jgi.p|Nanoce1779_2|593210, mRNA_5942 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593210
Unique Name	mRNA_5942
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2884
Alignment location	scaffold_14:130890..133773 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593296
Track	FilteredModels2
ProteinId	593210

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:130890..133773 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593210	gene_5942	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593210	mRNA_5942-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5942	CDS_5942	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:130890..133773+
coding sequence from alignment at scaffold_14:130890..133773+

mRNA sequence

>mRNA_5942 ID=mRNA_5942|Name=jgi.p|Nanoce1779_2|593210|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp
TTTGCTTACTTTATGGGTCTCCCTCATGTTCCCTGCCTGCTGCCGCTCTC
CGTATCGTAACGAGAAACACTCAAGCGAGCAAATTTCTGGAGTGCTCCGT
TGCCTTACATTAAACCCAACCCCACCTCACCCCCTTTCCCCACAGCACGC
TAGTATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCA
ATCTTCGTGACTTCCTGCCTTTTCACTGCGGTATGTGCTTCCCCTTCTTC
CCCCCATCCCCTCCCTGTCCTGCCCCCGCTGTGTGTGCCCTGCACGGTCG
CTATGTCATGATGCAAGCCCAGGCGACGTTTCGTTGCGTCGAGCGAGAAC
GTAATGTTGAGCCTAGAGTGCTCTGCGTCTTTCGAGGCCTGTGATGGACC
GCGGGCCGACGCGTTGCCTCCTCCCACCCTCCCTCCCTCCATTTACGCGC
CGGACGGCGATGGCTCTTGCTTACGCCATGCTCCCTAGCCATGACAGTGG
GCCGGCGACAAACGCACCGACAGGAGCGCAGCAATGGATGGTCTGTGTTT
ATCTCCCGATGTATTTTCTGGGCTTGCCCGGTCAAGCTGTCACTTTTAGC
GTAAGCAATGCCGTCATCCATTTCTTCTTACGCTTCGATTTATGCGCGTA
CAATCTGGTAACCGCCGACATTGGTGGAGTGAGCGGGGGAGACATGCCTT
GCAAGTGCTTGCACAGGAGGGGATTCATTTTGCTTGTCAACGCTATAAAT
ACATCAACCACAAATCGGATAGGAATGGGGTGTGTTATTTTGTGGCAGAA
GACTCTACGGGTAAGGAAGAAACAGGATTTCGGGTCATGTCTGCCCAGTG
CATGATTGCGGGACTGGGAAATTTCTTCAATTTTCCCTGTGTCCCGCGGC
TGGTGGCGCGGGTGGCGTTGGGGTTTAGTCGATCACAATCCTTGAGCTTG
GAACCGAGGCAAATCGAGTTGATTAACGACATATTTGCAAGCGAGGATAG
TGCTGTCATGACAGACGGCTCGGGATTTATATCGCCCGATCTTGTCTCAC
ACTTGCCCCCGCATTTATACCAGGGGCGAGCCCTGCCTGCTGCCCCGCTC
ATCGGGCCTTCCCTTGCTGTGCCTCCGTTTGCTGTTATCCAAGTGCGGGT
CATATGCCACATGGGTGGGTTTAAAGGCACCCTCCTTGTTCACCCACGCC
TTCAAAACAAGATCCAGCTCCGACGTTCTTCCATGCTGAAATTTCCTCCT
CCCAATCTGTCGGTTACTCCTTTGACTCGTCGGCCTAGCCTGGACGTGCT
GACAACCTTTCGTGTATTGAAAGCAAGCACCCGTCTCTCCCGCGAATTGG
TGCTGATCCTGCAGGCGCTGGAAGTACCTGACACCGTATTTATCAAACTA
TTGTGGTAGCAGTAGTAGCAGCATCAGAAGTGGCTCCAGCGCTATCCCAG
CAGCACCGTCAGCAGCACCATCATCACCACAACCACCGTGTCCAGGCTCC
GAGATGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGG
CCTCCAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGG
CGCACGGTAAGGCCCACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTG
AGGCATGCAGATCTCCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGG
AGAAATTGCGGCGAGGGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGT
CCTTGCCTACCGTACTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGA
AGTGGATGGAGCTCATCCTCAGCCTTCTCCTCCTCCTCATTATCCTCCTA
TCATCGCGTCTTGAGCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCC
ATGCCCGTGTTGCGCCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGC
AGCACCACCACCAGCAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGT
TACATACTCCAGCGGTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTC
TTCGTTTGGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAG
CAAGCACAGTCATGGCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGAT
GGGACGGCGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGC
AAAATGATGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCG
CCTTTTAAGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAA
GATGACATCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAG
GAGGAGAAGAGCGACGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCC
ACCAAGGCGGAAGCCACAGTGACAGTAGGTGATAAAAATAACGAAAATAG
CAGAGTACCAGCCACGACCGTGAAGACAACGACGACGACGACAACGAGCG
GCGAAAGTGGAAACATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTG
GCCTCGGCGATCTACGAAGTGACATACATGAGTGGAAGTACCTTGAGCTT
CGTATGGGATACGGTCATGCACGAATTGAATCACGTCAAAAAGACGGCAT
TGGCAAGGAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCG
GTGAGGCAGGAGCAGTTGCAGGAACAGAGGTAGGGTCGACAGACACAGGG
CATCCCACATCTCTGCGAGTGAGTCATCGAAGTAAAGGCGCGTATATGTA
CAGATTGTACATAAAGAGAAAGAGGTGATGTTGTAAATATTAACGTTGGA
ACGAGTCCAGAACAGCAACAAAGTTACCCACACG

protein sequence of jgi.p|Nanoce1779_2|593210

>mRNA_5942-protein ID=mRNA_5942-protein|Name=jgi.p|Nanoce1779_2|593210|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MRVQSGNRRHWWSERGRHALQVLAQEGIHFACQRYKYINHKSDRNGVCYF
VAEDSTGKEETGFRVMSAQCMIAGLGNFFNFPCVPRLVARVALGFSRSQS
LSLEPRQIELINDIFASEDSAVMTDGSGFISPDLVSHLPPHLYQGRALPA
APLIGPSLAVPPFAVIQVRVICHMGGFKGTLLVHPRLQNKIQLRRSSMLK
FPPPNLSVTPLTRRPSLDVLTTFRVLKASTRLSRELVLILQALEVPDTVF
IKLLW*

mRNA from alignment at scaffold_14:130890..133773+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5942 ID=mRNA_5942|Name=jgi.p|Nanoce1779_2|593210|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at scaffold_14:130890..133773+ (Nannochloropsis oceanica)
TTTGCTTACTTTATGGGTCTCCCTCATGTTCCCTGCCTGCTGCCGCTCTC
CGTATCGTAACGAGAAACACTCAAGCGAGCAAATTTCTGGAGTGCTCCGT
TGCCTTACATTAAACCCAACCCCACCTCACCCCCTTTCCCCACAGCACGC
TAGTATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCA
ATCTTCGTGACTTCCTGCCTTTTCACTGCGGTATGTGCTTCCCCTTCTTC
CCCCCATCCCCTCCCTGTCCTGCCCCCGCTGTGTGTGCCCTGCACGGTCG
CTATGTCATGATGCAAGCCCAGGCGACGTTTCGTTGCGTCGAGCGAGAAC
GTAATGTTGAGCCTAGAGTGCTCTGCGTCTTTCGAGGCCTGTGATGGACC
GCGGGCCGACGCGTTGCCTCCTCCCACCCTCCCTCCCTCCATTTACGCGC
CGGACGGCGATGGCTCTTGCTTACGCCATGCTCCCTAGCCATGACAGTGG
GCCGGCGACAAACGCACCGACAGGAGCGCAGCAATGGATGGTCTGTGTTT
ATCTCCCGATGTATTTTCTGGGCTTGCCCGGTCAAGCTGTCACTTTTAGC
GTAAGCAATGCCGTCATCCATTTCTTCTTACGCTTCGATTTATGCGCGTA
CAATCTGGTAACCGCCGACATTGGTGGAGTGAGCGGGGGAGACATGCCTT
GCAAGTGCTTGCACAGGAGGGGATTCATTTTGCTTGTCAACGCTATAAAT
ACATCAACCACAAATCGGATAGGAATGGGGTGTGTTATTTTGTGGCAGAA
GACTCTACGGGTAAGGAAGAAACAGGATTTCGGGTCATGTCTGCCCAGTG
CATGATTGCGGGACTGGGAAATTTCTTCAATTTTCCCTGTGTCCCGCGGC
TGGTGGCGCGGGTGGCGTTGGGGTTTAGTCGATCACAATCCTTGAGCTTG
GAACCGAGGCAAATCGAGTTGATTAACGACATATTTGCAAGCGAGGATAG
TGCTGTCATGACAGACGGCTCGGGATTTATATCGCCCGATCTTGTCTCAC
ACTTGCCCCCGCATTTATACCAGGGGCGAGCCCTGCCTGCTGCCCCGCTC
ATCGGGCCTTCCCTTGCTGTGCCTCCGTTTGCTGTTATCCAAGTGCGGGT
CATATGCCACATGGGTGGGTTTAAAGGCACCCTCCTTGTTCACCCACGCC
TTCAAAACAAGATCCAGCTCCGACGTTCTTCCATGCTGAAATTTCCTCCT
CCCAATCTGTCGGTTACTCCTTTGACTCGTCGGCCTAGCCTGGACGTGCT
GACAACCTTTCGTGTATTGAAAGCAAGCACCCGTCTCTCCCGCGAATTGG
TGCTGATCCTGCAGGCGCTGGAAGTACCTGACACCGTATTTATCAAACTA
TTGTGGTAGCAGTAGTAGCAGCATCAGAAGTGGCTCCAGCGCTATCCCAG
CAGCACCGTCAGCAGCACCATCATCACCACAACCACCGTGTCCAGGCTCC
GAGATGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGG
CCTCCAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGG
CGCACGGTAAGGCCCACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTG
AGGCATGCAGATCTCCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGG
AGAAATTGCGGCGAGGGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGT
CCTTGCCTACCGTACTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGA
AGTGGATGGAGCTCATCCTCAGCCTTCTCCTCCTCCTCATTATCCTCCTA
TCATCGCGTCTTGAGCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCC
ATGCCCGTGTTGCGCCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGC
AGCACCACCACCAGCAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGT
TACATACTCCAGCGGTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTC
TTCGTTTGGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAG
CAAGCACAGTCATGGCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGAT
GGGACGGCGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGC
AAAATGATGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCG
CCTTTTAAGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAA
GATGACATCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAG
GAGGAGAAGAGCGACGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCC
ACCAAGGCGGAAGCCACAGTGACAGTAGGTGATAAAAATAACGAAAATAG
CAGAGTACCAGCCACGACCGTGAAGACAACGACGACGACGACAACGAGCG
GCGAAAGTGGAAACATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTG
GCCTCGGCGATCTACGAAGTGACATACATGAGTGGAAGTACCTTGAGCTT
CGTATGGGATACGGTCATGCACGAATTGAATCACGTCAAAAAGACGGCAT
TGGCAAGGAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCG
GTGAGGCAGGAGCAGTTGCAGGAACAGAGGTAGGGTCGACAGACACAGGG
CATCCCACATCTCTGCGAGTGAGTCATCGAAGTAAAGGCGCGTATATGTA
CAGATTGTACATAAAGAGAAAGAGGTGATGTTGTAAATATTAACGTTGGA
ACGAGTCCAGAACAGCAACAAAGTTACCCACACG

Coding sequence (CDS) from alignment at scaffold_14:130890..133773+

>mRNA_5942 ID=mRNA_5942|Name=jgi.p|Nanoce1779_2|593210|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_14:130890..133773+ (Nannochloropsis oceanica)
ATGCGCGTACAATCTGGTAACCGCCGACATTGGTGGAGTGAGCGGGGGAG
ACATGCCTTGCAAGTGCTTGCACAGGAGGGGATTCATTTTGCTTGTCAAC
GCTATAAATACATCAACCACAAATCGGATAGGAATGGGGTGTGTTATTTT
GTGGCAGAAGACTCTACGGGTAAGGAAGAAACAGGATTTCGGGTCATGTC
TGCCCAGTGCATGATTGCGGGACTGGGAAATTTCTTCAATTTTCCCTGTG
TCCCGCGGCTGGTGGCGCGGGTGGCGTTGGGGTTTAGTCGATCACAATCC
TTGAGCTTGGAACCGAGGCAAATCGAGTTGATTAACGACATATTTGCAAG
CGAGGATAGTGCTGTCATGACAGACGGCTCGGGATTTATATCGCCCGATC
TTGTCTCACACTTGCCCCCGCATTTATACCAGGGGCGAGCCCTGCCTGCT
GCCCCGCTCATCGGGCCTTCCCTTGCTGTGCCTCCGTTTGCTGTTATCCA
AGTGCGGGTCATATGCCACATGGGTGGGTTTAAAGGCACCCTCCTTGTTC
ACCCACGCCTTCAAAACAAGATCCAGCTCCGACGTTCTTCCATGCTGAAA
TTTCCTCCTCCCAATCTGTCGGTTACTCCTTTGACTCGTCGGCCTAGCCT
GGACGTGCTGACAACCTTTCGTGTATTGAAAGCAAGCACCCGTCTCTCCC
GCGAATTGGTGCTGATCCTGCAGGCGCTGGAAGTACCTGACACCGTATTT
ATCAAACTATTGTGGTAG

Synonyms

Publications