jgi.p|Nanoce1779_2|556734, mRNA_5945 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556734
Unique Name	mRNA_5945
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1506
Alignment location	scaffold_14:136453..138767 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	556820
Track	FilteredModels2
ProteinId	556734

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:136453..138767 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556734	gene_5945	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556734	mRNA_5945-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5945	CDS_5945	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:136453..138767+
coding sequence from alignment at scaffold_14:136453..138767+

mRNA sequence

>mRNA_5945 ID=mRNA_5945|Name=jgi.p|Nanoce1779_2|556734|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
ACAGACAGATAGGAACAGGAGATACACAATACGGACAAGACATTGAAGAC
AAGGGATATTATTTGGTTGCGCACAGGGAAATAATCCAGTCTGGTCTTAG
GATTGAACAACACAGTTCTACCAAGGTCTAGCTCTGACAGTCGATTCTGG
TGCACCGATGTAATAAGCGTCTTGTACGGTCTTACGCAAGACTAAGAATG
TCAGGCTTAGATGGTCATACTACAGGATGTAATTGGTACTTTGGTGTGGG
ACCGGTACTCCCGGTAAGCCATAGTCATACAGCACGCTAGTATGGAGTTT
CAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAATCTTCGTGACTT
CCTGCCTTTTCACTGCGACTGCTGCAAGCGAACCTTTTGCCTCGAACACC
GCACCTACGCCGCCCACAGCTGTCCACATCAAGGGCAAAAACAACAAATA
GCGATCAAGTGCCCCGTCTGTGCGCTCACTCTCACCCTGACAGCTGCACA
AGACCCCAACCTCGTCTGGCAGCTCCATTCGAGCTCTGCTGAATGCAAAC
CTGCGCAGAAAACGAAGCGAGAACGATGCGGAGTGAAGGGCTGCAAGGAA
GTGATGGGCCCGAGTAATACCCATGTATGTGGCGCCTGTAGAAAGGAAGT
CTGTCTTAGGCATCGGTACAAAGACCACCATGCTTGCACGGGAGCAGTCA
AGCAGGGAAGGGGGGGAATGAGGGGCGTTGCTTCTTGGTTTGGTGGTGGT
GGCGGAGGAATGGGGGGTGGCAGCAGTAACATCGGCAAGGGAAAGCCGAC
CACGCCTGTACGAGCAGCTGCAGCAGCGGGGGGGAGGGGGCGGGGGGGAG
GCAGTGTGGCGAACGGTAAGGGCAGCAGTAGCAGCAGCAGCAGCAGCAGC
AGCAGTAATGGCCATCATGCGCGGCGAGGGAGTAGGGGCAGCAACAGGCC
GACACCTGATCCAAGCAATTCATTGCAAGGAACGACGGAACGACGCCGAC
GGGGAAGGGTAGTAGGAGCAGGGGGGGCTTATCCAGGGCAAGCGGGACAT
AAAAACAAAAACAACAGCAATGACGTGGATTTGACCAACGACGACGGCAG
TAGTAGCAGCAGTACCCCCCCCTCCATCCGGCCCTCCCAGGCGGGGCAGA
CGGCGGATGGTGGGTGTCCATTCTGTCGGGCCTCGTTTGTGGACCCCGTA
CTGCTGGTTGAACACGTGGAGAGAGAGCATGGAGAGGACGGGCGGAGGGA
AGTGGGAGGAGGGGAGGGAGGAGGGATAGGGTGCCAGGTGGCTTGACAAG
GTGAGAAGAGGATAAGTGGATGACTAGAAGGAGGGCTTGTACACACAGTC
ACACACACAATTTTGCACGAGATTCACATTTTGATGCTGTTGATAGCAAA
GTAGTGTGGAATGAAATCAAAGAAATAAAAAAATACAGAGAAGCAATCAA
GAAGGGAATTCCATATTTCGATGTGTCGAGACAGGCGCTCGATGGCATTC
CAAACG

protein sequence of jgi.p|Nanoce1779_2|556734

>mRNA_5945-protein ID=mRNA_5945-protein|Name=jgi.p|Nanoce1779_2|556734|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MEFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQK
QQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPAQKTKRERCGVKG
CKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGRGGMRGVASWF
GGGGGGMGGGSSNIGKGKPTTPVRAAAAAGGRGRGGGSVANGKGSSSSSS
SSSSSNGHHARRGSRGSNRPTPDPSNSLQGTTERRRRGRVVGAGGAYPGQ
AGHKNKNNSNDVDLTNDDGSSSSSTPPSIRPSQAGQTADGGCPFCRASFV
DPVLLVEHVEREHGEDGRREVGGGEGGGIGCQVA*

mRNA from alignment at scaffold_14:136453..138767+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5945 ID=mRNA_5945|Name=jgi.p|Nanoce1779_2|556734|organism=Nannochloropsis oceanica|type=mRNA|length=2315bp|location=Sequence derived from alignment at scaffold_14:136453..138767+ (Nannochloropsis oceanica)
ACAGACAGATAGGAACAGGAGATACACAATACGGACAAGACATTGAAGAC
AAGGGATATTATTTGGTTGCGCACAGGGAAATAATCCAGTCTGGTCTTAG
GATTGAACAACACAGTTCTACCAAGGTCTAGCTCTGACAGTCGATTCTGG
TGCACCGATGTAATAAGCGTCTTGTACGGTCTTACGCAAGACTAAGAATG
TCAGGCTTAGATGGTCATACTACAGGATGTAATTGGTACTTTGGTGTGGG
ACCGGTACTCCCGGTAAGCCATAGTCATACAGGTACAAGCTACATGCTGC
GACATAGGACGAACACAAGATGATAGTTTTGTATGATTTAATATGACCCC
TGTCTAAGAAGAGAAACTCTCTCCTTACACACTATTATTGAGAACAAATT
TGCTTACTTTATGGGTCTCCCTCATGTTCCCTGCCTGCTGCTGCTCTCCA
TATCGTAACGAGAAACACTCAAGCGAGCAAATTTCTGAGTGCTCCGTTGC
CTTACACATTAAACCCAACCCCACCTCACCCCCTTTCCCCACAGCACGCT
AGTATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAA
TCTTCGTGACTTCCTGCCTTTTCACTGCGGTATGTGCTTCCCCTTCTTCC
CCCCATCCCCTCCCTGTCCTGCCCCCGCTGTGTGTGCCCTGCACGGTCGC
TATGTCATGATGCAAGCCCAGGCGACGTTTCGTTGCGTCGAGCGAGAACG
TAAGGTTGAGCCTAGAGTGCTCTGCGTCTTTCGAGGCCTGTGATGGACCG
CGGGCCGATGCGTTGCCTCCTCCCACCCTCCCTCCCTCCATTTACGCGCC
GGACGGCGATGGCTCTTGCTTACGCCATGCTCCCTAGCCATGACAGTGGG
CCGGCGACAAACGCACCGACAGGAGCGCAGCAATGGATGGTCTGTGTTTA
TCTCCCGATGTATTTTCTGGGCTTGCCCGGTCAAGCTGTCACTTTTAGCG
TAAGCAATGCCGTCATCCATCTCTTCTTAAGCTCCACGCTTGCATTTTCC
CCTTGTCTTGTCCCCTTGCATCTCTCTCCATCATCGCTTCTCACAAGCAT
GCTATCAATCTATGCCATTTATTTACCCACCCTCCTTTCTTGCCGTCCCT
TAACCACCTTACCTCAAACCAAACAGACTGCTGCAAGCGAACCTTTTGCC
TCGAACACCGCACCTACGCCGCCCACAGCTGTCCACATCAAGGGCAAAAA
CAACAAATAGCGATCAAGTGCCCCGTCTGTGCGCTCACTCTCACCCTGAC
AGCTGCACAAGACCCCAACCTCGTCTGGCAGCTCCATTCGAGCTCTGCTG
AATGCAAACCTGCGCAGAAAACGAAGCGAGAACGATGCGGAGTGAAGGGC
TGCAAGGAAGTGATGGGCCCGAGTAATACCCATGTATGTGGCGCCTGTAG
AAAGGAAGTCTGTCTTAGGCATCGGTACAAAGACCACCATGCTTGCACGG
GAGCAGTCAAGCAGGGAAGGGGGGGAATGAGGGGCGTTGCTTCTTGGTTT
GGTGGTGGTGGCGGAGGAATGGGGGGTGGCAGCAGTAACATCGGCAAGGG
AAAGCCGACCACGCCTGTACGAGCAGCTGCAGCAGCGGGGGGGAGGGGGC
GGGGGGGAGGCAGTGTGGCGAACGGTAAGGGCAGCAGTAGCAGCAGCAGC
AGCAGCAGCAGCAGTAATGGCCATCATGCGCGGCGAGGGAGTAGGGGCAG
CAACAGGCCGACACCTGATCCAAGCAATTCATTGCAAGGAACGACGGAAC
GACGCCGACGGGGAAGGGTAGTAGGAGCAGGGGGGGCTTATCCAGGGCAA
GCGGGACATAAAAACAAAAACAACAGCAATGACGTGGATTTGACCAACGA
CGACGGCAGTAGTAGCAGCAGTACCCCCCCCTCCATCCGGCCCTCCCAGG
CGGGGCAGACGGCGGATGGTGGGTGTCCATTCTGTCGGGCCTCGTTTGTG
GACCCCGTACTGCTGGTTGAACACGTGGAGAGAGAGCATGGAGAGGACGG
GCGGAGGGAAGTGGGAGGAGGGGAGGGAGGAGGGATAGGGTGCCAGGTGG
CTTGACAAGGTGAGAAGAGGATAAGTGGATGACTAGAAGGAGGGCTTGTA
CACACAGTCACACACACAATTTTGCACGAGATTCACATTTTGATGCTGTT
GATAGCAAAGTAGTGTGGAATGAAATCAAAGAAATAAAAAAATACAGAGA
AGCAATCAAGAAGGGAATTCCATATTTCGATGTGTCGAGACAGGCGCTCG
ATGGCATTCCAAACG

Coding sequence (CDS) from alignment at scaffold_14:136453..138767+

>mRNA_5945 ID=mRNA_5945|Name=jgi.p|Nanoce1779_2|556734|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_14:136453..138767+ (Nannochloropsis oceanica)
ATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAATCT
TCGTGACTTCCTGCCTTTTCACTGCGACTGCTGCAAGCGAACCTTTTGCC
TCGAACACCGCACCTACGCCGCCCACAGCTGTCCACATCAAGGGCAAAAA
CAACAAATAGCGATCAAGTGCCCCGTCTGTGCGCTCACTCTCACCCTGAC
AGCTGCACAAGACCCCAACCTCGTCTGGCAGCTCCATTCGAGCTCTGCTG
AATGCAAACCTGCGCAGAAAACGAAGCGAGAACGATGCGGAGTGAAGGGC
TGCAAGGAAGTGATGGGCCCGAGTAATACCCATGTATGTGGCGCCTGTAG
AAAGGAAGTCTGTCTTAGGCATCGGTACAAAGACCACCATGCTTGCACGG
GAGCAGTCAAGCAGGGAAGGGGGGGAATGAGGGGCGTTGCTTCTTGGTTT
GGTGGTGGTGGCGGAGGAATGGGGGGTGGCAGCAGTAACATCGGCAAGGG
AAAGCCGACCACGCCTGTACGAGCAGCTGCAGCAGCGGGGGGGAGGGGGC
GGGGGGGAGGCAGTGTGGCGAACGGTAAGGGCAGCAGTAGCAGCAGCAGC
AGCAGCAGCAGCAGTAATGGCCATCATGCGCGGCGAGGGAGTAGGGGCAG
CAACAGGCCGACACCTGATCCAAGCAATTCATTGCAAGGAACGACGGAAC
GACGCCGACGGGGAAGGGTAGTAGGAGCAGGGGGGGCTTATCCAGGGCAA
GCGGGACATAAAAACAAAAACAACAGCAATGACGTGGATTTGACCAACGA
CGACGGCAGTAGTAGCAGCAGTACCCCCCCCTCCATCCGGCCCTCCCAGG
CGGGGCAGACGGCGGATGGTGGGTGTCCATTCTGTCGGGCCTCGTTTGTG
GACCCCGTACTGCTGGTTGAACACGTGGAGAGAGAGCATGGAGAGGACGG
GCGGAGGGAAGTGGGAGGAGGGGAGGGAGGAGGGATAGGGTGCCAGGTGG
CTTGAATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGC
AATCTTCGTGACTTCCTGCCTTTTCACTGCGACTGCTGCAAGCGAACCTT
TTGCCTCGAACACCGCACCTACGCCGCCCACAGCTGTCCACATCAAGGGC
AAAAACAACAAATAGCGATCAAGTGCCCCGTCTGTGCGCTCACTCTCACC
CTGACAGCTGCACAAGACCCCAACCTCGTCTGGCAGCTCCATTCGAGCTC
TGCTGAATGCAAACCTGCGCAGAAAACGAAGCGAGAACGATGCGGAGTGA
AGGGCTGCAAGGAAGTGATGGGCCCGAGTAATACCCATGTATGTGGCGCC
TGTAGAAAGGAAGTCTGTCTTAGGCATCGGTACAAAGACCACCATGCTTG
CACGGGAGCAGTCAAGCAGGGAAGGGGGGGAATGAGGGGCGTTGCTTCTT
GGTTTGGTGGTGGTGGCGGAGGAATGGGGGGTGGCAGCAGTAACATCGGC
AAGGGAAAGCCGACCACGCCTGTACGAGCAGCTGCAGCAGCGGGGGGGAG
GGGGCGGGGGGGAGGCAGTGTGGCGAACGGTAAGGGCAGCAGTAGCAGCA
GCAGCAGCAGCAGCAGCAGTAATGGCCATCATGCGCGGCGAGGGAGTAGG
GGCAGCAACAGGCCGACACCTGATCCAAGCAATTCATTGCAAGGAACGAC
GGAACGACGCCGACGGGGAAGGGTAGTAGGAGCAGGGGGGGCTTATCCAG
GGCAAGCGGGACATAAAAACAAAAACAACAGCAATGACGTGGATTTGACC
AACGACGACGGCAGTAGTAGCAGCAGTACCCCCCCCTCCATCCGGCCCTC
CCAGGCGGGGCAGACGGCGGATGGTGGGTGTCCATTCTGTCGGGCCTCGT
TTGTGGACCCCGTACTGCTGGTTGAACACGTGGAGAGAGAGCATGGAGAG
GACGGGCGGAGGGAAGTGGGAGGAGGGGAGGGAGGAGGGATAGGGTGCCA
GGTGGCTTGA

Synonyms

Publications