jgi.p|Nanoce1779_2|577879, mRNA_595 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577879
Unique NamemRNA_595
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length707
Alignment locationscaffold_3:1476405..1477212 -

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Properties
Property NameValue
TranscriptId577965
TrackFilteredModels2
ProteinId577879
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1476405..1477212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577879gene_595Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577879mRNA_595-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_595CDS_595Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_595 ID=mRNA_595|Name=jgi.p|Nanoce1779_2|577879|organism=Nannochloropsis oceanica|type=mRNA|length=707bp
GACAGGTCTATTCGCATCAAGGTAGGTTCTTGAGGTGCTCTCTTCCCAGA
TTTATCACACACACACACACATACACACTTTCCCTCTTCTTCATTTCTCC
TTTTCTCAACCGCCCGCCCACCCTCTCTATCTCCCTCCTTCCCCCCGTCC
CTCTTCACTCAGGTTGTGATCGACGCAGCCAATGTGGGCATGCATGACGC
CCCCGATACCTCCAGCGCGTGCCAGGGCCGAATCCCCCTCAATTCCCGCA
TCGACGCCAACCGAATCGCGGCCGCCATCGAGTATTTCCGCCAGCGCAAC
GTGGGTGTCGCGGCCTTTATTCCCGCCTATGTACTGCGTCGGAAGGGCCC
GGCGTCGGCCTCAGCGAAGGGGCCTGGGAGCGAGAATGTCATGATGCAGA
CGGAGACGCAGGAGGTTCTTCAGTCTCTGGTGGACAGTCGCAGACTCGCA
ACCGTGCCACCCAACGACAACGACGACCTATACATTCTAGAATTTGCCCG
AGAGAAGAACGCCCTAGTGGTGTCGAACGACTGTTTCCGCGATCACTGTG
CCCGCGATAAGTCCCTCCGCCTTTTCGTCGCGCAGAACCGCCTGTCCTAT
ACTTTCTTCAACCAGGACTTTTTGCCCAACCCCGGCCACGCGTGGATCAA
GCAGTTGAATGAGAGGGTGAGGGCGAAGGAGGGGCCTTGAGTGGGATGAG
CTGGAGG
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protein sequence of jgi.p|Nanoce1779_2|577879

>mRNA_595-protein ID=mRNA_595-protein|Name=jgi.p|Nanoce1779_2|577879|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MHDAPDTSSACQGRIPLNSRIDANRIAAAIEYFRQRNVGVAAFIPAYVLR
RKGPASASAKGPGSENVMMQTETQEVLQSLVDSRRLATVPPNDNDDLYIL
EFAREKNALVVSNDCFRDHCARDKSLRLFVAQNRLSYTFFNQDFLPNPGH
AWIKQLNERVRAKEGP*
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mRNA from alignment at scaffold_3:1476405..1477212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_595 ID=mRNA_595|Name=jgi.p|Nanoce1779_2|577879|organism=Nannochloropsis oceanica|type=mRNA|length=808bp|location=Sequence derived from alignment at scaffold_3:1476405..1477212- (Nannochloropsis oceanica)
GACAGGTCTATTCGCATCAAGGTAGGTTCTTGAGGTGCTCTCTTCCCAGA
TTTATCACACACACACACACATACACACTTTCCCTCTTCTTCATTTCTCC
TTTTCTCAACCGCCCGCCCACCCTCTCTATCTCCCTCCTTCCCCCCGTCC
CTCTTCACTCAGGTTGTGATCGACGCAGCCAATGTGGGCATGCATGACGC
CCCCGATACCTCCAGCGCGTGCCAGGGCCGAATCCCCCTCAATTCCCGCA
TCGACGCCAACCGAATCGCGGCCGCCATCGAGTATTTCCGCCAGCGCAAC
GTGGGTGTCGCGGCCTTTATTCCCGCCTATGTACTGCGTCGGAAGGGCCC
GGCGTCGGCCTCAGCGAAGGGGCCTGGGAGCGAGAATGTCATGATGCAGA
CGGAGACGCAGGAGGTTCTTCAGTCTCTGGTGGACAGTCGCAGACTCGCA
ACCGTGCCACCCAACGACAACGACGACCTATACATTCTAGAATTTGCCCG
AGAGAAGGTACGGATTGGATCGAGGCCACGCGAAGTGAATTATGGACTTG
CTTGCGTCTTCTACTAACACCTGCTTCCCCCTCCTTCCTCCCCCCCCCCC
CTCCCAAGAACGCCCTAGTGGTGTCGAACGACTGTTTCCGCGATCACTGT
GCCCGCGATAAGTCCCTCCGCCTTTTCGTCGCGCAGAACCGCCTGTCCTA
TACTTTCTTCAACCAGGACTTTTTGCCCAACCCCGGCCACGCGTGGATCA
AGCAGTTGAATGAGAGGGTGAGGGCGAAGGAGGGGCCTTGAGTGGGATGA
GCTGGAGG
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Coding sequence (CDS) from alignment at scaffold_3:1476405..1477212-

>mRNA_595 ID=mRNA_595|Name=jgi.p|Nanoce1779_2|577879|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_3:1476405..1477212- (Nannochloropsis oceanica)
AACGCCCTAGTGGTGTCGAACGACTGTTTCCGCGATCACTGTGCCCGCGA
TAAGTCCCTCCGCCTTTTCGTCGCGCAGAACCGCCTGTCCTATACTTTCT
TCAACCAGGACTTTTTGCCCAACCCCGGCCACGCGTGGATCAAGCAGTTG
AATGAGAGGGTGAGGGCGAAGGAGGGGCCTTGAATGCATGACGCCCCCGA
TACCTCCAGCGCGTGCCAGGGCCGAATCCCCCTCAATTCCCGCATCGACG
CCAACCGAATCGCGGCCGCCATCGAGTATTTCCGCCAGCGCAACGTGGGT
GTCGCGGCCTTTATTCCCGCCTATGTACTGCGTCGGAAGGGCCCGGCGTC
GGCCTCAGCGAAGGGGCCTGGGAGCGAGAATGTCATGATGCAGACGGAGA
CGCAGGAGGTTCTTCAGTCTCTGGTGGACAGTCGCAGACTCGCAACCGTG
CCACCCAACGACAACGACGACCTATACATTCTAGAATTTGCCCGAGAGAA
GAACGCCCTAGTGGTGTCGAACGACTGTTTCCGCGATCACTGTGCCCGCG
ATAAGTCCCTCCGCCTTTTCGTCGCGCAGAACCGCCTGTCCTATACTTTC
TTCAACCAGGACTTTTTGCCCAACCCCGGCCACGCGTGGATCAAGCAGTT
GAATGAGAGGGTGAGGGCGAAGGAGGGGCCTTGAATGCATGACGCCCCCG
ATACCTCCAGCGCGTGCCAGGGCCGAATCCCCCTCAATTCCCGCATCGAC
GCCAACCGAATCGCGGCCGCCATCGAGTATTTCCGCCAGCGCAACGTGGG
TGTCGCGGCCTTTATTCCCGCCTATGTACTGCGTCGGAAGGGCCCGGCGT
CGGCCTCAGCGAAGGGGCCTGGGAGCGAGAATGTCATGATGCAGACGGAG
ACGCAGGAGGTTCTTCAGTCTCTGGTGGACAGTCGCAGACTCGCAACCGT
GCCACCCAACGACAACGACGACCTATACATTCTAGAATTTGCCCGAGAGA
AG
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Synonyms
Publications