jgi.p|Nanoce1779_2|566774, mRNA_5943 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566774
Unique NamemRNA_5943
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length792
Alignment locationscaffold_14:132393..133622 +

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Properties
Property NameValue
TranscriptId566860
TrackFilteredModels2
ProteinId566774
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:132393..133622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566774gene_5943Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566774mRNA_5943-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5943CDS_5943Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5943 ID=mRNA_5943|Name=jgi.p|Nanoce1779_2|566774|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCT
CCAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGC
ACGATACTCTTCGTTTGGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCC
TTTCTCGAGCAAGCACAGTCATGGCTCAAGGCTTACCGACAGTCGTATGC
CCGAAGGATGGGACGGCGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGC
AGCAGCAGCAAAATGATGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAG
GTGCTGGCGCCTTTTAAGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGG
AGGGGACAAGATGACATCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAA
TTGGGGCAGGAGGAGAAGAGCGACGGCCCTTGCAGCTTCTGGCGGACAAT
ACACTTCCCACCAAGGCGGAAGCCACAGTGACAGTAGGTGATAAAAATAA
CGAAAATAGCAGAGTACCAGCCACGACCGTGAAGACAACGACGACGACGA
CAACGAGCGGCGAAAGTGGAAACATCAACAGCAGATTTGACAGGCGGCGC
TTGGCTGTGGCCTCGGCGATCTACGAAGTGACATACATGAGTGGAAGTAC
CTTGAGCTTCGTATGGGATACGGTCATGCACGAATTGAATCACGTCAAAA
AGACGGCATTGGCAAGGAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCG
ATCGTTGCGGTGAGGCAGGAGCAGTTGCAGGAACAGAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|566774

>mRNA_5943-protein ID=mRNA_5943-protein|Name=jgi.p|Nanoce1779_2|566774|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MLTVVGPFHFNAESVGLQVDAAVMKRCLESCMAHDTLRLDSDLRVEGSAA
FLEQAQSWLKAYRQSYARRMGRRYHAQQQQRQQQQQQNDDPGEYQALKSE
VLAPFKQAFLATARASGGDKMTSANKRGDEEEGIGAGGEERRPLQLLADN
TLPTKAEATVTVGDKNNENSRVPATTVKTTTTTTTSGESGNINSRFDRRR
LAVASAIYEVTYMSGSTLSFVWDTVMHELNHVKKTALARREVAEKEIGEA
IVAVRQEQLQEQR*
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mRNA from alignment at scaffold_14:132393..133622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5943 ID=mRNA_5943|Name=jgi.p|Nanoce1779_2|566774|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp|location=Sequence derived from alignment at scaffold_14:132393..133622+ (Nannochloropsis oceanica)
ATGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCT
CCAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGC
ACGGTAAGGCCCACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGG
CATGCAGATCTCCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGA
AATTGCGGCGAGGGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGTCCT
TGCCTACCGTACTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGT
GGATGGAGCTCATCCTCAGCCTTCTCCTCCTCCTCATTATCCTCCTATCA
TCGCGTCTTGAGCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCCATG
CCCGTGTTGCGCCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGC
ACCACCACCAGCAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTAC
ATACTCCAGCGGTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTCTTC
GTTTGGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAA
GCACAGTCATGGCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGATGGG
ACGGCGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAA
ATGATGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCT
TTTAAGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGAT
GACATCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAG
GAGAAGAGCGACGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCCACC
AAGGCGGAAGCCACAGTGACAGTAGGTGATAAAAATAACGAAAATAGCAG
AGTACCAGCCACGACCGTGAAGACAACGACGACGACGACAACGAGCGGCG
AAAGTGGAAACATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCC
TCGGCGATCTACGAAGTGACATACATGAGTGGAAGTACCTTGAGCTTCGT
ATGGGATACGGTCATGCACGAATTGAATCACGTCAAAAAGACGGCATTGG
CAAGGAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTG
AGGCAGGAGCAGTTGCAGGAACAGAGGTAG
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Coding sequence (CDS) from alignment at scaffold_14:132393..133622+

>mRNA_5943 ID=mRNA_5943|Name=jgi.p|Nanoce1779_2|566774|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_14:132393..133622+ (Nannochloropsis oceanica)
ATGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCT
CCAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGC
ACGATACTCTTCGTTTGGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCC
TTTCTCGAGCAAGCACAGTCATGGCTCAAGGCTTACCGACAGTCGTATGC
CCGAAGGATGGGACGGCGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGC
AGCAGCAGCAAAATGATGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAG
GTGCTGGCGCCTTTTAAGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGG
AGGGGACAAGATGACATCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAA
TTGGGGCAGGAGGAGAAGAGCGACGGCCCTTGCAGCTTCTGGCGGACAAT
ACACTTCCCACCAAGGCGGAAGCCACAGTGACAGTAGGTGATAAAAATAA
CGAAAATAGCAGAGTACCAGCCACGACCGTGAAGACAACGACGACGACGA
CAACGAGCGGCGAAAGTGGAAACATCAACAGCAGATTTGACAGGCGGCGC
TTGGCTGTGGCCTCGGCGATCTACGAAGTGACATACATGAGTGGAAGTAC
CTTGAGCTTCGTATGGGATACGGTCATGCACGAATTGAATCACGTCAAAA
AGACGGCATTGGCAAGGAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCG
ATCGTTGCGGTGAGGCAGGAGCAGTTGCAGGAACAGAGGTAGATGCTGAC
GGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTCCAGGTGG
ATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCACGATACT
CTTCGTTTGGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGA
GCAAGCACAGTCATGGCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGA
TGGGACGGCGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAG
CAAAATGATGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGC
GCCTTTTAAGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACA
AGATGACATCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCA
GGAGGAGAAGAGCGACGGCCCTTGCAGCTTCTGGCGGACAATACACTTCC
CACCAAGGCGGAAGCCACAGTGACAGTAGGTGATAAAAATAACGAAAATA
GCAGAGTACCAGCCACGACCGTGAAGACAACGACGACGACGACAACGAGC
GGCGAAAGTGGAAACATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGT
GGCCTCGGCGATCTACGAAGTGACATACATGAGTGGAAGTACCTTGAGCT
TCGTATGGGATACGGTCATGCACGAATTGAATCACGTCAAAAAGACGGCA
TTGGCAAGGAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGC
GGTGAGGCAGGAGCAGTTGCAGGAACAGAGGTAG
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Synonyms
Publications