jgi.p|Nanoce1779_2|593192, mRNA_5934 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593192
Unique Name	mRNA_5934
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1189
Alignment location	scaffold_14:107466..108654 +

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Properties


Property Name	Value
TranscriptId	593278
Track	FilteredModels2
ProteinId	593192

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:107466..108654 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593192	gene_5934	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593192	mRNA_5934-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5934	CDS_5934	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:107466..108654+
coding sequence from alignment at scaffold_14:107466..108654+

mRNA sequence

>mRNA_5934 ID=mRNA_5934|Name=jgi.p|Nanoce1779_2|593192|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp
CCCCCTCCTCGCCTGCAAAAGACACCCAAAACGAAACCATGTCCGCCTCG
TTCTTTTCCACCGTCACCAACATCAGCATCTTAAGGATTGCCGCCGTCCT
CGCCTCCTGTCCGTCCTTCCCGTCCTCCCTCCCGCCCTCCTTCCCTGCCA
AGACTCGCAGGCTCTTCAGAAGCCAGTAGCGCACGTCGCAATAGGGAAGA
ATATAATCCACTCGCAGAACTTCCATCAATTCTGCCTGTGCATGTGCCTG
CGCTTGCCTCTCCTTCTTCGATTTATTCGCTGAACCCTTGCTGCTGCAGC
AGACCAGGCGGGCAATCAAGCGGTAGAAGAGGTCGTTGCCGAAGCAGCGG
AAAGGCTTCCGACGGACTACACTTTCCACTTTGACCAACTCCATGATGGT
GCGCAGGGCGGCGGCTTGGGTGCGAAGAAAAGAGGAAGAGGGGGAAAAGG
ATTGACAGGGGGAGACAGGCGAGGAGGGGTCAATAAGGTCGAGGAGGAGG
GAGAGGAAGGATTGATACTGTCCGTAAATCCACCGGTTGAATTCGTCCAA
GGCATCCTTCTGTACGCCGTCTCTACCGTCGCTGTTGCTGATGTCGGTAT
CCCGGGCACGCTTTCGGCCTCTACTGCTACTGCTGCTGCTGCTGCTGGTA
TTTGCCTCATTGTCTTTCGTCTTATCCTTTTTGCCGTCGGACGCTATGGT
AGTAGTAAGGGGCTTACATACATCCCCGCGCTTGACCAATGCAAGAAAAA
TACGACGCAACGCATGCATCGATTGGATGGCTGCCTCCTTTCCCTCCTTG
GCCTCCTTCATCCCCTTGGCCTCGGATTTCTTCCCCTCCTCATCTTCTTC
GTCTGCCACCGAAGCATGCTCTGCGGGAAATAGCCTGCGAACATGCCCCA
GAAGCTCGATTAGTCCATTCATGTGATGCAAATCCTGGCCGTCCACCACG
CCTCGCTCCACCTCCCGTATACGCCCGAAGATACTTGTGCTGCTGCTCTT
AGCACTGGTAGTGATGCCGCTGGTGCTGGAGGCCGAGCCCCTGATTGTCT
TGACTCGCTTGCCCTTCATGGTAGTGGCAAGTTCCTGCTTCGAATATCTG
TATGGGTAATACACCGTGGAAAATGAGCAATTGCAAAGAGCTTTCGTCTG
GTGGCCGTGTGAGCACGTAAAGGATATTAGCAACGGGCG

protein sequence of jgi.p|Nanoce1779_2|593192

>mRNA_5934-protein ID=mRNA_5934-protein|Name=jgi.p|Nanoce1779_2|593192|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSVSRARFRPLLLLLLLLLVFASLSFVLSFLPSDAMVVVRGLHTSPRLTN
ARKIRRNACIDWMAASFPSLASFIPLASDFFPSSSSSSATEACSAGNSLR
TCPRSSISPFM*

mRNA from alignment at scaffold_14:107466..108654+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5934 ID=mRNA_5934|Name=jgi.p|Nanoce1779_2|593192|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at scaffold_14:107466..108654+ (Nannochloropsis oceanica)
CCCCCTCCTCGCCTGCAAAAGACACCCAAAACGAAACCATGTCCGCCTCG
TTCTTTTCCACCGTCACCAACATCAGCATCTTAAGGATTGCCGCCGTCCT
CGCCTCCTGTCCGTCCTTCCCGTCCTCCCTCCCGCCCTCCTTCCCTGCCA
AGACTCGCAGGCTCTTCAGAAGCCAGTAGCGCACGTCGCAATAGGGAAGA
ATATAATCCACTCGCAGAACTTCCATCAATTCTGCCTGTGCATGTGCCTG
CGCTTGCCTCTCCTTCTTCGATTTATTCGCTGAACCCTTGCTGCTGCAGC
AGACCAGGCGGGCAATCAAGCGGTAGAAGAGGTCGTTGCCGAAGCAGCGG
AAAGGCTTCCGACGGACTACACTTTCCACTTTGACCAACTCCATGATGGT
GCGCAGGGCGGCGGCTTGGGTGCGAAGAAAAGAGGAAGAGGGGGAAAAGG
ATTGACAGGGGGAGACAGGCGAGGAGGGGTCAATAAGGTCGAGGAGGAGG
GAGAGGAAGGATTGATACTGTCCGTAAATCCACCGGTTGAATTCGTCCAA
GGCATCCTTCTGTACGCCGTCTCTACCGTCGCTGTTGCTGATGTCGGTAT
CCCGGGCACGCTTTCGGCCTCTACTGCTACTGCTGCTGCTGCTGCTGGTA
TTTGCCTCATTGTCTTTCGTCTTATCCTTTTTGCCGTCGGACGCTATGGT
AGTAGTAAGGGGCTTACATACATCCCCGCGCTTGACCAATGCAAGAAAAA
TACGACGCAACGCATGCATCGATTGGATGGCTGCCTCCTTTCCCTCCTTG
GCCTCCTTCATCCCCTTGGCCTCGGATTTCTTCCCCTCCTCATCTTCTTC
GTCTGCCACCGAAGCATGCTCTGCGGGAAATAGCCTGCGAACATGCCCCA
GAAGCTCGATTAGTCCATTCATGTGATGCAAATCCTGGCCGTCCACCACG
CCTCGCTCCACCTCCCGTATACGCCCGAAGATACTTGTGCTGCTGCTCTT
AGCACTGGTAGTGATGCCGCTGGTGCTGGAGGCCGAGCCCCTGATTGTCT
TGACTCGCTTGCCCTTCATGGTAGTGGCAAGTTCCTGCTTCGAATATCTG
TATGGGTAATACACCGTGGAAAATGAGCAATTGCAAAGAGCTTTCGTCTG
GTGGCCGTGTGAGCACGTAAAGGATATTAGCAACGGGCG

Coding sequence (CDS) from alignment at scaffold_14:107466..108654+

>mRNA_5934 ID=mRNA_5934|Name=jgi.p|Nanoce1779_2|593192|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_14:107466..108654+ (Nannochloropsis oceanica)
ATGTCGGTATCCCGGGCACGCTTTCGGCCTCTACTGCTACTGCTGCTGCT
GCTGCTGGTATTTGCCTCATTGTCTTTCGTCTTATCCTTTTTGCCGTCGG
ACGCTATGGTAGTAGTAAGGGGCTTACATACATCCCCGCGCTTGACCAAT
GCAAGAAAAATACGACGCAACGCATGCATCGATTGGATGGCTGCCTCCTT
TCCCTCCTTGGCCTCCTTCATCCCCTTGGCCTCGGATTTCTTCCCCTCCT
CATCTTCTTCGTCTGCCACCGAAGCATGCTCTGCGGGAAATAGCCTGCGA
ACATGCCCCAGAAGCTCGATTAGTCCATTCATGTGA

Synonyms

Publications