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Properties
| Property Name | Value |
|---|
| TranscriptId | 593272 |
| Track | FilteredModels2 |
| ProteinId | 593186 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:102645..105092 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5932 ID=mRNA_5932|Name=jgi.p|Nanoce1779_2|593186|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp
ACAGGCTTTGTCCTCTACTTCCTTCCACTGACACAGATTACAACCTATAT
TAACCAACCATGCGTGTCTTCCGCCTGGTCCTCACCGTGGCCCTGGCCGC
CGCTGTCTTTGCCAATGAGGCCGTCACCACCGAGACCGACACCGAACTTG
CCACCGTGCAGGGCTCTGTAGACGGAGCGGTTGAGGTTACGCCAGATGCT
CCCGTCACCGAGACTGACGCCGAACTTGCCACCGTGCAGGACAATGTAGA
TGAGACGATTGAGGTTACGCCGGAAGCCCCCGTCTCCGAGACCAACGCCG
AGCTTGCGGTCGTGCAGGGCACAGAAGATGAGGCGATTGAGATTACACCG
GAAGAAGCTCAAACTGCTGAGGCCGACGCTGAACTTGCTGCCGTGCAGGG
CACTGTAGATGAGGCGGTTGACGTCACGCCTGAAGCTGCCAACGCCACCG
ATGCCGACATGGATGAAATCAAGAGCAAGGCCGCGGATGCCCTGAAGCGG
GCGGCCGACTCCGAGATCGCTAAGGACAACAATATGTCAGGCGCCCTCGA
CGGTGCCGCCAATAAGATCGGTACAGCCGGGACCAACACCGGCAGCACCA
GCAGCGCCAGCAGCGCCGCCAGCTCTGCCAAAACCTTACCCCAGATACTC
CAGAACTCGAACAACCCGAACGTGGCGAGCATTGGTAATTTGGCGCAGAA
CTCCGGCTTGATGCCCACCAACAGCATCAATTCGGTCAAGAACGCCAATC
CCGAGCTGGCCACGATGCTAAGTGCCCTGACCGCCGGTGCGGGCATTAGC
CAGTCCATGACTCAGTGCTACGGCTCTATCGAAGGGGATGAGGATGCCAT
CCAGTCGTCGCTTGTCTCTTTAGGAACCAGCATGGTCAACTCTGACTCGA
TCACGGCCGCCGCTGGAGTGGGTAAGGCGCTGATTACTGCCGCACCCGGC
GCTACTGCGAGCGAGAAGGACGCCATGTACAATCTGTTCCGCATTTACCT
CGACCAGAACGCCAACGCTGGCAAGGCGCTAACCACCACCCAACAGAAGG
CTTACAGCTCTTTGACCCCTGAGTGTAATGCTGCCTTTGATGAAATCGTC
ACCACGTACCAGAACAGCAAGGGCACCGTCAGCTCCCTCATGGCGGGGGG
TAAGAGCAACGTGACCTGCTCCAACTTCCAGGACAACACCACCTTTGTCG
ACATGACTCTCTGTGTCTGGCCCTCCGCCGTCTGGTCGCACAAGGAGAAG
GGCATCATGGCCAATATCACTGCCACCTTCACCAATTACGGGGTGGGCCT
CTGCGACGTTTCGTTCTACATCATCAACCTCGCGGAAAACATCGGTCTTA
AGCCCACCTGGCTGCCCGATTCCAAGAAGGCTTTCCCCGACGGCATTCCC
CAGGGGACCGAGATCGAGATCCAGGCCGTCGTCCCCTGGACGAATGAAAT
CGCCGAGAACAAGCCTGTGGTAGATATCCTTAAGGGATGGTCTGCCTGCC
CCAACGGTCGCGCCACCCCTGCTCCTACCGCGGCTCGCACTGCAGAGCCC
AAGATTGACACCGAAGTAATCAACTCGGCCGCGGCGTGCTTTATCACGGA
CGCCTGCAAGACCGCCGTGACCCCCTTTAAAGACGACCAGTGCGGGGCCT
ACACCCAACTGCTGACCTCCGGCTGCTCCACGTGCTCTGATGAGGTGCTT
ATGTCTGCGACAAAGTCCTGCTTGGCGTCCTGCCAGGCTAATGCTTGCGG
GGCCATGGCTCAGGTCACGAGCGGGGCCGGCGCGCTTTCCAAGGCTGTGG
CCTTCGTGGTCACCCTCGTTACTGCCTTTGCCTTTGTCCTTTAAGTGACG
AGAAGCAATCGCTTTTTAGGGGAAGGAGGAGGAGAAGGATAGAAGGAGAG
AGTTATTGTATCATATGCGTGTAAGTGTGTGATGTTTGTAGTGGCTTTGT
GTGAGACATCGGATAATGGAAGGAGAAAAGAGGATGGGCGCGCATGATTG
TCGGTTAGATCGCTGCCATTCTTAATTTAAAACTTCTCTTCTTCCTCTTC
TTCTTCTTTTAGGTGCAAGGGGGGGAATCAGGTTTATACATGTCGTACAT
ATTTATTGAACGAGGATGTAGAATGAACGAGGGGGAGAGAGAGGTTTTGT
TTTTGTTTGGGGGGGGGGGAGGGCGAAGAGAGAAAGAAAGCAAAAAGACA
GGGACGTGGACACATAAGAAAAAGAGCGAGAATCAGAAATTGGTTCCAAA
GAACAAGAATAATTATAATCGGAATGGGGAGGAGGAAGAGAAAGAAAGAG
AGAGAGAGAGAGAGAGAGAG back to topprotein sequence of jgi.p|Nanoce1779_2|593186 >mRNA_5932-protein ID=mRNA_5932-protein|Name=jgi.p|Nanoce1779_2|593186|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MRVFRLVLTVALAAAVFANEAVTTETDTELATVQGSVDGAVEVTPDAPVT
ETDAELATVQDNVDETIEVTPEAPVSETNAELAVVQGTEDEAIEITPEEA
QTAEADAELAAVQGTVDEAVDVTPEAANATDADMDEIKSKAADALKRAAD
SEIAKDNNMSGALDGAANKIGTAGTNTGSTSSASSAASSAKTLPQILQNS
NNPNVASIGNLAQNSGLMPTNSINSVKNANPELATMLSALTAGAGISQSM
TQCYGSIEGDEDAIQSSLVSLGTSMVNSDSITAAAGVGKALITAAPGATA
SEKDAMYNLFRIYLDQNANAGKALTTTQQKAYSSLTPECNAAFDEIVTTY
QNSKGTVSSLMAGGKSNVTCSNFQDNTTFVDMTLCVWPSAVWSHKEKGIM
ANITATFTNYGVGLCDVSFYIINLAENIGLKPTWLPDSKKAFPDGIPQGT
EIEIQAVVPWTNEIAENKPVVDILKGWSACPNGRATPAPTAARTAEPKID
TEVINSAAACFITDACKTAVTPFKDDQCGAYTQLLTSGCSTCSDEVLMSA
TKSCLASCQANACGAMAQVTSGAGALSKAVAFVVTLVTAFAFVL* back to topmRNA from alignment at scaffold_14:102645..105092- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5932 ID=mRNA_5932|Name=jgi.p|Nanoce1779_2|593186|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at scaffold_14:102645..105092- (Nannochloropsis oceanica)
ACAGGCTTTGTCCTCTACTTCCTTCCACTGACACAGATTACAACCTATAT
TAACCAACCATGCGTGTCTTCCGCCTGGTCCTCACCGTGGCCCTGGCCGC
CGCTGTCTTTGCCAATGAGGCCGTCACCACCGAGACCGACACCGAACTTG
CCACCGTGCAGGGCTCTGTAGACGGAGCGGTTGAGGTTACGCCAGATGCT
CCCGTCACCGAGACTGACGCCGAACTTGCCACCGTGCAGGACAATGTAGA
TGAGACGATTGAGGTTACGCCGGAAGCCCCCGTCTCCGAGACCAACGCCG
AGCTTGCGGTCGTGCAGGGCACAGAAGATGAGGCGATTGAGATTACACCG
GAAGAAGCTCAAACTGCTGAGGCCGACGCTGAACTTGCTGCCGTGCAGGG
CACTGTAGATGAGGCGGTTGACGTCACGCCTGAAGCTGCCAACGCCACCG
ATGCCGACATGGATGAAATCAAGAGCAAGGCCGCGGATGCCCTGAAGCGG
GCGGCCGACTCCGAGATCGCTAAGGACAACAATGTAAGCATTCTGTGAGA
AAGGCAGATGCAGAGCGACAAAGGGAAAAGAGGAGTACGATTACAAGTCT
CTGTATGCCCGCGAGTTTTCACCCACCTGCCCTTTTCTCACACCACCCAC
CCATTCTATAGATGTCAGGCGCCCTCGACGGTGCCGCCAATAAGATCGGT
ACAGCCGGGACCAACACCGGCAGCACCAGCAGCGCCAGCAGCGCCGCCAG
CTCTGCCAAAACCTTACCCCAGATACTCCAGAACTCGAACAACCCGAACG
TGGCGAGCATTGGTAATTTGGCGCAGAACTCCGGCTTGATGCCCACCAAC
AGCATCAATTCGGTCAAGAACGCCAATCCCGAGCTGGCCACGATGCTAAG
TGCCCTGACCGCCGGTGCGGGCATTAGCCAGTCCATGACTCAGTGCTACG
GCTCTATCGAAGGGGATGAGGATGCCATCCAGTCGTCGCTTGTCTCTTTA
GGAACCAGCATGGTCAACTCTGACTCGATCACGGCCGCCGCTGGAGTGGG
TAAGGCGCTGATTACTGCCGCACCCGGCGCTACTGCGAGCGAGAAGGACG
CCATGTACAATCTGTTCCGCATTTACCTCGACCAGAACGCCAACGCTGGC
AAGGCGCTAACCACCACCCAACAGAAGGCTTACAGCTCTTTGACCCCTGA
GTGTAATGCTGCCTTTGATGAAATCGTCACCACGTACCAGAACAGCAAGG
GCACCGTCAGCTCCCTCATGGCGGGGGGTAAGAGCAACGTGACCTGCTCC
AACTTCCAGGACAACACCACCTTTGTCGACATGACTCTCTGTGTCTGGCC
CTCCGCCGTCTGGTCGCACAAGGAGAAGGGCATCATGGCCAATATCACTG
CCACCTTCACCAATTACGGGGTGGGCCTCTGCGACGTTTCGTTCTACATC
ATCAACCTCGCGGAAAACATCGGTCTTAAGCCCACCTGGCTGCCCGATTC
CAAGAAGGCTTTCCCCGACGGCATTCCCCAGGGGACCGAGATCGAGATCC
AGGCCGTCGTCCCCTGGACGAATGAAATCGCCGAGAACAAGCCTGTGGTA
GATATCCTTAAGGGATGGTCTGCCTGCCCCAACGGTCGCGCCACCCCTGC
TCCTACCGCGGCTCGCACTGCAGAGCCCAAGATTGACACCGAAGTAATCA
ACTCGGCCGCGGCGTGCTTTATCACGGACGCCTGCAAGACCGCCGTGACC
CCCTTTAAAGACGACCAGTGCGGGGCCTACACCCAACTGCTGACCTCCGG
CTGCTCCACGTGCTCTGATGAGGTGCTTATGTCTGCGACAAAGTCCTGCT
TGGCGTCCTGCCAGGCTAATGCTTGCGGGGCCATGGCTCAGGTCACGAGC
GGGGCCGGCGCGCTTTCCAAGGCTGTGGCCTTCGTGGTCACCCTCGTTAC
TGCCTTTGCCTTTGTCCTTTAAGTGACGAGAAGCAATCGCTTTTTAGGGG
AAGGAGGAGGAGAAGGATAGAAGGAGAGAGTTATTGTATCATATGCGTGT
AAGTGTGTGATGTTTGTAGTGGCTTTGTGTGAGACATCGGATAATGGAAG
GAGAAAAGAGGATGGGCGCGCATGATTGTCGGTTAGATCGCTGCCATTCT
TAATTTAAAACTTCTCTTCTTCCTCTTCTTCTTCTTTTAGGTGCAAGGGG
GGGAATCAGGTTTATACATGTCGTACATATTTATTGAACGAGGATGTAGA
ATGAACGAGGGGGAGAGAGAGGTTTTGTTTTTGTTTGGGGGGGGGGGAGG
GCGAAGAGAGAAAGAAAGCAAAAAGACAGGGACGTGGACACATAAGAAAA
AGAGCGAGAATCAGAAATTGGTTCCAAAGAACAAGAATAATTATAATCGG
AATGGGGAGGAGGAAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAG back to topCoding sequence (CDS) from alignment at scaffold_14:102645..105092- >mRNA_5932 ID=mRNA_5932|Name=jgi.p|Nanoce1779_2|593186|organism=Nannochloropsis oceanica|type=CDS|length=3570bp|location=Sequence derived from alignment at scaffold_14:102645..105092- (Nannochloropsis oceanica)
ATGTCAGGCGCCCTCGACGGTGCCGCCAATAAGATCGGTACAGCCGGGAC
CAACACCGGCAGCACCAGCAGCGCCAGCAGCGCCGCCAGCTCTGCCAAAA
CCTTACCCCAGATACTCCAGAACTCGAACAACCCGAACGTGGCGAGCATT
GGTAATTTGGCGCAGAACTCCGGCTTGATGCCCACCAACAGCATCAATTC
GGTCAAGAACGCCAATCCCGAGCTGGCCACGATGCTAAGTGCCCTGACCG
CCGGTGCGGGCATTAGCCAGTCCATGACTCAGTGCTACGGCTCTATCGAA
GGGGATGAGGATGCCATCCAGTCGTCGCTTGTCTCTTTAGGAACCAGCAT
GGTCAACTCTGACTCGATCACGGCCGCCGCTGGAGTGGGTAAGGCGCTGA
TTACTGCCGCACCCGGCGCTACTGCGAGCGAGAAGGACGCCATGTACAAT
CTGTTCCGCATTTACCTCGACCAGAACGCCAACGCTGGCAAGGCGCTAAC
CACCACCCAACAGAAGGCTTACAGCTCTTTGACCCCTGAGTGTAATGCTG
CCTTTGATGAAATCGTCACCACGTACCAGAACAGCAAGGGCACCGTCAGC
TCCCTCATGGCGGGGGGTAAGAGCAACGTGACCTGCTCCAACTTCCAGGA
CAACACCACCTTTGTCGACATGACTCTCTGTGTCTGGCCCTCCGCCGTCT
GGTCGCACAAGGAGAAGGGCATCATGGCCAATATCACTGCCACCTTCACC
AATTACGGGGTGGGCCTCTGCGACGTTTCGTTCTACATCATCAACCTCGC
GGAAAACATCGGTCTTAAGCCCACCTGGCTGCCCGATTCCAAGAAGGCTT
TCCCCGACGGCATTCCCCAGGGGACCGAGATCGAGATCCAGGCCGTCGTC
CCCTGGACGAATGAAATCGCCGAGAACAAGCCTGTGGTAGATATCCTTAA
GGGATGGTCTGCCTGCCCCAACGGTCGCGCCACCCCTGCTCCTACCGCGG
CTCGCACTGCAGAGCCCAAGATTGACACCGAAGTAATCAACTCGGCCGCG
GCGTGCTTTATCACGGACGCCTGCAAGACCGCCGTGACCCCCTTTAAAGA
CGACCAGTGCGGGGCCTACACCCAACTGCTGACCTCCGGCTGCTCCACGT
GCTCTGATGAGGTGCTTATGTCTGCGACAAAGTCCTGCTTGGCGTCCTGC
CAGGCTAATGCTTGCGGGGCCATGGCTCAGGTCACGAGCGGGGCCGGCGC
GCTTTCCAAGGCTGTGGCCTTCGTGGTCACCCTCGTTACTGCCTTTGCCT
TTGTCCTTTAAATGCGTGTCTTCCGCCTGGTCCTCACCGTGGCCCTGGCC
GCCGCTGTCTTTGCCAATGAGGCCGTCACCACCGAGACCGACACCGAACT
TGCCACCGTGCAGGGCTCTGTAGACGGAGCGGTTGAGGTTACGCCAGATG
CTCCCGTCACCGAGACTGACGCCGAACTTGCCACCGTGCAGGACAATGTA
GATGAGACGATTGAGGTTACGCCGGAAGCCCCCGTCTCCGAGACCAACGC
CGAGCTTGCGGTCGTGCAGGGCACAGAAGATGAGGCGATTGAGATTACAC
CGGAAGAAGCTCAAACTGCTGAGGCCGACGCTGAACTTGCTGCCGTGCAG
GGCACTGTAGATGAGGCGGTTGACGTCACGCCTGAAGCTGCCAACGCCAC
CGATGCCGACATGGATGAAATCAAGAGCAAGGCCGCGGATGCCCTGAAGC
GGGCGGCCGACTCCGAGATCGCTAAGGACAACAATATGTCAGGCGCCCTC
GACGGTGCCGCCAATAAGATCGGTACAGCCGGGACCAACACCGGCAGCAC
CAGCAGCGCCAGCAGCGCCGCCAGCTCTGCCAAAACCTTACCCCAGATAC
TCCAGAACTCGAACAACCCGAACGTGGCGAGCATTGGTAATTTGGCGCAG
AACTCCGGCTTGATGCCCACCAACAGCATCAATTCGGTCAAGAACGCCAA
TCCCGAGCTGGCCACGATGCTAAGTGCCCTGACCGCCGGTGCGGGCATTA
GCCAGTCCATGACTCAGTGCTACGGCTCTATCGAAGGGGATGAGGATGCC
ATCCAGTCGTCGCTTGTCTCTTTAGGAACCAGCATGGTCAACTCTGACTC
GATCACGGCCGCCGCTGGAGTGGGTAAGGCGCTGATTACTGCCGCACCCG
GCGCTACTGCGAGCGAGAAGGACGCCATGTACAATCTGTTCCGCATTTAC
CTCGACCAGAACGCCAACGCTGGCAAGGCGCTAACCACCACCCAACAGAA
GGCTTACAGCTCTTTGACCCCTGAGTGTAATGCTGCCTTTGATGAAATCG
TCACCACGTACCAGAACAGCAAGGGCACCGTCAGCTCCCTCATGGCGGGG
GGTAAGAGCAACGTGACCTGCTCCAACTTCCAGGACAACACCACCTTTGT
CGACATGACTCTCTGTGTCTGGCCCTCCGCCGTCTGGTCGCACAAGGAGA
AGGGCATCATGGCCAATATCACTGCCACCTTCACCAATTACGGGGTGGGC
CTCTGCGACGTTTCGTTCTACATCATCAACCTCGCGGAAAACATCGGTCT
TAAGCCCACCTGGCTGCCCGATTCCAAGAAGGCTTTCCCCGACGGCATTC
CCCAGGGGACCGAGATCGAGATCCAGGCCGTCGTCCCCTGGACGAATGAA
ATCGCCGAGAACAAGCCTGTGGTAGATATCCTTAAGGGATGGTCTGCCTG
CCCCAACGGTCGCGCCACCCCTGCTCCTACCGCGGCTCGCACTGCAGAGC
CCAAGATTGACACCGAAGTAATCAACTCGGCCGCGGCGTGCTTTATCACG
GACGCCTGCAAGACCGCCGTGACCCCCTTTAAAGACGACCAGTGCGGGGC
CTACACCCAACTGCTGACCTCCGGCTGCTCCACGTGCTCTGATGAGGTGC
TTATGTCTGCGACAAAGTCCTGCTTGGCGTCCTGCCAGGCTAATGCTTGC
GGGGCCATGGCTCAGGTCACGAGCGGGGCCGGCGCGCTTTCCAAGGCTGT
GGCCTTCGTGGTCACCCTCGTTACTGCCTTTGCCTTTGTCCTTTAAATGC
GTGTCTTCCGCCTGGTCCTCACCGTGGCCCTGGCCGCCGCTGTCTTTGCC
AATGAGGCCGTCACCACCGAGACCGACACCGAACTTGCCACCGTGCAGGG
CTCTGTAGACGGAGCGGTTGAGGTTACGCCAGATGCTCCCGTCACCGAGA
CTGACGCCGAACTTGCCACCGTGCAGGACAATGTAGATGAGACGATTGAG
GTTACGCCGGAAGCCCCCGTCTCCGAGACCAACGCCGAGCTTGCGGTCGT
GCAGGGCACAGAAGATGAGGCGATTGAGATTACACCGGAAGAAGCTCAAA
CTGCTGAGGCCGACGCTGAACTTGCTGCCGTGCAGGGCACTGTAGATGAG
GCGGTTGACGTCACGCCTGAAGCTGCCAACGCCACCGATGCCGACATGGA
TGAAATCAAGAGCAAGGCCGCGGATGCCCTGAAGCGGGCGGCCGACTCCG
AGATCGCTAAGGACAACAAT back to top
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