jgi.p|Nanoce1779_2|593199, mRNA_5938 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593199
Unique Name	mRNA_5938
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2654
Alignment location	scaffold_14:118307..120960 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593285
Track	FilteredModels2
ProteinId	593199

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:118307..120960 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593199	gene_5938	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593199	mRNA_5938-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5938	CDS_5938	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:118307..120960-
coding sequence from alignment at scaffold_14:118307..120960-

mRNA sequence

>mRNA_5938 ID=mRNA_5938|Name=jgi.p|Nanoce1779_2|593199|organism=Nannochloropsis oceanica|type=mRNA|length=2654bp
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGATATGTAGTCCATTGATCAATGTGGATTTGACATTAAGTCAGTCGATG
GAAGGGAGGACAGCAGGAGGACAGCTGAAAGGGGGGGAGGGGCGGATGCC
CTTACAGTCTTGTCCTGAGATAGCGGCAGTTGAATCGCTAGAGTCCCTTC
CTGGGCCTGCGGAATCGTCGCGGACCACTACTTCTGTCACACCCTTTCCT
ACCATTGTTGCTGATAATGCTGATGCCAATGCGAGCCGGTCAATGACAAG
TACCACCCACTCTTCTTTTTCCTCAGACGACGCCTCCGGGCATTCCCGTG
GGGGAAGCAGCATCTCCTCCTCCTCTTCCTTCACCGAGCAGCAGCAACAG
CCAGCTTTCGGGGGAAATGCGATCCAGCAGAAGCAAGAGCGGCAGTCTTC
TGTAAAGCATGAAATGTCGATGGGGTACAGAATTGAGCGTGGAAACGAAG
CACAGGAGCAAGTCAAAGCCATAGCTGACAGCATCTTCTCCAGTCCCCGA
AAAAAATGTGGTGGGAATCTGAACGAGACGCAGGTCCCGATGCTTGCTGC
TGGAGAGGCACGAGTGGAGAGGGAGGAGGGCAGCTTGGGCTTTCAGCAGT
TGGCGAGGTTACCGGTGGTGGATGAGACGATGGAGGAGCAAGAGGAGGCC
TCTCCAGCGTTTGGTGCTGGTAAAGCACTGATTGACCTGTCTCCATCCTC
TTCCCCGCATGCTCAGCAACCGCAAGAGGCTCATAAAGAGGAGCAGCAAC
AGCAGGAGCAGCAAGCACAATTTTCTTGCTGGGACACGAATTCTCATCAC
AACACCTCCATCGAGTCTCGAACAAGCGGGAATAGTAAGGATGGAGGGAA
GGTGATCGGCGAAGACGACGATGACGATGAAAGCTTGATCGCTTTGGTGG
AGGCGGACTTCCAGGATGCATTGATCCAAAGCTACGAGACCTTTGCTCGT
GATTCCTTTACCACCAACTACCCAACAACGTTTGAAGCCCTCCCCACCGT
AATTGATACCTCCGGTGTTGGGGACGAGGATATAGCCATTGTTCCGCGAC
CCTCCTACCAGCAGACCCTCCCCTCTTCCACGGTCTGCAATCCTCCCCGA
CGCGGGACCACGGTGGGTGATTATAATGGCGTGACCGCGGTCCAACAGCA
TCGAGATCGGCGGGGGAGCAATGGCAATTCAGTGGGTACGCGTGACGGGC
TCATGGCTGCCGCTGCCAAGGCCTTACCCACAACTCTCACCTACGCACCT
TACGGCTTCTGCCTAATCTCTCGTTTCTCCTTTATCAACTCATTGCGTGC
GCCTCTGGCGGCTCTGTTCGACCCCAAGAACACCCGGCACCCCTCCGCTC
TGCGCGCCATCCAAGACTATCTTGCCGCCCAATCCCCCATTCACATCCCT
CTCAATGCCGCCGACCGGCACGAAAGCCTATGTCTATTGCAGACGGCACC
AGCACCCTCTGCTATTTCACCCCATGTGGCAGCAGCAGCAGCAGCGCTCT
CACCCTCAGGCCTTCTCTCTCCCTTTCTCGCCAAACCAGCACCAACCTCC
ACATCCGCCGCTATCAACTCCCATCCTGCAACCCTCCTTACCCCCTCCCC
TCCCCAGCACCAGCACCAATACCGCTTCTTTACCCAGATCGACTTTGAGC
TTGAAACGCTTTTCCAGTGCCTCAACCCCCGTAACCTCGTCCTTGTGTTT
CTCGCTCTGCTCCTCGAGTGCAAAGTACTTCTCATCTCCGAACGCCTCAC
CCTGTTAACCATCGCTGGTGAAGGGCTTCGCTTCCTCCTTCACCCGCTCA
AGTGGTGTCACGTCTACGTGCCACTCGTTCCTGAAGTCATGATCGACCAT
GTAATTGGCTGTCCAACTCCTTTTATCATGGGACTTCACCGCAAAACCTA
CCTCCAACGCCAAGATGACTTCCCTGCGGACATTGTGCAGGTTGATCTCG
ACAATGACTACGTTGAAGCACCGGCCAAGGACTTGAACCGGAAAAATGCT
CCATTTGCTGGCCCGCTTGCCCGAAATTTTGAGCGCTTAGCCTCTCCCGC
CACCGCGCTCAGCGATTCGTGCCATTGGGCACCATACACCCAGGGACCAG
CGCATGCGATGACTAACTTCCGTAGCAGCAACAACAGCAGCAGTAAGAAC
AGCGGCCTACCCTCTTCACCCGTCAGTGCCGCGGCCAACGGAGCCGCGCC
TGGGCCGTGGCTAGCGCTGCAAATGCGAGACATGCGCGCGGCTCTTTTGG
TGTTGCGGGACTTTGTGGAGGGATTGTTGATGGGTATTGAGGACTCGTGC
TATTGTATTTATACTGAAACGGAGATGACGATTTTGTTCGATGAGACATT
GTTTGGGCATATTTGTGGCCCTGCGGAGCTGCTATTGATCACGCCGAATG
AACCCGACACAGATGCCTTGCCTCATTCTCCCCACTTGCCCCCGGCACCG
CCCAACGACGCGACGGCTCAGGAGGATTTCGTGTTGCGCTTTTGCCGGAC
GCAAGCCTTTTCGAATGCACTGATGAAGGGGTTGCAGCGGGACGAATAGA
TTGGCAAAGACACATACGTGAAGACGATAAATGTAATGAAATTGAATTCG
AAAA

protein sequence of jgi.p|Nanoce1779_2|593199

>mRNA_5938-protein ID=mRNA_5938-protein|Name=jgi.p|Nanoce1779_2|593199|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MEGRTAGGQLKGGEGRMPLQSCPEIAAVESLESLPGPAESSRTTTSVTPF
PTIVADNADANASRSMTSTTHSSFSSDDASGHSRGGSSISSSSSFTEQQQ
QPAFGGNAIQQKQERQSSVKHEMSMGYRIERGNEAQEQVKAIADSIFSSP
RKKCGGNLNETQVPMLAAGEARVEREEGSLGFQQLARLPVVDETMEEQEE
ASPAFGAGKALIDLSPSSSPHAQQPQEAHKEEQQQQEQQAQFSCWDTNSH
HNTSIESRTSGNSKDGGKVIGEDDDDDESLIALVEADFQDALIQSYETFA
RDSFTTNYPTTFEALPTVIDTSGVGDEDIAIVPRPSYQQTLPSSTVCNPP
RRGTTVGDYNGVTAVQQHRDRRGSNGNSVGTRDGLMAAAAKALPTTLTYA
PYGFCLISRFSFINSLRAPLAALFDPKNTRHPSALRAIQDYLAAQSPIHI
PLNAADRHESLCLLQTAPAPSAISPHVAAAAAALSPSGLLSPFLAKPAPT
STSAAINSHPATLLTPSPPQHQHQYRFFTQIDFELETLFQCLNPRNLVLV
FLALLLECKVLLISERLTLLTIAGEGLRFLLHPLKWCHVYVPLVPEVMID
HVIGCPTPFIMGLHRKTYLQRQDDFPADIVQVDLDNDYVEAPAKDLNRKN
APFAGPLARNFERLASPATALSDSCHWAPYTQGPAHAMTNFRSSNNSSSK
NSGLPSSPVSAAANGAAPGPWLALQMRDMRAALLVLRDFVEGLLMGIEDS
CYCIYTETEMTILFDETLFGHICGPAELLLITPNEPDTDALPHSPHLPPA
PPNDATAQEDFVLRFCRTQAFSNALMKGLQRDE*

mRNA from alignment at scaffold_14:118307..120960-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5938 ID=mRNA_5938|Name=jgi.p|Nanoce1779_2|593199|organism=Nannochloropsis oceanica|type=mRNA|length=2654bp|location=Sequence derived from alignment at scaffold_14:118307..120960- (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGATATGTAGTCCATTGATCAATGTGGATTTGACATTAAGTCAGTCGATG
GAAGGGAGGACAGCAGGAGGACAGCTGAAAGGGGGGGAGGGGCGGATGCC
CTTACAGTCTTGTCCTGAGATAGCGGCAGTTGAATCGCTAGAGTCCCTTC
CTGGGCCTGCGGAATCGTCGCGGACCACTACTTCTGTCACACCCTTTCCT
ACCATTGTTGCTGATAATGCTGATGCCAATGCGAGCCGGTCAATGACAAG
TACCACCCACTCTTCTTTTTCCTCAGACGACGCCTCCGGGCATTCCCGTG
GGGGAAGCAGCATCTCCTCCTCCTCTTCCTTCACCGAGCAGCAGCAACAG
CCAGCTTTCGGGGGAAATGCGATCCAGCAGAAGCAAGAGCGGCAGTCTTC
TGTAAAGCATGAAATGTCGATGGGGTACAGAATTGAGCGTGGAAACGAAG
CACAGGAGCAAGTCAAAGCCATAGCTGACAGCATCTTCTCCAGTCCCCGA
AAAAAATGTGGTGGGAATCTGAACGAGACGCAGGTCCCGATGCTTGCTGC
TGGAGAGGCACGAGTGGAGAGGGAGGAGGGCAGCTTGGGCTTTCAGCAGT
TGGCGAGGTTACCGGTGGTGGATGAGACGATGGAGGAGCAAGAGGAGGCC
TCTCCAGCGTTTGGTGCTGGTAAAGCACTGATTGACCTGTCTCCATCCTC
TTCCCCGCATGCTCAGCAACCGCAAGAGGCTCATAAAGAGGAGCAGCAAC
AGCAGGAGCAGCAAGCACAATTTTCTTGCTGGGACACGAATTCTCATCAC
AACACCTCCATCGAGTCTCGAACAAGCGGGAATAGTAAGGATGGAGGGAA
GGTGATCGGCGAAGACGACGATGACGATGAAAGCTTGATCGCTTTGGTGG
AGGCGGACTTCCAGGATGCATTGATCCAAAGCTACGAGACCTTTGCTCGT
GATTCCTTTACCACCAACTACCCAACAACGTTTGAAGCCCTCCCCACCGT
AATTGATACCTCCGGTGTTGGGGACGAGGATATAGCCATTGTTCCGCGAC
CCTCCTACCAGCAGACCCTCCCCTCTTCCACGGTCTGCAATCCTCCCCGA
CGCGGGACCACGGTGGGTGATTATAATGGCGTGACCGCGGTCCAACAGCA
TCGAGATCGGCGGGGGAGCAATGGCAATTCAGTGGGTACGCGTGACGGGC
TCATGGCTGCCGCTGCCAAGGCCTTACCCACAACTCTCACCTACGCACCT
TACGGCTTCTGCCTAATCTCTCGTTTCTCCTTTATCAACTCATTGCGTGC
GCCTCTGGCGGCTCTGTTCGACCCCAAGAACACCCGGCACCCCTCCGCTC
TGCGCGCCATCCAAGACTATCTTGCCGCCCAATCCCCCATTCACATCCCT
CTCAATGCCGCCGACCGGCACGAAAGCCTATGTCTATTGCAGACGGCACC
AGCACCCTCTGCTATTTCACCCCATGTGGCAGCAGCAGCAGCAGCGCTCT
CACCCTCAGGCCTTCTCTCTCCCTTTCTCGCCAAACCAGCACCAACCTCC
ACATCCGCCGCTATCAACTCCCATCCTGCAACCCTCCTTACCCCCTCCCC
TCCCCAGCACCAGCACCAATACCGCTTCTTTACCCAGATCGACTTTGAGC
TTGAAACGCTTTTCCAGTGCCTCAACCCCCGTAACCTCGTCCTTGTGTTT
CTCGCTCTGCTCCTCGAGTGCAAAGTACTTCTCATCTCCGAACGCCTCAC
CCTGTTAACCATCGCTGGTGAAGGGCTTCGCTTCCTCCTTCACCCGCTCA
AGTGGTGTCACGTCTACGTGCCACTCGTTCCTGAAGTCATGATCGACCAT
GTAATTGGCTGTCCAACTCCTTTTATCATGGGACTTCACCGCAAAACCTA
CCTCCAACGCCAAGATGACTTCCCTGCGGACATTGTGCAGGTTGATCTCG
ACAATGACTACGTTGAAGCACCGGCCAAGGACTTGAACCGGAAAAATGCT
CCATTTGCTGGCCCGCTTGCCCGAAATTTTGAGCGCTTAGCCTCTCCCGC
CACCGCGCTCAGCGATTCGTGCCATTGGGCACCATACACCCAGGGACCAG
CGCATGCGATGACTAACTTCCGTAGCAGCAACAACAGCAGCAGTAAGAAC
AGCGGCCTACCCTCTTCACCCGTCAGTGCCGCGGCCAACGGAGCCGCGCC
TGGGCCGTGGCTAGCGCTGCAAATGCGAGACATGCGCGCGGCTCTTTTGG
TGTTGCGGGACTTTGTGGAGGGATTGTTGATGGGTATTGAGGACTCGTGC
TATTGTATTTATACTGAAACGGAGATGACGATTTTGTTCGATGAGACATT
GTTTGGGCATATTTGTGGCCCTGCGGAGCTGCTATTGATCACGCCGAATG
AACCCGACACAGATGCCTTGCCTCATTCTCCCCACTTGCCCCCGGCACCG
CCCAACGACGCGACGGCTCAGGAGGATTTCGTGTTGCGCTTTTGCCGGAC
GCAAGCCTTTTCGAATGCACTGATGAAGGGGTTGCAGCGGGACGAATAGA
TTGGCAAAGACACATACGTGAAGACGATAAATGTAATGAAATTGAATTCG
AAAA

Coding sequence (CDS) from alignment at scaffold_14:118307..120960-

>mRNA_5938 ID=mRNA_5938|Name=jgi.p|Nanoce1779_2|593199|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_14:118307..120960- (Nannochloropsis oceanica)
ATGGAAGGGAGGACAGCAGGAGGACAGCTGAAAGGGGGGGAGGGGCGGAT
GCCCTTACAGTCTTGTCCTGAGATAGCGGCAGTTGAATCGCTAGAGTCCC
TTCCTGGGCCTGCGGAATCGTCGCGGACCACTACTTCTGTCACACCCTTT
CCTACCATTGTTGCTGATAATGCTGATGCCAATGCGAGCCGGTCAATGAC
AAGTACCACCCACTCTTCTTTTTCCTCAGACGACGCCTCCGGGCATTCCC
GTGGGGGAAGCAGCATCTCCTCCTCCTCTTCCTTCACCGAGCAGCAGCAA
CAGCCAGCTTTCGGGGGAAATGCGATCCAGCAGAAGCAAGAGCGGCAGTC
TTCTGTAAAGCATGAAATGTCGATGGGGTACAGAATTGAGCGTGGAAACG
AAGCACAGGAGCAAGTCAAAGCCATAGCTGACAGCATCTTCTCCAGTCCC
CGAAAAAAATGTGGTGGGAATCTGAACGAGACGCAGGTCCCGATGCTTGC
TGCTGGAGAGGCACGAGTGGAGAGGGAGGAGGGCAGCTTGGGCTTTCAGC
AGTTGGCGAGGTTACCGGTGGTGGATGAGACGATGGAGGAGCAAGAGGAG
GCCTCTCCAGCGTTTGGTGCTGGTAAAGCACTGATTGACCTGTCTCCATC
CTCTTCCCCGCATGCTCAGCAACCGCAAGAGGCTCATAAAGAGGAGCAGC
AACAGCAGGAGCAGCAAGCACAATTTTCTTGCTGGGACACGAATTCTCAT
CACAACACCTCCATCGAGTCTCGAACAAGCGGGAATAGTAAGGATGGAGG
GAAGGTGATCGGCGAAGACGACGATGACGATGAAAGCTTGATCGCTTTGG
TGGAGGCGGACTTCCAGGATGCATTGATCCAAAGCTACGAGACCTTTGCT
CGTGATTCCTTTACCACCAACTACCCAACAACGTTTGAAGCCCTCCCCAC
CGTAATTGATACCTCCGGTGTTGGGGACGAGGATATAGCCATTGTTCCGC
GACCCTCCTACCAGCAGACCCTCCCCTCTTCCACGGTCTGCAATCCTCCC
CGACGCGGGACCACGGTGGGTGATTATAATGGCGTGACCGCGGTCCAACA
GCATCGAGATCGGCGGGGGAGCAATGGCAATTCAGTGGGTACGCGTGACG
GGCTCATGGCTGCCGCTGCCAAGGCCTTACCCACAACTCTCACCTACGCA
CCTTACGGCTTCTGCCTAATCTCTCGTTTCTCCTTTATCAACTCATTGCG
TGCGCCTCTGGCGGCTCTGTTCGACCCCAAGAACACCCGGCACCCCTCCG
CTCTGCGCGCCATCCAAGACTATCTTGCCGCCCAATCCCCCATTCACATC
CCTCTCAATGCCGCCGACCGGCACGAAAGCCTATGTCTATTGCAGACGGC
ACCAGCACCCTCTGCTATTTCACCCCATGTGGCAGCAGCAGCAGCAGCGC
TCTCACCCTCAGGCCTTCTCTCTCCCTTTCTCGCCAAACCAGCACCAACC
TCCACATCCGCCGCTATCAACTCCCATCCTGCAACCCTCCTTACCCCCTC
CCCTCCCCAGCACCAGCACCAATACCGCTTCTTTACCCAGATCGACTTTG
AGCTTGAAACGCTTTTCCAGTGCCTCAACCCCCGTAACCTCGTCCTTGTG
TTTCTCGCTCTGCTCCTCGAGTGCAAAGTACTTCTCATCTCCGAACGCCT
CACCCTGTTAACCATCGCTGGTGAAGGGCTTCGCTTCCTCCTTCACCCGC
TCAAGTGGTGTCACGTCTACGTGCCACTCGTTCCTGAAGTCATGATCGAC
CATGTAATTGGCTGTCCAACTCCTTTTATCATGGGACTTCACCGCAAAAC
CTACCTCCAACGCCAAGATGACTTCCCTGCGGACATTGTGCAGGTTGATC
TCGACAATGACTACGTTGAAGCACCGGCCAAGGACTTGAACCGGAAAAAT
GCTCCATTTGCTGGCCCGCTTGCCCGAAATTTTGAGCGCTTAGCCTCTCC
CGCCACCGCGCTCAGCGATTCGTGCCATTGGGCACCATACACCCAGGGAC
CAGCGCATGCGATGACTAACTTCCGTAGCAGCAACAACAGCAGCAGTAAG
AACAGCGGCCTACCCTCTTCACCCGTCAGTGCCGCGGCCAACGGAGCCGC
GCCTGGGCCGTGGCTAGCGCTGCAAATGCGAGACATGCGCGCGGCTCTTT
TGGTGTTGCGGGACTTTGTGGAGGGATTGTTGATGGGTATTGAGGACTCG
TGCTATTGTATTTATACTGAAACGGAGATGACGATTTTGTTCGATGAGAC
ATTGTTTGGGCATATTTGTGGCCCTGCGGAGCTGCTATTGATCACGCCGA
ATGAACCCGACACAGATGCCTTGCCTCATTCTCCCCACTTGCCCCCGGCA
CCGCCCAACGACGCGACGGCTCAGGAGGATTTCGTGTTGCGCTTTTGCCG
GACGCAAGCCTTTTCGAATGCACTGATGAAGGGGTTGCAGCGGGACGAAT
AG

Synonyms

Publications