jgi.p|Nanoce1779_2|593202, mRNA_5940 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593202
Unique Name	mRNA_5940
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2870
Alignment location	scaffold_14:125652..128521 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593288
Track	FilteredModels2
ProteinId	593202

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:125652..128521 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593202	gene_5940	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593202	mRNA_5940-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5940	CDS_5940	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:125652..128521+
coding sequence from alignment at scaffold_14:125652..128521+

mRNA sequence

>mRNA_5940 ID=mRNA_5940|Name=jgi.p|Nanoce1779_2|593202|organism=Nannochloropsis oceanica|type=mRNA|length=2870bp
TCGATTTATGCGCGTACAATTTGGTAACCGCCGACATTGGTGGAGTGAGC
GGGGGAGACATGCCTTGCAAGTGCTTGCACAGGAGGGGATTCATTTTGCT
TGTCGACGGTATAAATACATCAACCACAAATCGGATAGGAATGGGGTGTG
TTATTTTGTGGCAGAGGACTCTACGGGTAAGGAGGAAACAGGATTTCGGG
TCATGTCTGCCCAGTGCATGATTGCGGGACTGGGAAATTTCTTCAATTTT
CCCTGTGTCCCGCGGCTGGTGGCGCGGGTGGCGTTGGGGTTTAGTCGATC
ACAATCCTTGAGCTTGGAACCGAGGCAAATCGAGTTGATTAACGACATAT
TTGCAAGCGAGGATAGTGCTGTCATGACAGACGGCTCGGGATTTATATCG
CCCGATCTTGTCTCACACTTGCCCCCGCATTTATACCAGGGGCGAGCCCT
GCCTGCTGCCCCGCTCATCGGGCCTTCCCTTGCTGTGCCTCCGTTTGCTG
TTATCCAAGTGCGGGTCATATGCCACATGGGTGGGTTTAAAGGCACCCTC
CTTGTTCACCCACGCCTTCAAAACAAGATCCAGCTCCGACGTTCTTCCAT
GCTGAAATTTCCTCCTCCCAATCTGTCGGTTACTCCTTTGACTCGTCGGC
CTAGCCTGGACGTGCTGACAACCTTTCGTGTATTGAAAGCAAGCACCCGT
CTCTCCCGCGAATTGGTGCTGATCCTGCAGGCGCTGGAAGTACCTGACAC
CGTATTTATCAAACTGGTGGAGGACGAACTCAGCTTGCTGCGTTCTGCGT
GCACTGATGCAGAGCAGGCCGCGGCTCTGCTGCGGCGATCAAGTTCAACG
CTTATCCGCTCGTCGGCGGAGTGGCAGGTAGCAGAAATGTTGAAAGCAGG
ACATGGGGTAAACGAAGCATACATCCGAAAAACCCTCTTAGGCCTTCGCA
GTCGTGCACTGGTCAAGTTACAGCAGGGACGGGTCTTTTGTCCTTCTTCT
CTTTATGTGGTGGGGCAGCCGGACCCACTGGGTGTTCTCAAGCCTGACGA
GGTATACGTAAGTCATGGGCTACCGACAGGATATGAGGGCCTACCGGAAG
GAGGGACGGAGGATGGGGTCTACGAGGGGAAGGTGCTATTGGCAAGGCAC
CCCATTTATAATCCTGCACATGTACAAGCATTTCAGGCAGTGAAACAACC
CGCGCTTCAAGCTTTCCTAGGGCCACGGGCAGGAGTATTATTTTTCAGTG
TTCAAGGCACACCAAGCCCGGCCTCTCGATTATCGGAAGGGGATATGGAC
GGGGACACTTATTTTGTGTGTATGCATAAGGATATTGTGTCATTTGCGCG
TCCGATTCATGTACAGAAGATGGAGAGGAGCAAGAGCCGTGGTAGCAGTA
GTAGCAGCATCAGTGGTGGCTCCAGCGCTATCCCAGCAGCACCGTCAGCA
GCACCATCATCACCACAACCACCGTGTCCAGGCTCCGAGATGCTGACGGT
CGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTCCAGGTGGATG
CTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCACGGTAAGGCC
CACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGCATGCAGATCT
CCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGAAATTGCGGCGA
GGGCGCTTGATAGCGCCAAGACGGGGCTGCTGTGGTCCTTGCCTACCGTA
CTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGTGGATGGAGCTC
ATCCTCAGCCTTCTCCTCCGCCTCATTATCCTCCTATCATCGCGTCTTGA
GCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCGTGTTGCG
CCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGCAGCACCACCAG
CAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTACATACTCCAGCG
GTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTTGGACAGT
GACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCACAGTCATG
GCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGATGGGACGGCGGTACC
ATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGATGACCCC
GGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTAAGCAGGC
CTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACATCAGCGA
ACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGAAGAGCGA
CGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCCACCAAGGCGGAAGC
CACAGTGACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTACCAGCCA
CGACCGTGAAGACAACGACGACGACGACAACGAGCGGCGAAAGTGGAAAC
ATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGGCGATCTA
CGAAGTGACATACATGAGTGGAAGTACCTTGAGCTTCGTATGGGATACGG
TCATGCACGAATTGAATCACGTCAAAAAGACGGCATTGGCAAGGAGGGAG
GTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGCAGGAGCA
GTTGCAGGAACAGAGGTAGGGTCGACAGACACAGGGCATCCCACATCTCT
GCGAGTGAGTCATCGAAGTAAAGGCGCGTATATGTACAGATTGTACATAA
AGAGAAAGAGGTGATGTTGTAAATATTAACGTTGGAACGAGTCCAGAACA
GCAACAAAGTTACCCACACG

protein sequence of jgi.p|Nanoce1779_2|593202

>mRNA_5940-protein ID=mRNA_5940-protein|Name=jgi.p|Nanoce1779_2|593202|organism=Nannochloropsis oceanica|type=polypeptide|length=904bp
MRVQFGNRRHWWSERGRHALQVLAQEGIHFACRRYKYINHKSDRNGVCYF
VAEDSTGKEETGFRVMSAQCMIAGLGNFFNFPCVPRLVARVALGFSRSQS
LSLEPRQIELINDIFASEDSAVMTDGSGFISPDLVSHLPPHLYQGRALPA
APLIGPSLAVPPFAVIQVRVICHMGGFKGTLLVHPRLQNKIQLRRSSMLK
FPPPNLSVTPLTRRPSLDVLTTFRVLKASTRLSRELVLILQALEVPDTVF
IKLVEDELSLLRSACTDAEQAAALLRRSSSTLIRSSAEWQVAEMLKAGHG
VNEAYIRKTLLGLRSRALVKLQQGRVFCPSSLYVVGQPDPLGVLKPDEVY
VSHGLPTGYEGLPEGGTEDGVYEGKVLLARHPIYNPAHVQAFQAVKQPAL
QAFLGPRAGVLFFSVQGTPSPASRLSEGDMDGDTYFVCMHKDIVSFARPI
HVQKMERSKSRGSSSSSISGGSSAIPAAPSAAPSSPQPPCPGSEMLTVVG
PFHFNAESVGLQVDAAVMKRCLESCMAHGKAHDIVASASDWWLRHADLRG
ACSSNCLILGEIAARALDSAKTGLLWSLPTVLKPAHRPSYLDRSGWSSSS
AFSSASLSSYHRVLSYSEVDTLLGRIHARVAPLLADDKSSSSSSSTTSSS
SSMRGGKKNVTYSSGGGNAFISPADTLRLDSDLRVEGSAAFLEQAQSWLK
AYRQSYARRMGRRYHAQQQQRQQQQQQNDDPGEYQALKSEVLAPFKQAFL
ATARASGGDKMTSANKRGDEEEGIGAGGEERRPLQLLADNTLPTKAEATV
TVGDKNNENSRVPATTVKTTTTTTTSGESGNINSRFDRRRLAVASAIYEV
TYMSGSTLSFVWDTVMHELNHVKKTALARREVAEKEIGEAIVAVRQEQLQ
EQR*

mRNA from alignment at scaffold_14:125652..128521+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5940 ID=mRNA_5940|Name=jgi.p|Nanoce1779_2|593202|organism=Nannochloropsis oceanica|type=mRNA|length=2870bp|location=Sequence derived from alignment at scaffold_14:125652..128521+ (Nannochloropsis oceanica)
TCGATTTATGCGCGTACAATTTGGTAACCGCCGACATTGGTGGAGTGAGC
GGGGGAGACATGCCTTGCAAGTGCTTGCACAGGAGGGGATTCATTTTGCT
TGTCGACGGTATAAATACATCAACCACAAATCGGATAGGAATGGGGTGTG
TTATTTTGTGGCAGAGGACTCTACGGGTAAGGAGGAAACAGGATTTCGGG
TCATGTCTGCCCAGTGCATGATTGCGGGACTGGGAAATTTCTTCAATTTT
CCCTGTGTCCCGCGGCTGGTGGCGCGGGTGGCGTTGGGGTTTAGTCGATC
ACAATCCTTGAGCTTGGAACCGAGGCAAATCGAGTTGATTAACGACATAT
TTGCAAGCGAGGATAGTGCTGTCATGACAGACGGCTCGGGATTTATATCG
CCCGATCTTGTCTCACACTTGCCCCCGCATTTATACCAGGGGCGAGCCCT
GCCTGCTGCCCCGCTCATCGGGCCTTCCCTTGCTGTGCCTCCGTTTGCTG
TTATCCAAGTGCGGGTCATATGCCACATGGGTGGGTTTAAAGGCACCCTC
CTTGTTCACCCACGCCTTCAAAACAAGATCCAGCTCCGACGTTCTTCCAT
GCTGAAATTTCCTCCTCCCAATCTGTCGGTTACTCCTTTGACTCGTCGGC
CTAGCCTGGACGTGCTGACAACCTTTCGTGTATTGAAAGCAAGCACCCGT
CTCTCCCGCGAATTGGTGCTGATCCTGCAGGCGCTGGAAGTACCTGACAC
CGTATTTATCAAACTGGTGGAGGACGAACTCAGCTTGCTGCGTTCTGCGT
GCACTGATGCAGAGCAGGCCGCGGCTCTGCTGCGGCGATCAAGTTCAACG
CTTATCCGCTCGTCGGCGGAGTGGCAGGTAGCAGAAATGTTGAAAGCAGG
ACATGGGGTAAACGAAGCATACATCCGAAAAACCCTCTTAGGCCTTCGCA
GTCGTGCACTGGTCAAGTTACAGCAGGGACGGGTCTTTTGTCCTTCTTCT
CTTTATGTGGTGGGGCAGCCGGACCCACTGGGTGTTCTCAAGCCTGACGA
GGTATACGTAAGTCATGGGCTACCGACAGGATATGAGGGCCTACCGGAAG
GAGGGACGGAGGATGGGGTCTACGAGGGGAAGGTGCTATTGGCAAGGCAC
CCCATTTATAATCCTGCACATGTACAAGCATTTCAGGCAGTGAAACAACC
CGCGCTTCAAGCTTTCCTAGGGCCACGGGCAGGAGTATTATTTTTCAGTG
TTCAAGGCACACCAAGCCCGGCCTCTCGATTATCGGAAGGGGATATGGAC
GGGGACACTTATTTTGTGTGTATGCATAAGGATATTGTGTCATTTGCGCG
TCCGATTCATGTACAGAAGATGGAGAGGAGCAAGAGCCGTGGTAGCAGTA
GTAGCAGCATCAGTGGTGGCTCCAGCGCTATCCCAGCAGCACCGTCAGCA
GCACCATCATCACCACAACCACCGTGTCCAGGCTCCGAGATGCTGACGGT
CGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTCCAGGTGGATG
CTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCACGGTAAGGCC
CACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGCATGCAGATCT
CCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGAAATTGCGGCGA
GGGCGCTTGATAGCGCCAAGACGGGGCTGCTGTGGTCCTTGCCTACCGTA
CTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGTGGATGGAGCTC
ATCCTCAGCCTTCTCCTCCGCCTCATTATCCTCCTATCATCGCGTCTTGA
GCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCGTGTTGCG
CCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGCAGCACCACCAG
CAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTACATACTCCAGCG
GTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTTGGACAGT
GACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCACAGTCATG
GCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGATGGGACGGCGGTACC
ATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGATGACCCC
GGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTAAGCAGGC
CTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACATCAGCGA
ACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGAAGAGCGA
CGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCCACCAAGGCGGAAGC
CACAGTGACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTACCAGCCA
CGACCGTGAAGACAACGACGACGACGACAACGAGCGGCGAAAGTGGAAAC
ATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGGCGATCTA
CGAAGTGACATACATGAGTGGAAGTACCTTGAGCTTCGTATGGGATACGG
TCATGCACGAATTGAATCACGTCAAAAAGACGGCATTGGCAAGGAGGGAG
GTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGCAGGAGCA
GTTGCAGGAACAGAGGTAGGGTCGACAGACACAGGGCATCCCACATCTCT
GCGAGTGAGTCATCGAAGTAAAGGCGCGTATATGTACAGATTGTACATAA
AGAGAAAGAGGTGATGTTGTAAATATTAACGTTGGAACGAGTCCAGAACA
GCAACAAAGTTACCCACACG

Coding sequence (CDS) from alignment at scaffold_14:125652..128521+

>mRNA_5940 ID=mRNA_5940|Name=jgi.p|Nanoce1779_2|593202|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_14:125652..128521+ (Nannochloropsis oceanica)
ATGCGCGTACAATTTGGTAACCGCCGACATTGGTGGAGTGAGCGGGGGAG
ACATGCCTTGCAAGTGCTTGCACAGGAGGGGATTCATTTTGCTTGTCGAC
GGTATAAATACATCAACCACAAATCGGATAGGAATGGGGTGTGTTATTTT
GTGGCAGAGGACTCTACGGGTAAGGAGGAAACAGGATTTCGGGTCATGTC
TGCCCAGTGCATGATTGCGGGACTGGGAAATTTCTTCAATTTTCCCTGTG
TCCCGCGGCTGGTGGCGCGGGTGGCGTTGGGGTTTAGTCGATCACAATCC
TTGAGCTTGGAACCGAGGCAAATCGAGTTGATTAACGACATATTTGCAAG
CGAGGATAGTGCTGTCATGACAGACGGCTCGGGATTTATATCGCCCGATC
TTGTCTCACACTTGCCCCCGCATTTATACCAGGGGCGAGCCCTGCCTGCT
GCCCCGCTCATCGGGCCTTCCCTTGCTGTGCCTCCGTTTGCTGTTATCCA
AGTGCGGGTCATATGCCACATGGGTGGGTTTAAAGGCACCCTCCTTGTTC
ACCCACGCCTTCAAAACAAGATCCAGCTCCGACGTTCTTCCATGCTGAAA
TTTCCTCCTCCCAATCTGTCGGTTACTCCTTTGACTCGTCGGCCTAGCCT
GGACGTGCTGACAACCTTTCGTGTATTGAAAGCAAGCACCCGTCTCTCCC
GCGAATTGGTGCTGATCCTGCAGGCGCTGGAAGTACCTGACACCGTATTT
ATCAAACTGGTGGAGGACGAACTCAGCTTGCTGCGTTCTGCGTGCACTGA
TGCAGAGCAGGCCGCGGCTCTGCTGCGGCGATCAAGTTCAACGCTTATCC
GCTCGTCGGCGGAGTGGCAGGTAGCAGAAATGTTGAAAGCAGGACATGGG
GTAAACGAAGCATACATCCGAAAAACCCTCTTAGGCCTTCGCAGTCGTGC
ACTGGTCAAGTTACAGCAGGGACGGGTCTTTTGTCCTTCTTCTCTTTATG
TGGTGGGGCAGCCGGACCCACTGGGTGTTCTCAAGCCTGACGAGGTATAC
GTAAGTCATGGGCTACCGACAGGATATGAGGGCCTACCGGAAGGAGGGAC
GGAGGATGGGGTCTACGAGGGGAAGGTGCTATTGGCAAGGCACCCCATTT
ATAATCCTGCACATGTACAAGCATTTCAGGCAGTGAAACAACCCGCGCTT
CAAGCTTTCCTAGGGCCACGGGCAGGAGTATTATTTTTCAGTGTTCAAGG
CACACCAAGCCCGGCCTCTCGATTATCGGAAGGGGATATGGACGGGGACA
CTTATTTTGTGTGTATGCATAAGGATATTGTGTCATTTGCGCGTCCGATT
CATGTACAGAAGATGGAGAGGAGCAAGAGCCGTGGTAGCAGTAGTAGCAG
CATCAGTGGTGGCTCCAGCGCTATCCCAGCAGCACCGTCAGCAGCACCAT
CATCACCACAACCACCGTGTCCAGGCTCCGAGATGCTGACGGTCGTTGGG
CCTTTCCATTTCAATGCCGAGTCGGTCGGCCTCCAGGTGGATGCTGCGGT
CATGAAACGGTGCTTGGAGAGCTGCATGGCGCACGGTAAGGCCCACGATA
TCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGCATGCAGATCTCCGTGGG
GCCTGCTCGTCGAATTGCTTGATTCTGGGAGAAATTGCGGCGAGGGCGCT
TGATAGCGCCAAGACGGGGCTGCTGTGGTCCTTGCCTACCGTACTCAAGC
CTGCTCATCGCCCAAGTTATCTGGACCGAAGTGGATGGAGCTCATCCTCA
GCCTTCTCCTCCGCCTCATTATCCTCCTATCATCGCGTCTTGAGCTACTC
CGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCGTGTTGCGCCCCTTT
TGGCGGACGACAAGAGCAGTAGCAGCAGCAGCAGCACCACCAGCAGCAGT
AGTAGTATGAGAGGTGGCAAAAAGAATGTTACATACTCCAGCGGTGGTGG
CAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTTGGACAGTGACTTGA
GGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCACAGTCATGGCTCAAG
GCTTACCGACAGTCGTATGCCCGAAGGATGGGACGGCGGTACCATGCGCA
GCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGATGACCCCGGAGAGT
ATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTAAGCAGGCCTTCCTT
GCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACATCAGCGAACAAGAG
AGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGAAGAGCGACGGCCCT
TGCAGCTTCTGGCGGACAATACACTTCCCACCAAGGCGGAAGCCACAGTG
ACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTACCAGCCACGACCGT
GAAGACAACGACGACGACGACAACGAGCGGCGAAAGTGGAAACATCAACA
GCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGGCGATCTACGAAGTG
ACATACATGAGTGGAAGTACCTTGAGCTTCGTATGGGATACGGTCATGCA
CGAATTGAATCACGTCAAAAAGACGGCATTGGCAAGGAGGGAGGTGGCGG
AAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGCAGGAGCAGTTGCAG
GAACAGAGGTAG

Synonyms

Publications