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Properties
| Property Name | Value |
|---|
| TranscriptId | 593286 |
| Track | FilteredModels2 |
| ProteinId | 593200 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:120938..124239 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5939 ID=mRNA_5939|Name=jgi.p|Nanoce1779_2|593200|organism=Nannochloropsis oceanica|type=mRNA|length=3135bp
ACAGCATTACCATCATGAGGCCCTTCTCTACCCATGGAAGTATAAAAGTT
TCGCCCAACACCCACTCCTCGCCACCGTCTCCGCCTCCAATTACCAAGTC
AAAGACATCCCCACAGTCCTTGCCCGCCTCGCCAACCAAGGCCACAATGC
TCAATGCAGGCACAGGAACAGCATTCAGTCGATTCATAAGTAAAATGGAA
TTTAAGAGTCCTGCGTTTGATTTTGGGCGAGTTGGGGGCAAGCACCGGGA
AGAATGTAAGAATATTGTTAGCATGGCGGGGGAGAAATTGACAGAGGTCA
AGAGCAGCAGCGGTGCCGACACCTCGCACCCGAAAATCAAGAGATGGGGG
ATTCAGCACACCATGGGGACCAGACAGAACAACAATGAACCTAAAAAAAA
AGGAAAAGACATCATTATTGGCATTACGGCATCGGGGCAGCGGGTCCATG
AGCAGGAGGATGAGTTCGGGTTGAGTGCCGCCATTCAATGGAGCAGTCCT
TGCAACAAGCCTCCTACTTCTTTCTCTTCGTCGACTTCGATGTCCTGGAT
CCTATCAATGAGCAAGGATGATGAGGAAGAGAAGGGAGGCATAAGTGTTG
ACAGCAGTCCGAGCTTGACTGACATTAGGGAGGACAGAGATGTCCCTCCT
TTGGAATCGCGGCCGGAGGGAAGCGTCGACGACGAAGACATTTACGCTGA
GGAAGAAGACGAGGACAAAGACGAGGACGACGAGGAAGATCAAGAAGAAG
ATAAGTGCGAGGCAGCAGAAGAGAGCAAACGAGGAGGGGCGGGGTCGACC
GCAGATTTTATCCACGAACAGATCCTGTCTTTTCAGGTCTCATTTGGACA
TGGACCGACAGGGCTTGTGGTCGCTGATACCAAGGCAGGCAAAGGCACAT
TCGTCGAGTCCTTTCTCCAGATTCCCACCAAAAATGGTCTTGTGTCGACG
GCTATCGAGCTCTCTGGGCGGGTGAGAGTGGGTGACTTGATCACACATGT
AGGAGGCACGGACGTGCAGTTTAGCTCGGGGGTGGTGGTAAGCGATTTAC
TCGAAAAGGGTAGCCGACCCGTGACGGTATCTTTTGAGAGGTACTTTCAA
CGGTATTCGTTTCAGGAGATTACCGAAGATCCTCGCAAGGTGCCTTTCTA
CTTCAAATACCTTTTCACGGAAGTAGAGGATCCGCGACACGAGCAAGCCA
AAGTGATGCTGTTGATTGAATCTGAGCAGTACACTTCCCAACATAAGAAT
ATGACGGCTGCCAATCGTCTGAAGGAGAGCCGGCGAATTTTCGACAAATT
TTTTGATGCACGTACGTAACTTTCTTTCTTCTTTTCATCGATGTATTCTT
ATTCCTTTTTGGTACGTTTGTATATGTCTCGGCTCTTTCTTGCCTTCTCT
CTTCTGCATCCTCCCTCCATTCCTCCTCCAAAACTACGTTTCCTTCCCCC
TTTCCCTTTAAATCTCCACGCCATTTTGTGTACAGGCTCCCAATTTGAAG
TAACGACCGCCATAACCCCTCCTGTCCTTGAAAAGCTCCAGAGCCAGTAC
GGCACTCCTTCTCCCCGACGTCGCCAATGGCAGCCTTCCACAAGCTCCTT
CCTCCGTCCTTCCCTCCCTCCCTTTTCCCCTTCGTCCCAGCCACCCCTCC
AAGACGAGGATGAGGACGGTAGGGAAGAAGCGGCCTTGTTTTCTGTCCCC
TCCGACGTGTTCGACGAGGCCCGCCTTCAAATCCAAACAGATATCGCCCG
CAGGAGGCACCCAGACTTCTGCAAGTCCGCAGCACATCATAAAATGGTCG
GGTATCTCTCCAAGAGCCCCGAGTTTATCCCCCTTAATCCATTGATGGTG
CTTGAAGACGACGATATGGTCCAATACTTCATGCTTTATTTGATGCAAAC
GCGAAAGCATGCCACTCTCCGGTGCTATCTCGACATGGAGCGGTTTATTA
AACCCCGCGTGGCGGAGCTGGAGGCCCTACTCAAACAGAAGTTGGTTGGA
TTGGAGAAGCCGAAGCAAGAAGTAAGGGCGCTGATGCAAGCAGTCCTGCG
TGTTTTTAGCCTGTATCTGTGTAATGGATCTTATTTGGAGGTCACGCTCC
AGCCGCTCACTCGTCTCAATCAATGGCTTCGGGGCGTGTTGAAGTGCAGG
ACAGACATCGCGCGGATTCAACGTCGAGCCTGCAGGCTTGCGACCAGCAA
GGCAGCAGAGACTCAAATTCTGGGGAGTCAACTTTTGAAGGAAGCACACA
AGCAGCAGCAACACGAGCCGGACGCGTTTTTTAACTTGTCGGTGCCCGAG
GCACTGGGCATTGGCCACGAGGTCTTGGAGGCACAACGCTCCCTCTTGCG
AGAGTTGGCATCCGATGTGTACCCTCGCTTCCAATCCCATCCTTTGTACG
AAGAGCTATGCCAAGAGATTGGTCCAGAATGGAGGACGGCGCGGATGAGT
GGCCGGCCATTAAGCTTGCGACCGGGGAGTATGAAGAGGCTCTTGCGGCG
GGTCAAGCTACCGAGGGAGTTCGCAATCCATCGGGCTCTTTTGTCTACTG
TTCTGCCATCACCGTGCTCGTCCTTGTCTTCACCACAGCAGCACGGTCTG
TTCATCTCTTTATCGGATTCTCCCTCCTCGCTGGACCGGCGATTGCGGCT
ACAGGAGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAAGCTATACCAC
CCGCACGGGCCGAGATAGAAAGCCCGGCTGATTGGCTCATGGTATTCGAT
ACCGAATTCAGTCCTCACATGGCCATCAAAGTGAGAACGACCAAGCAAAT
ACCCATTTCTGCCTACGCCAAATCACTTAGCCTAAAATCCAAGCCTTCCT
CCTCCTCTTCATCGTCTCCCTCCCCCTCTTCTCCTGCTGCCCCTTCCCCT
TTACCTGCCGGCATTGAGAACTTCATGGTCCCAGAAGAATTTCCCACAAA
ACTAGGTACCACTGCTCCTGGTCCAGTTCTCTTTAATTTTTTAGTCCCTG
GGAAGCATGACAAGCCTTTTTACGGCGCGTGTCTAATTATGTATCGTCCG
GCCAGTGAGGCCTTGCCAGTAGACGAAGGAGACTTGGATCTTACACTCTC
TCCAGCAGGGGGGCAGCAGCAGCAGCAGCAGCAGC back to topprotein sequence of jgi.p|Nanoce1779_2|593200 >mRNA_5939-protein ID=mRNA_5939-protein|Name=jgi.p|Nanoce1779_2|593200|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MRPFSTHGSIKVSPNTHSSPPSPPPITKSKTSPQSLPASPTKATMLNAGT
GTAFSRFISKMEFKSPAFDFGRVGGKHREECKNIVSMAGEKLTEVKSSSG
ADTSHPKIKRWGIQHTMGTRQNNNEPKKKGKDIIIGITASGQRVHEQEDE
FGLSAAIQWSSPCNKPPTSFSSSTSMSWILSMSKDDEEEKGGISVDSSPS
LTDIREDRDVPPLESRPEGSVDDEDIYAEEEDEDKDEDDEEDQEEDKCEA
AEESKRGGAGSTADFIHEQILSFQVSFGHGPTGLVVADTKAGKGTFVESF
LQIPTKNGLVSTAIELSGRVRVGDLITHVGGTDVQFSSGVVVSDLLEKGS
RPVTVSFERYFQRYSFQEITEDPRKVPFYFKYLFTEVEDPRHEQAKVMLL
IESEQYTSQHKNMTAANRLKESRRIFDKFFDART* back to topmRNA from alignment at scaffold_14:120938..124239- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5939 ID=mRNA_5939|Name=jgi.p|Nanoce1779_2|593200|organism=Nannochloropsis oceanica|type=mRNA|length=3302bp|location=Sequence derived from alignment at scaffold_14:120938..124239- (Nannochloropsis oceanica)
ACAGCATTACCATCATGAGGCCCTTCTCTACCCATGGAAGTATAAAAGTT
TCGCCCAACACCCACTCCTCGCCACCGTCTCCGCCTCCAATTACCAAGTC
AAAGACATCCCCACAGTCCTTGCCCGCCTCGCCAACCAAGGCCACAATGC
TCAATGCAGGCACAGGAACAGCATTCAGTCGATTCATAAGTAAAATGGAA
TTTAAGAGTCCTGCGTTTGATTTTGGGCGAGTTGGGGGCAAGCACCGGGA
AGAATGTAAGAATATTGTTAGCATGGCGGGGGAGAAATTGACAGAGGTCA
AGAGCAGCAGCGGTGCCGACACCTCGCACCCGAAAATCAAGAGATGGGGG
ATTCAGCACACCATGGGGACCAGACAGAACAACAATGAACCTAAAAAAAA
AGGAAAAGACATCATTATTGGCATTACGGCATCGGGGCAGCGGGTCCATG
AGCAGGAGGATGAGTTCGGGTTGAGTGCCGCCATTCAATGGAGCAGTCCT
TGCAACAAGCCTCCTACTTCTTTCTCTTCGTCGACTTCGATGTCCTGGAT
CCTATCAATGAGCAAGGATGATGAGGAAGAGAAGGGAGGCATAAGTGTTG
ACAGCAGTCCGAGCTTGACTGACATTAGGGAGGACAGAGATGTCCCTCCT
TTGGAATCGCGGCCGGAGGGAAGCGTCGACGACGAAGACATTTACGCTGA
GGAAGAAGACGAGGACAAAGACGAGGACGACGAGGAAGATCAAGAAGAAG
ATAAGTGCGAGGCAGCAGAAGAGAGCAAACGAGGAGGGGCGGGGTCGACC
GCAGATTTTATCCACGAACAGATCCTGTCTTTTCAGGTCTCATTTGGACA
TGGACCGACAGGGCTTGTGGTCGCTGATACCAAGGCAGGCAAAGGCACAT
TCGTCGAGTCCTTTCTCCAGATTCCCACCAAAAATGGTCTTGTGTCGACG
GCTATCGAGCTCTCTGGGCGGGTGAGAGTGGGTGACTTGATCACACATGT
AGGAGGCACGGACGTGCAGTTTAGCTCGGGGGTGGTGGTAAGCGATTTAC
TCGAAAAGGGTAGCCGACCCGTGACGGTATCTTTTGAGAGGTACTTTCAA
CGGTATTCGTTTCAGGTATGTGCAAAAGAAAAGGCGGTCTTTATTCAAAG
GAAGGTGATCTCTGTAGAAGATGGCGAAGTGAGCTGCCTCGGATTGCAGT
CGGTGCATACCTTATTCCCCCCTCCCTCATGCCTTCCCTCCCTCACTTCC
GCCATCAAACCCCTTAAACCCGTTTCACTCAGGAGATTACCGAAGATCCT
CGCAAGGTGCCTTTCTACTTCAAATACCTTTTCACGGAAGTAGAGGATCC
GCGACACGAGCAAGCCAAAGTGATGCTGTTGATTGAATCTGAGCAGTACA
CTTCCCAACATAAGAATATGACGGCTGCCAATCGTCTGAAGGAGAGCCGG
CGAATTTTCGACAAATTTTTTGATGCACGTACGTAACTTTCTTTCTTCTT
TTCATCGATGTATTCTTATTCCTTTTTGGTACGTTTGTATATGTCTCGGC
TCTTTCTTGCCTTCTCTCTTCTGCATCCTCCCTCCATTCCTCCTCCAAAA
CTACGTTTCCTTCCCCCTTTCCCTTTAAATCTCCACGCCATTTTGTGTAC
AGGCTCCCAATTTGAAGTAACGACCGCCATAACCCCTCCTGTCCTTGAAA
AGCTCCAGAGCCAGTACGGCACTCCTTCTCCCCGACGTCGCCAATGGCAG
CCTTCCACAAGCTCCTTCCTCCGTCCTTCCCTCCCTCCCTTTTCCCCTTC
GTCCCAGCCACCCCTCCAAGACGAGGATGAGGACGGTAGGGAAGAAGCGG
CCTTGTTTTCTGTCCCCTCCGACGTGTTCGACGAGGCCCGCCTTCAAATC
CAAACAGATATCGCCCGCAGGAGGCACCCAGACTTCTGCAAGTCCGCAGC
ACATCATAAAATGGTCGGGTATCTCTCCAAGAGCCCCGAGTTTATCCCCC
TTAATCCATTGATGGTGCTTGAAGACGACGATATGGTCCAATACTTCATG
CTTTATTTGATGCAAACGCGAAAGCATGCCACTCTCCGGTGCTATCTCGA
CATGGAGCGGTTTATTAAACCCCGCGTGGCGGAGCTGGAGGCCCTACTCA
AACAGAAGTTGGTTGGATTGGAGAAGCCGAAGCAAGAAGTAAGGGCGCTG
ATGCAAGCAGTCCTGCGTGTTTTTAGCCTGTATCTGTGTAATGGATCTTA
TTTGGAGGTCACGCTCCAGCCGCTCACTCGTCTCAATCAATGGCTTCGGG
GCGTGTTGAAGTGCAGGACAGACATCGCGCGGATTCAACGTCGAGCCTGC
AGGCTTGCGACCAGCAAGGCAGCAGAGACTCAAATTCTGGGGAGTCAACT
TTTGAAGGAAGCACACAAGCAGCAGCAACACGAGCCGGACGCGTTTTTTA
ACTTGTCGGTGCCCGAGGCACTGGGCATTGGCCACGAGGTCTTGGAGGCA
CAACGCTCCCTCTTGCGAGAGTTGGCATCCGATGTGTACCCTCGCTTCCA
ATCCCATCCTTTGTACGAAGAGCTATGCCAAGAGATTGGTCCAGAATGGA
GGACGGCGCGGATGAGTGGCCGGCCATTAAGCTTGCGACCGGGGAGTATG
AAGAGGCTCTTGCGGCGGGTCAAGCTACCGAGGGAGTTCGCAATCCATCG
GGCTCTTTTGTCTACTGTTCTGCCATCACCGTGCTCGTCCTTGTCTTCAC
CACAGCAGCACGGTCTGTTCATCTCTTTATCGGATTCTCCCTCCTCGCTG
GACCGGCGATTGCGGCTACAGGAGCCACAGCTGCAGCAGCAGCAGCAGCA
GCAGCAAGCTATACCACCCGCACGGGCCGAGATAGAAAGCCCGGCTGATT
GGCTCATGGTATTCGATACCGAATTCAGTCCTCACATGGCCATCAAAGTG
AGAACGACCAAGCAAATACCCATTTCTGCCTACGCCAAATCACTTAGCCT
AAAATCCAAGCCTTCCTCCTCCTCTTCATCGTCTCCCTCCCCCTCTTCTC
CTGCTGCCCCTTCCCCTTTACCTGCCGGCATTGAGAACTTCATGGTCCCA
GAAGAATTTCCCACAAAACTAGGTACCACTGCTCCTGGTCCAGTTCTCTT
TAATTTTTTAGTCCCTGGGAAGCATGACAAGCCTTTTTACGGCGCGTGTC
TAATTATGTATCGTCCGGCCAGTGAGGCCTTGCCAGTAGACGAAGGAGAC
TTGGATCTTACACTCTCTCCAGCAGGGGGGCAGCAGCAGCAGCAGCAGCA
GC back to topCoding sequence (CDS) from alignment at scaffold_14:120938..124239- >mRNA_5939 ID=mRNA_5939|Name=jgi.p|Nanoce1779_2|593200|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_14:120938..124239- (Nannochloropsis oceanica)
GAGATTACCGAAGATCCTCGCAAGGTGCCTTTCTACTTCAAATACCTTTT
CACGGAAGTAGAGGATCCGCGACACGAGCAAGCCAAAGTGATGCTGTTGA
TTGAATCTGAGCAGTACACTTCCCAACATAAGAATATGACGGCTGCCAAT
CGTCTGAAGGAGAGCCGGCGAATTTTCGACAAATTTTTTGATGCACGTAC
GTAAATGAGGCCCTTCTCTACCCATGGAAGTATAAAAGTTTCGCCCAACA
CCCACTCCTCGCCACCGTCTCCGCCTCCAATTACCAAGTCAAAGACATCC
CCACAGTCCTTGCCCGCCTCGCCAACCAAGGCCACAATGCTCAATGCAGG
CACAGGAACAGCATTCAGTCGATTCATAAGTAAAATGGAATTTAAGAGTC
CTGCGTTTGATTTTGGGCGAGTTGGGGGCAAGCACCGGGAAGAATGTAAG
AATATTGTTAGCATGGCGGGGGAGAAATTGACAGAGGTCAAGAGCAGCAG
CGGTGCCGACACCTCGCACCCGAAAATCAAGAGATGGGGGATTCAGCACA
CCATGGGGACCAGACAGAACAACAATGAACCTAAAAAAAAAGGAAAAGAC
ATCATTATTGGCATTACGGCATCGGGGCAGCGGGTCCATGAGCAGGAGGA
TGAGTTCGGGTTGAGTGCCGCCATTCAATGGAGCAGTCCTTGCAACAAGC
CTCCTACTTCTTTCTCTTCGTCGACTTCGATGTCCTGGATCCTATCAATG
AGCAAGGATGATGAGGAAGAGAAGGGAGGCATAAGTGTTGACAGCAGTCC
GAGCTTGACTGACATTAGGGAGGACAGAGATGTCCCTCCTTTGGAATCGC
GGCCGGAGGGAAGCGTCGACGACGAAGACATTTACGCTGAGGAAGAAGAC
GAGGACAAAGACGAGGACGACGAGGAAGATCAAGAAGAAGATAAGTGCGA
GGCAGCAGAAGAGAGCAAACGAGGAGGGGCGGGGTCGACCGCAGATTTTA
TCCACGAACAGATCCTGTCTTTTCAGGTCTCATTTGGACATGGACCGACA
GGGCTTGTGGTCGCTGATACCAAGGCAGGCAAAGGCACATTCGTCGAGTC
CTTTCTCCAGATTCCCACCAAAAATGGTCTTGTGTCGACGGCTATCGAGC
TCTCTGGGCGGGTGAGAGTGGGTGACTTGATCACACATGTAGGAGGCACG
GACGTGCAGTTTAGCTCGGGGGTGGTGGTAAGCGATTTACTCGAAAAGGG
TAGCCGACCCGTGACGGTATCTTTTGAGAGGTACTTTCAACGGTATTCGT
TTCAGGAGATTACCGAAGATCCTCGCAAGGTGCCTTTCTACTTCAAATAC
CTTTTCACGGAAGTAGAGGATCCGCGACACGAGCAAGCCAAAGTGATGCT
GTTGATTGAATCTGAGCAGTACACTTCCCAACATAAGAATATGACGGCTG
CCAATCGTCTGAAGGAGAGCCGGCGAATTTTCGACAAATTTTTTGATGCA
CGTACGTAAATGAGGCCCTTCTCTACCCATGGAAGTATAAAAGTTTCGCC
CAACACCCACTCCTCGCCACCGTCTCCGCCTCCAATTACCAAGTCAAAGA
CATCCCCACAGTCCTTGCCCGCCTCGCCAACCAAGGCCACAATGCTCAAT
GCAGGCACAGGAACAGCATTCAGTCGATTCATAAGTAAAATGGAATTTAA
GAGTCCTGCGTTTGATTTTGGGCGAGTTGGGGGCAAGCACCGGGAAGAAT
GTAAGAATATTGTTAGCATGGCGGGGGAGAAATTGACAGAGGTCAAGAGC
AGCAGCGGTGCCGACACCTCGCACCCGAAAATCAAGAGATGGGGGATTCA
GCACACCATGGGGACCAGACAGAACAACAATGAACCTAAAAAAAAAGGAA
AAGACATCATTATTGGCATTACGGCATCGGGGCAGCGGGTCCATGAGCAG
GAGGATGAGTTCGGGTTGAGTGCCGCCATTCAATGGAGCAGTCCTTGCAA
CAAGCCTCCTACTTCTTTCTCTTCGTCGACTTCGATGTCCTGGATCCTAT
CAATGAGCAAGGATGATGAGGAAGAGAAGGGAGGCATAAGTGTTGACAGC
AGTCCGAGCTTGACTGACATTAGGGAGGACAGAGATGTCCCTCCTTTGGA
ATCGCGGCCGGAGGGAAGCGTCGACGACGAAGACATTTACGCTGAGGAAG
AAGACGAGGACAAAGACGAGGACGACGAGGAAGATCAAGAAGAAGATAAG
TGCGAGGCAGCAGAAGAGAGCAAACGAGGAGGGGCGGGGTCGACCGCAGA
TTTTATCCACGAACAGATCCTGTCTTTTCAGGTCTCATTTGGACATGGAC
CGACAGGGCTTGTGGTCGCTGATACCAAGGCAGGCAAAGGCACATTCGTC
GAGTCCTTTCTCCAGATTCCCACCAAAAATGGTCTTGTGTCGACGGCTAT
CGAGCTCTCTGGGCGGGTGAGAGTGGGTGACTTGATCACACATGTAGGAG
GCACGGACGTGCAGTTTAGCTCGGGGGTGGTGGTAAGCGATTTACTCGAA
AAGGGTAGCCGACCCGTGACGGTATCTTTTGAGAGGTACTTTCAACGGTA
TTCGTTTCAG back to top
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