCACT
CTACGTCCCTACCCGAGGGGGCTTCTCGTGCTTGCCCGGCTGCCGGGAGT
CGTTCACGGCCACAGCGCATATCAAGGCGGTGGACGAGGGGGGGCGCGGA
GGGGGAAGGAGGATTGTTTTGGAAGAGGTGTGTGAGGTGCCTTTGGCGGC
ACTGGAGCTGGGAGGGGCGTTGCAGCGATTGTGAAGAGGGGGGAAGGAGG
GAGGAAGAAAGGGATGGATGCACATAGATTGACAAAAGACGCACGTGTAC
CACACGCCAGCGTAACACGGCAGGCACGATGACTGCAATTTCTATTTTTA
AACAGAACAAAAAGATTACCAAATGCGAATATTTTATTTGGGGGAAATGC
GACAAAAGAAGCTGGCGCCTGCTTTATCTGAGTCTCTATGAATATAAATA
AATAATTATTCTGAATCTTCCTCCTCCTTCTGAAGGCTTCGGACCACGCA
CCTGGGTTGTGATGATGGCAATGGTAAAAAGAAAGGAGAAAATCGGCTTT
GAAAAAAAAAACTCAATCGATAATTAATATCCATAAAATGCAGCGGCAGC
CGCAGTGC back to topCoding sequence (CDS) from alignment at scaffold_14:148580..150837- >mRNA_5950 ID=mRNA_5950|Name=jgi.p|Nanoce1779_2|593237|organism=Nannochloropsis oceanica|type=CDS|length=4437bp|location=Sequence derived from alignment at scaffold_14:148580..150837- (Nannochloropsis oceanica)
ATTGGAAGCCCGGTCAAGATGCGGCCGCCGAAGGATAGAGGTGATGATGG
TTGCGCCCCCAGGCTCCTTTGGCCCTCCACTCTACGTCCCTACCCGAGGG
GGCTTCTCGTGCTTGCCCGGCTGCCGGGAGTCGTTCACGGCCACAGCGCA
TATCAAGGCGGTGGACGAGGGGGGGCGCGGAGGGGGAAGGAGGATTGTTT
TGGAAGAGGTGTGTGAGGTGCCTTTGGCGGCACTGGAGCTGGGAGGGGCG
TTGCAGCGATTGTGAGGATGGCTCGGCAGCACCCCCCTCCTCCCCTGTCA
TTACTTTGTCCACTCCCTCGCATCCCGCACCACCTACCGCCTCCGCCTTA
GGAATAAGCCCTCCTCTTCCTCCTCCTCCCCTCCGTCCCCCCCTCCATCC
TCCCATCTCTCCGGGCAGGGCTATGCCCACATGGAAAGCAATTACGGGAA
CCACTTCCCTTCCGGCTGGCTATGGTGCAATGCCATTTCGCCTCAGAGGG
AAGTGAAGCTCCTTATGGTGGGAGGCAAATTTGAGATCGGGCCAACGGCT
CCTACCACATGGATCGTTGCATTCAGGTCCCCACGTTTTGAATGGACGTT
TCGGACCACGGACTTGGACAAGGTAACGGCAAGGCTTGACTATAGCACAC
GAACATTGAGATGCGCTGTTATCATCGAGTCCTCTCCCCCGTCATGCTCC
TGCTCCTTGCCCTTCAAGCCGCCTTCCTAGTTCTTACATCGGCCGATGCT
GCCGCTGCGAGAGGTGTAGGGTCAAGCTCATCCTCTTCAACACTACCGGC
GCCCTTTAACTCGCCAGATGTACATCCAAGCAAAAACGCCGTCAACCCTC
CCCCACCGCCCGCCTTCGCCTCCTCCTCCGCCCTTCCCCGACGACGCTGG
ACAGACAAGCGCGCCCCATCTTCAACCACATCTTATTCTGCATCTGCAAA
GACCGACTCAAGGCTACTGCAAGGCGTTCACGGGACCCGAAGTATTACAA
GCATCGGCACCGGCATCCTCCTCCCCCTCTTTCTCCTCCTCCAACCCTCC
CACTCCTCCCCCTTCGACCCCCATCCCCTGCCTCTTCTCCTTGGTCTCTG
CTTTTTTAACGGCTGGTATATTCGCGTCACAGACCATAAAAAACACCTAG
CGTTTGCCCTTATCGTCGGGTCATTCAAACATCCAGGGGCGAACTCCTAC
ACTGAACATTATGTTGCTCTCGTCTACTCAGATAAGCAGGGCAATATGCA
CACCGCTCACGCCTTCCCCGATCCCGACTCCGTGACAATCGACATGGACA
GCGAGGGGTACGTGGGTGTGCCTTCTAACTTCACTTGGCGCTCAGAAGAA
GTTGGCGAATTGCACATAGGGGGAAACGAAGGTCATTTTGATTTCACCCT
GCCGGGGATCGCGGCGGTGGCGACGTTTCATGACAGGGTGCCATGGTGTG
AAAAGAGGCCTGAGATGGGTGGACCGGAGATTGGAAGCCCGGTCAAGATG
CGGCCGCCGAAGGATAGAGGTGATGATGGTTGCGCCCCCAGGCTCCTTTG
GCCCTCCACTCTACGTCCCTACCCGAGGGGGCTTCTCGTGCTTGCCCGGC
TGCCGGGAGTCGTTCACGGCCACAGCGCATATCAAGGCGGTGGACGAGGG
GGGGCGCGGAGGGGGAAGGAGGATTGTTTTGGAAGAGGTGTGTGAGGTGC
CTTTGGCGGCACTGGAGCTGGGAGGGGCGTTGCAGCGATTGTGAGGATGG
CTCGGCAGCACCCCCCTCCTCCCCTGTCATTACTTTGTCCACTCCCTCGC
ATCCCGCACCACCTACCGCCTCCGCCTTAGGAATAAGCCCTCCTCTTCCT
CCTCCTCCCCTCCGTCCCCCCCTCCATCCTCCCATCTCTCCGGGCAGGGC
TATGCCCACATGGAAAGCAATTACGGGAACCACTTCCCTTCCGGCTGGCT
ATGGTGCAATGCCATTTCGCCTCAGAGGGAAGTGAAGCTCCTTATGGTGG
GAGGCAAATTTGAGATCGGGCCAACGGCTCCTACCACATGGATCGTTGCA
TTCAGGTCCCCACGTTTTGAATGGACGTTTCGGACCACGGACTTGGACAA
GGTAACGGCAAGGCTTGACTATAGCACACGAACATTGAGATGCGCTGTTA
TCATCGAGTCCTCTCCCCCGTCATGCTCCTGCTCCTTGCCCTTCAAGCCG
CCTTCCTAGTTCTTACATCGGCCGATGCTGCCGCTGCGAGAGGTGTAGGG
TCAAGCTCATCCTCTTCAACACTACCGGCGCCCTTTAACTCGCCAGATGT
ACATCCAAGCAAAAACGCCGTCAACCCTCCCCCACCGCCCGCCTTCGCCT
CCTCCTCCGCCCTTCCCCGACGACGCTGGACAGACAAGCGCGCCCCATCT
TCAACCACATCTTATTCTGCATCTGCAAAGACCGACTCAAGGCTACTGCA
AGGCGTTCACGGGACCCGAAGTATTACAAGCATCGGCACCGGCATCCTCC
TCCCCCTCTTTCTCCTCCTCCAACCCTCCCACTCCTCCCCCTTCGACCCC
CATCCCCTGCCTCTTCTCCTTGGTCTCTGCTTTTTTAACGGCTGGTATAT
TCGCGTCACAGACCATAAAAAACACCTAGCGTTTGCCCTTATCGTCGGGT
CATTCAAACATCCAGGGGCGAACTCCTACACTGAACATTATGTTGCTCTC
GTCTACTCAGATAAGCAGGGCAATATGCACACCGCTCACGCCTTCCCCGA
TCCCGACTCCGTGACAATCGACATGGACAGCGAGGGGTACGTGGGTGTGC
CTTCTAACTTCACTTGGCGCTCAGAAGAAGTTGGCGAATTGCACATAGGG
GGAAACGAAGGTCATTTTGATTTCACCCTGCCGGGGATCGCGGCGGTGGC
GACGTTTCATGACAGGGTGCCATGGTGTGAAAAGAGGCCTGAGATGGGTG
GACCGGAGATTGGAAGCCCGGTCAAGATGCGGCCGCCGAAGGATAGAGGT
GATGATGGTTGCGCCCCCAGGCTCCTTTGGCCCTCCACTCTACGTCCCTA
CCCGAGGGGGCTTCTCGTGCTTGCCCGGCTGCCGGGAGTCGTTCACGGCC
ACAGCGCATATCAAGGCGGTGGACGAGGGGGGGCGCGGAGGGGGAAGGAG
GATTGTTTTGGAAGAGGTGTGTGAGGTGCCTTTGGCGGCACTGGAGCTGG
GAGGGGCGTTGCAGCGATTGTGAGGATGGCTCGGCAGCACCCCCCTCCTC
CCCTGTCATTACTTTGTCCACTCCCTCGCATCCCGCACCACCTACCGCCT
CCGCCTTAGGAATAAGCCCTCCTCTTCCTCCTCCTCCCCTCCGTCCCCCC
CTCCATCCTCCCATCTCTCCGGGCAGGGCTATGCCCACATGGAAAGCAAT
TACGGGAACCACTTCCCTTCCGGCTGGCTATGGTGCAATGCCATTTCGCC
TCAGAGGGAAGTGAAGCTCCTTATGGTGGGAGGCAAATTTGAGATCGGGC
CAACGGCTCCTACCACATGGATCGTTGCATTCAGGTCCCCACGTTTTGAA
TGGACGTTTCGGACCACGGACTTGGACAAGGTAACGGCAAGGCTTGACTA
TAGCACACGAACATTGAGATGCGCTGTTATCATCGAGTCCTCTCCCCCGT
CATGCTCCTGCTCCTTGCCCTTCAAGCCGCCTTCCTAGTTCTTACATCGG
CCGATGCTGCCGCTGCGAGAGGTGTAGGGTCAAGCTCATCCTCTTCAACA
CTACCGGCGCCCTTTAACTCGCCAGATGTACATCCAAGCAAAAACGCCGT
CAACCCTCCCCCACCGCCCGCCTTCGCCTCCTCCTCCGCCCTTCCCCGAC
GACGCTGGACAGACAAGCGCGCCCCATCTTCAACCACATCTTATTCTGCA
TCTGCAAAGACCGACTCAAGGCTACTGCAAGGCGTTCACGGGACCCGAAG
TATTACAAGCATCGGCACCGGCATCCTCCTCCCCCTCTTTCTCCTCCTCC
AACCCTCCCACTCCTCCCCCTTCGACCCCCATCCCCTGCCTCTTCTCCTT
GGTCTCTGCTTTTTTAACGGCTGGTATATTCGCGTCACAGACCATAAAAA
ACACCTAGCGTTTGCCCTTATCGTCGGGTCATTCAAACATCCAGGGGCGA
ACTCCTACACTGAACATTATGTTGCTCTCGTCTACTCAGATAAGCAGGGC
AATATGCACACCGCTCACGCCTTCCCCGATCCCGACTCCGTGACAATCGA
CATGGACAGCGAGGGGTACGTGGGTGTGCCTTCTAACTTCACTTGGCGCT
CAGAAGAAGTTGGCGAATTGCACATAGGGGGAAACGAAGGTCATTTTGAT
TTCACCCTGCCGGGGATCGCGGCGGTGGCGACGTTTCATGACAGGGTGCC
ATGGTGTGAAAAGAGGCCTGAGATGGGTGGACCGGAG back to top
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