jgi.p|Nanoce1779_2|593233, mRNA_5949 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593233
Unique Name	mRNA_5949
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1967
Alignment location	scaffold_14:146516..148482 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593319
Track	FilteredModels2
ProteinId	593233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:146516..148482 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593233	gene_5949	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593233	mRNA_5949-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5949	CDS_5949	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:146516..148482+
coding sequence from alignment at scaffold_14:146516..148482+

mRNA sequence

>mRNA_5949 ID=mRNA_5949|Name=jgi.p|Nanoce1779_2|593233|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp
AACAACAGAACCACACAACCAGAATATTATAAGTACCATCAGACGACAGC
CCAATTCCCATCCTCGCCCTCTCCTTCAACCGGCGCGGTGGAAAGAAAGC
GAAGCCGCGAGGAAGGGGCAGAGGGCAAGGACAAAGAGGAGCCTCCAACA
CGGCTGATCGTCACAAAGAAATATAAGCCGCAATGAATAGCAACGGAGAC
TGGAACTTGGTCAATTATGATCAATATGTAGAGCTCGCTTGCCATGGTCA
CCGGTGGTAATGATGCCAGCAACGGGCGGGGCGGATCGATTGCCTCACTG
CCCTACATATATATTATCATATCAAACAGGCAGGGGCCATGCCATCCCTG
CTGTTGCTGCCCCTCCTCCTGCCATGTTTCCTCCTCTTTCTGCCAGGCAT
GGCCTTCTTGGCTCCCGTTCCCGCTACTCCAATTTGCCATCCCTACTCCT
TCTCGTCCCTTCTCGCCACAAAGGAGTCGGCCAGCATCACACTTCCTCCT
GCGACCCATCCCTCCACCCAACCCACCCTCATTCGTTTCAAACGGCATGC
GCTCCGTCGGGCGTTGCACCTGGCCGGGCGACGGCTCCTTCCGTTTCTGT
TTTCCGGGTGGGTGGACGAATGGTTGGAACGTCGATGGGTAGAAGGGGAA
AAGGCATGGGAACGGGAGCTCCTGGTCTTGGCGAACGACTGGCAGGAGAA
AGACAACGAAAGGATTCAGGGGAAAGGAATAGGGAAAGTGACAGAGTGGG
TGGTTGAAGGCCCCCAGCCTCTGCCTGCAACTGTAAAAAATGACAACGTC
CCTTCTTCCTTCCCCCCCGCATCTTGCTCCTCCCCCTTCGTCCTTTTCCG
TGCACCTCTAAATAAGCGCGAAAGAATGAAGAAGGCTTTAACGCGATTAA
GCGCCATTCTCCGATCCATTTTTCTGCCGCCCATCTTGTTTGGTGCGAGG
AATTCGAGGAATGGAGGGAGGGGTGCGATGGAAGACGAGGAGATCCAAGA
GTGGCGCTTGTATGCGGCCGCGCGTGCGGAGAGAGAGGTAAATAGGAAAA
TGAGAAGAAGAATTCAAAAGAAAGGAGAAGGAGATGGTGAGGGGGTAGTA
CTGGGTAAGATAGGAATCAAATTTCGAATCCCCGAAACGCGGACAATCAC
GGCGGTGGACCGAGCGGGGGCTGCGTTGTTTAAGTGGGAGGAGGCAGAGG
AGGAAGTGGCGGAGGAGGAGGTGGAGGAGTTAGTGATAGATGAAATGAAA
GGAAGTGAAGGGGGAGTGCTCAAAATGAGAACTGTCGGCGTGAAGGTAGG
TGGAGGGGAGTGTGCGGGCGGAGGCTTAAGGCCTTTGCCGGTGGTTGTGT
TGGTGTGGTGTTATGTCCCGCCCGAGGCTAGAGGGCGGGGATATGGGGAG
AAGATGATGGAGATGGTGAGCGAGGCATTGCTTGGAGAGAAAGAAGAGAA
AGAGGAACACGGACTCGGAAACTGGAGGACGAGGAAAAGGGGGAGGGAGA
GAAGAGGATATATTCTGTTGACTGTTGATGATAATGGGAGTGGGAGGTTG
ACGGGGTACTACCAAAGGTTGGGCTTTCGCATGGCACCGTCCTTGTCGAG
TGAGGCGTGTGAAGTGATGCTGCGGCCCATCATAACGTAGTTGATTTGAG
GGAGGAGAGAAGGGGGAAAGGAGGATGCGTTGCTCACGGGCGTCTGATTA
TTGTGGACCGGTCCGGGAGAAGGAGATTGATGAGAGGAACTGTGTTGATG
ATGACATACAGAACGCAGGCCGTGAGACTAACTTTTTGTAAAGGCCTGAT
GAATGAAACAGAAATCAATCGACGTGAAGGCCTGACGAATGAAACAGAAA
TCAATCGACGTGAAGGCCTGACGAATGAAACAGAAATCAATCGACGTGAA
GGCCTGACGAATGAAAAAGAAATCAATCGACGTGAAGGCCTGATGAATGA
AAAAGAAATCAATCGAC

protein sequence of jgi.p|Nanoce1779_2|593233

>mRNA_5949-protein ID=mRNA_5949-protein|Name=jgi.p|Nanoce1779_2|593233|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MPSLLLLPLLLPCFLLFLPGMAFLAPVPATPICHPYSFSSLLATKESASI
TLPPATHPSTQPTLIRFKRHALRRALHLAGRRLLPFLFSGWVDEWLERRW
VEGEKAWERELLVLANDWQEKDNERIQGKGIGKVTEWVVEGPQPLPATVK
NDNVPSSFPPASCSSPFVLFRAPLNKRERMKKALTRLSAILRSIFLPPIL
FGARNSRNGGRGAMEDEEIQEWRLYAAARAEREVNRKMRRRIQKKGEGDG
EGVVLGKIGIKFRIPETRTITAVDRAGAALFKWEEAEEEVAEEEVEELVI
DEMKGSEGGVLKMRTVGVKVGGGECAGGGLRPLPVVVLVWCYVPPEARGR
GYGEKMMEMVSEALLGEKEEKEEHGLGNWRTRKRGRERRGYILLTVDDNG
SGRLTGYYQRLGFRMAPSLSSEACEVMLRPIIT*

mRNA from alignment at scaffold_14:146516..148482+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5949 ID=mRNA_5949|Name=jgi.p|Nanoce1779_2|593233|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp|location=Sequence derived from alignment at scaffold_14:146516..148482+ (Nannochloropsis oceanica)
AACAACAGAACCACACAACCAGAATATTATAAGTACCATCAGACGACAGC
CCAATTCCCATCCTCGCCCTCTCCTTCAACCGGCGCGGTGGAAAGAAAGC
GAAGCCGCGAGGAAGGGGCAGAGGGCAAGGACAAAGAGGAGCCTCCAACA
CGGCTGATCGTCACAAAGAAATATAAGCCGCAATGAATAGCAACGGAGAC
TGGAACTTGGTCAATTATGATCAATATGTAGAGCTCGCTTGCCATGGTCA
CCGGTGGTAATGATGCCAGCAACGGGCGGGGCGGATCGATTGCCTCACTG
CCCTACATATATATTATCATATCAAACAGGCAGGGGCCATGCCATCCCTG
CTGTTGCTGCCCCTCCTCCTGCCATGTTTCCTCCTCTTTCTGCCAGGCAT
GGCCTTCTTGGCTCCCGTTCCCGCTACTCCAATTTGCCATCCCTACTCCT
TCTCGTCCCTTCTCGCCACAAAGGAGTCGGCCAGCATCACACTTCCTCCT
GCGACCCATCCCTCCACCCAACCCACCCTCATTCGTTTCAAACGGCATGC
GCTCCGTCGGGCGTTGCACCTGGCCGGGCGACGGCTCCTTCCGTTTCTGT
TTTCCGGGTGGGTGGACGAATGGTTGGAACGTCGATGGGTAGAAGGGGAA
AAGGCATGGGAACGGGAGCTCCTGGTCTTGGCGAACGACTGGCAGGAGAA
AGACAACGAAAGGATTCAGGGGAAAGGAATAGGGAAAGTGACAGAGTGGG
TGGTTGAAGGCCCCCAGCCTCTGCCTGCAACTGTAAAAAATGACAACGTC
CCTTCTTCCTTCCCCCCCGCATCTTGCTCCTCCCCCTTCGTCCTTTTCCG
TGCACCTCTAAATAAGCGCGAAAGAATGAAGAAGGCTTTAACGCGATTAA
GCGCCATTCTCCGATCCATTTTTCTGCCGCCCATCTTGTTTGGTGCGAGG
AATTCGAGGAATGGAGGGAGGGGTGCGATGGAAGACGAGGAGATCCAAGA
GTGGCGCTTGTATGCGGCCGCGCGTGCGGAGAGAGAGGTAAATAGGAAAA
TGAGAAGAAGAATTCAAAAGAAAGGAGAAGGAGATGGTGAGGGGGTAGTA
CTGGGTAAGATAGGAATCAAATTTCGAATCCCCGAAACGCGGACAATCAC
GGCGGTGGACCGAGCGGGGGCTGCGTTGTTTAAGTGGGAGGAGGCAGAGG
AGGAAGTGGCGGAGGAGGAGGTGGAGGAGTTAGTGATAGATGAAATGAAA
GGAAGTGAAGGGGGAGTGCTCAAAATGAGAACTGTCGGCGTGAAGGTAGG
TGGAGGGGAGTGTGCGGGCGGAGGCTTAAGGCCTTTGCCGGTGGTTGTGT
TGGTGTGGTGTTATGTCCCGCCCGAGGCTAGAGGGCGGGGATATGGGGAG
AAGATGATGGAGATGGTGAGCGAGGCATTGCTTGGAGAGAAAGAAGAGAA
AGAGGAACACGGACTCGGAAACTGGAGGACGAGGAAAAGGGGGAGGGAGA
GAAGAGGATATATTCTGTTGACTGTTGATGATAATGGGAGTGGGAGGTTG
ACGGGGTACTACCAAAGGTTGGGCTTTCGCATGGCACCGTCCTTGTCGAG
TGAGGCGTGTGAAGTGATGCTGCGGCCCATCATAACGTAGTTGATTTGAG
GGAGGAGAGAAGGGGGAAAGGAGGATGCGTTGCTCACGGGCGTCTGATTA
TTGTGGACCGGTCCGGGAGAAGGAGATTGATGAGAGGAACTGTGTTGATG
ATGACATACAGAACGCAGGCCGTGAGACTAACTTTTTGTAAAGGCCTGAT
GAATGAAACAGAAATCAATCGACGTGAAGGCCTGACGAATGAAACAGAAA
TCAATCGACGTGAAGGCCTGACGAATGAAACAGAAATCAATCGACGTGAA
GGCCTGACGAATGAAAAAGAAATCAATCGACGTGAAGGCCTGATGAATGA
AAAAGAAATCAATCGAC

Coding sequence (CDS) from alignment at scaffold_14:146516..148482+

>mRNA_5949 ID=mRNA_5949|Name=jgi.p|Nanoce1779_2|593233|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_14:146516..148482+ (Nannochloropsis oceanica)
ATGCCATCCCTGCTGTTGCTGCCCCTCCTCCTGCCATGTTTCCTCCTCTT
TCTGCCAGGCATGGCCTTCTTGGCTCCCGTTCCCGCTACTCCAATTTGCC
ATCCCTACTCCTTCTCGTCCCTTCTCGCCACAAAGGAGTCGGCCAGCATC
ACACTTCCTCCTGCGACCCATCCCTCCACCCAACCCACCCTCATTCGTTT
CAAACGGCATGCGCTCCGTCGGGCGTTGCACCTGGCCGGGCGACGGCTCC
TTCCGTTTCTGTTTTCCGGGTGGGTGGACGAATGGTTGGAACGTCGATGG
GTAGAAGGGGAAAAGGCATGGGAACGGGAGCTCCTGGTCTTGGCGAACGA
CTGGCAGGAGAAAGACAACGAAAGGATTCAGGGGAAAGGAATAGGGAAAG
TGACAGAGTGGGTGGTTGAAGGCCCCCAGCCTCTGCCTGCAACTGTAAAA
AATGACAACGTCCCTTCTTCCTTCCCCCCCGCATCTTGCTCCTCCCCCTT
CGTCCTTTTCCGTGCACCTCTAAATAAGCGCGAAAGAATGAAGAAGGCTT
TAACGCGATTAAGCGCCATTCTCCGATCCATTTTTCTGCCGCCCATCTTG
TTTGGTGCGAGGAATTCGAGGAATGGAGGGAGGGGTGCGATGGAAGACGA
GGAGATCCAAGAGTGGCGCTTGTATGCGGCCGCGCGTGCGGAGAGAGAGG
TAAATAGGAAAATGAGAAGAAGAATTCAAAAGAAAGGAGAAGGAGATGGT
GAGGGGGTAGTACTGGGTAAGATAGGAATCAAATTTCGAATCCCCGAAAC
GCGGACAATCACGGCGGTGGACCGAGCGGGGGCTGCGTTGTTTAAGTGGG
AGGAGGCAGAGGAGGAAGTGGCGGAGGAGGAGGTGGAGGAGTTAGTGATA
GATGAAATGAAAGGAAGTGAAGGGGGAGTGCTCAAAATGAGAACTGTCGG
CGTGAAGGTAGGTGGAGGGGAGTGTGCGGGCGGAGGCTTAAGGCCTTTGC
CGGTGGTTGTGTTGGTGTGGTGTTATGTCCCGCCCGAGGCTAGAGGGCGG
GGATATGGGGAGAAGATGATGGAGATGGTGAGCGAGGCATTGCTTGGAGA
GAAAGAAGAGAAAGAGGAACACGGACTCGGAAACTGGAGGACGAGGAAAA
GGGGGAGGGAGAGAAGAGGATATATTCTGTTGACTGTTGATGATAATGGG
AGTGGGAGGTTGACGGGGTACTACCAAAGGTTGGGCTTTCGCATGGCACC
GTCCTTGTCGAGTGAGGCGTGTGAAGTGATGCTGCGGCCCATCATAACGT
AG

Synonyms

Publications