jgi.p|Nanoce1779_2|556724, mRNA_5933 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556724
Unique NamemRNA_5933
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1206
Alignment locationscaffold_14:105988..107367 -

Link to JBrowse

Properties
Property NameValue
TranscriptId556810
TrackFilteredModels2
ProteinId556724
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:105988..107367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556724gene_5933Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556724mRNA_5933-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5933CDS_5933Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5933 ID=mRNA_5933|Name=jgi.p|Nanoce1779_2|556724|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ATGGGTGAAGGATTTGGTGATGACGATTGGGATGAGGGCAAGGACGAGGA
AGAGAAGGAGGGAGCAGCGGTGGCGACGGAGAGGGTCCCTCATGTTGCCC
GTCTGTCCGAGCACCGCAAGGTCTTAGAGGAAGCCTGGGTGGCCTCCCTC
CGCCTGCCCTCCTTCACTCCCTCCCTCTACCGCTCCACCATCCAATTCGT
CGCGCGGCACGTGCTGGAGAAGATGCCTCATCCCTTGCAGCTGGCTGACT
TTTTTACGGCCTCCTATGCACAGGGGGGCTTGACGGCGCTGTTGGCGTTG
GAGGGATTGTTCGTTTTGATGCAGGCACATAACCTCGAATATCCTCGCTT
TTACTCCTCTCTCTATCGGTTGCTCGCACCGGGTCCTCAGCTCCTCTACT
CCAGGCACCGTTCGCGGTTTTTCAAGCTTCTTCGTCTTTGCTTGGTGTCA
CCCGCCGTCCCGGCCCATATTGTCGCTGCCTTTCTCAAGCGCCTTTGTCG
GCTCGCCCTCCTCGCCCCCCCGCCTTCCATCATCTTCCTCCTCTCCCTTG
TCGTCCTTGTCCTGCGAGCACACCCGGCGTGCTCAGCCTTGATACAGCGT
GCGTTAACTCTTGACAAGGCCAGGTCCGTATCCACGATTCAAACCTCCTT
ATGGGAAGTTGCGGCCTTACAATGGCACTATCATCCGAGTGTGGCCATGC
TAGCCAAGGGGCTCGAGGTCTCTACCCCGGAAGATCCAAAGACACTTAAC
CACCTTGTGACCGACATGGACGAGTTGGCCTCCTACACATATGCCGACTT
GTTCTTGCAAGAGGGAAAACAACGGCGGAAGGTCAGGAAGGATCAGATGG
GGGAAGGAGGAAAGAGGGGCGGGGGAAGGAGGGGGGAAGGAAAGGAGGAG
AGGGGGGAGGGAGGGGTGGCCTTGGCGTTTGAGAAGATGGCGAGGCCGGA
TAAGCTGTTCCAGCCGGGAGATGTGTTTGATGGGTTGTTTGCTCTTCCCG
CAGTGGCGGTATTGGAGTGAGGTGGTGAGGGGCTGATGGTGGAGAGGATG
GACATTGGGGAGGGGAAGAGAGAGGACAAAACCCATAAAAAACGACCAGG
GAGACGAGCTATTAGGATGGAACATCATTCAGACGGAAGAAAAAGGGAGC
AACTACGTATACTATTAGTCTCAAAACGACTCGAGGCTCGAGTATATGTA
GCGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|556724

>mRNA_5933-protein ID=mRNA_5933-protein|Name=jgi.p|Nanoce1779_2|556724|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MGEGFGDDDWDEGKDEEEKEGAAVATERVPHVARLSEHRKVLEEAWVASL
RLPSFTPSLYRSTIQFVARHVLEKMPHPLQLADFFTASYAQGGLTALLAL
EGLFVLMQAHNLEYPRFYSSLYRLLAPGPQLLYSRHRSRFFKLLRLCLVS
PAVPAHIVAAFLKRLCRLALLAPPPSIIFLLSLVVLVLRAHPACSALIQR
ALTLDKARSVSTIQTSLWEVAALQWHYHPSVAMLAKGLEVSTPEDPKTLN
HLVTDMDELASYTYADLFLQEGKQRRKVRKDQMGEGGKRGGGRRGEGKEE
RGEGGVALAFEKMARPDKLFQPGDVFDGLFALPAVAVLE*
back to top

mRNA from alignment at scaffold_14:105988..107367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5933 ID=mRNA_5933|Name=jgi.p|Nanoce1779_2|556724|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at scaffold_14:105988..107367- (Nannochloropsis oceanica)
ATGGGTGAAGGATTTGGTGATGACGATTGGGATGAGGGCAAGGACGAGGA
AGAGAAGGAGGGAGCAGCGGTGGCGACGGAGAGGGTCCCTCATGTTGCCC
GTCTGTCCGAGCACCGCAAGGTCTTAGAGGAAGCCTGGGTGGCCTCCCTC
CGCCTGCCCTCCTTCACTCCCTCCCTCTACCGCTCCACCATCCAATTCGT
CGCGCGGCACGTGCTGGAGAAGATGCCTCATCCCTTGCAGCTGGCTGACT
TTTTTACGGCCTCCTATGCACAGGGGGGCTTGACGGCGCTGTTGGCGTTG
GAGGGATTGTTCGTTTTGATGCAGGCACATAACCTCGAATATCCTCGCTT
TTACTCCTCTCTCTATCGGTTGCTCGCACCGGGTCCTCAGCTCCTCTACT
CCAGGCACCGTTCGCGGTTTTTCAAGCTTCTTCGTCTTTGCTTGGTGTCA
CCCGCCGTCCCGGCCCATATTGTCGCTGCCTTTCTCAAGCGCCTTTGTCG
GCTCGCCCTCCTCGCCCCCCCGCCTTCCATCATCTTCCTCCTCTCCCTTG
TCGTCCTTGTCCTGCGAGCACACCCGGCGTGCTCAGCCTTGATACAGCGT
GCGTTAACTCTTGACAAGGCCAGTGCCATGCATTTAGATACTTTCGACCC
CAACGCCCAAGATCCCGCCAACGCTTTCCACCAGCAGCGGGAGCAACAGG
GACATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGACGAAGAACAAGAAACTTCAAAATGAAGAAGTAGGGTC
CGTATCCACGATTCAAACCTCCTTATGGGAAGTTGCGGCCTTACAATGGC
ACTATCATCCGAGTGTGGCCATGCTAGCCAAGGGGCTCGAGGTCTCTACC
CCGGAAGATCCAAAGACACTTAACCACCTTGTGACCGACATGGACGAGTT
GGCCTCCTACACATATGCCGACTTGTTCTTGCAAGAGGGAAAACAACGGC
GGAAGGTCAGGAAGGATCAGATGGGGGAAGGAGGAAAGAGGGGCGGGGGA
AGGAGGGGGGAAGGAAAGGAGGAGAGGGGGGAGGGAGGGGTGGCCTTGGC
GTTTGAGAAGATGGCGAGGCCGGATAAGCTGTTCCAGCCGGGAGATGTGT
TTGATGGGTTGTTTGCTCTTCCCGCAGTGGCGGTATTGGAGTGAGGTGGT
GAGGGGCTGATGGTGGAGAGGATGGACATTGGGGAGGGGAAGAGAGAGGA
CAAAACCCATAAAAAACGACCAGGGAGACGAGCTATTAGGATGGAACATC
ATTCAGACGGAAGAAAAAGGGAGCAACTACGTATACTATTAGTCTCAAAA
CGACTCGAGGCTCGAGTATATGTAGCGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_14:105988..107367-

>mRNA_5933 ID=mRNA_5933|Name=jgi.p|Nanoce1779_2|556724|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_14:105988..107367- (Nannochloropsis oceanica)
GGTCCGTATCCACGATTCAAACCTCCTTATGGGAAGTTGCGGCCTTACAA
TGGCACTATCATCCGAGTGTGGCCATGCTAGCCAAGGGGCTCGAGGTCTC
TACCCCGGAAGATCCAAAGACACTTAACCACCTTGTGACCGACATGGACG
AGTTGGCCTCCTACACATATGCCGACTTGTTCTTGCAAGAGGGAAAACAA
CGGCGGAAGGTCAGGAAGGATCAGATGGGGGAAGGAGGAAAGAGGGGCGG
GGGAAGGAGGGGGGAAGGAAAGGAGGAGAGGGGGGAGGGAGGGGTGGCCT
TGGCGTTTGAGAAGATGGCGAGGCCGGATAAGCTGTTCCAGCCGGGAGAT
GTGTTTGATGGGTTGTTTGCTCTTCCCGCAGTGGCGGTATTGGAGTGAAT
GGGTGAAGGATTTGGTGATGACGATTGGGATGAGGGCAAGGACGAGGAAG
AGAAGGAGGGAGCAGCGGTGGCGACGGAGAGGGTCCCTCATGTTGCCCGT
CTGTCCGAGCACCGCAAGGTCTTAGAGGAAGCCTGGGTGGCCTCCCTCCG
CCTGCCCTCCTTCACTCCCTCCCTCTACCGCTCCACCATCCAATTCGTCG
CGCGGCACGTGCTGGAGAAGATGCCTCATCCCTTGCAGCTGGCTGACTTT
TTTACGGCCTCCTATGCACAGGGGGGCTTGACGGCGCTGTTGGCGTTGGA
GGGATTGTTCGTTTTGATGCAGGCACATAACCTCGAATATCCTCGCTTTT
ACTCCTCTCTCTATCGGTTGCTCGCACCGGGTCCTCAGCTCCTCTACTCC
AGGCACCGTTCGCGGTTTTTCAAGCTTCTTCGTCTTTGCTTGGTGTCACC
CGCCGTCCCGGCCCATATTGTCGCTGCCTTTCTCAAGCGCCTTTGTCGGC
TCGCCCTCCTCGCCCCCCCGCCTTCCATCATCTTCCTCCTCTCCCTTGTC
GTCCTTGTCCTGCGAGCACACCCGGCGTGCTCAGCCTTGATACAGCGTGC
GTTAACTCTTGACAAGGCCAGGTCCGTATCCACGATTCAAACCTCCTTAT
GGGAAGTTGCGGCCTTACAATGGCACTATCATCCGAGTGTGGCCATGCTA
GCCAAGGGGCTCGAGGTCTCTACCCCGGAAGATCCAAAGACACTTAACCA
CCTTGTGACCGACATGGACGAGTTGGCCTCCTACACATATGCCGACTTGT
TCTTGCAAGAGGGAAAACAACGGCGGAAGGTCAGGAAGGATCAGATGGGG
GAAGGAGGAAAGAGGGGCGGGGGAAGGAGGGGGGAAGGAAAGGAGGAGAG
GGGGGAGGGAGGGGTGGCCTTGGCGTTTGAGAAGATGGCGAGGCCGGATA
AGCTGTTCCAGCCGGGAGATGTGTTTGATGGGTTGTTTGCTCTTCCCGCA
GTGGCGGTATTGGAGTGAATGGGTGAAGGATTTGGTGATGACGATTGGGA
TGAGGGCAAGGACGAGGAAGAGAAGGAGGGAGCAGCGGTGGCGACGGAGA
GGGTCCCTCATGTTGCCCGTCTGTCCGAGCACCGCAAGGTCTTAGAGGAA
GCCTGGGTGGCCTCCCTCCGCCTGCCCTCCTTCACTCCCTCCCTCTACCG
CTCCACCATCCAATTCGTCGCGCGGCACGTGCTGGAGAAGATGCCTCATC
CCTTGCAGCTGGCTGACTTTTTTACGGCCTCCTATGCACAGGGGGGCTTG
ACGGCGCTGTTGGCGTTGGAGGGATTGTTCGTTTTGATGCAGGCACATAA
CCTCGAATATCCTCGCTTTTACTCCTCTCTCTATCGGTTGCTCGCACCGG
GTCCTCAGCTCCTCTACTCCAGGCACCGTTCGCGGTTTTTCAAGCTTCTT
CGTCTTTGCTTGGTGTCACCCGCCGTCCCGGCCCATATTGTCGCTGCCTT
TCTCAAGCGCCTTTGTCGGCTCGCCCTCCTCGCCCCCCCGCCTTCCATCA
TCTTCCTCCTCTCCCTTGTCGTCCTTGTCCTGCGAGCACACCCGGCGTGC
TCAGCCTTGATACAGCGTGCGTTAACTCTTGACAAGGCCA
back to top
Synonyms
Publications