jgi.p|Nanoce1779_2|593182, mRNA_5931 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593182
Unique NamemRNA_5931
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1954
Alignment locationscaffold_14:99842..101795 -

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Properties
Property NameValue
TranscriptId593268
TrackFilteredModels2
ProteinId593182
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:99842..101795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593182gene_5931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593182mRNA_5931-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5931CDS_5931Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5931 ID=mRNA_5931|Name=jgi.p|Nanoce1779_2|593182|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp
ACAGGACACTCTGTTCATCCAAGATGAGGGTCCAGCGCCACTTAATATGC
GTCGTCGCCTTTCTCTGTACGTCCCTGCTGTCCTCTCCCTCTCTGCGTTC
CCGTATCCTTGTCACTCATGCTTTTGACCCATCTAATTCTTGCATCCTCA
CAAATATAGCCACGGGGTCCTTACTGAGTAGCACCAACTACTTTTTCTTC
TTTGCCGAGGCCCAGCGCATTCGTGGGGGGTCTTCCACAACCAACCACGC
TGTCGAGACAGGCACTGCCGTCAACGTGCCTGTTGCTCAACCCCAGGAGA
CGGCTCCTGATGCCACCCTAGCTGTCTCAGAGACTATCAAAGGCGTCAAC
TCGAATAACAAGGCCCGTGTGACCATTCGACGCAAGGAGGATGCCAACAA
GCCTCCAGCCCACACGAGTGAGGAGTTGCAGCAACACCCGATGCCACTGC
AGGAAATGACTTTGCTCGTAAACAAACAGCAGCAACCACGACAAGATGAT
ACAGTGGCTGTAGCCATCGACCCACCCGTCGTACCTGCGTTTGCAGCGGG
AGAGCCCAACCCATCGGCGCCTCACGAGCACCCGCACAAGCATCACACCC
ATTTGGACTTTGAGCGCCGTGCGACCCACGGCGTAGAGGAAGAGGAGGTC
ACAAAGAGGATGGAAGAGGGAAACGTTATTGGAAAAGTGGAGAGCAGCAA
TGAATTGCCCGTGGATGTGCACCAGCATGATGAGAATCATTCGTCCAAAA
AGCTGACATTGAAAGAGTTCTTAATAAAGTTTGGGGAGGATGGGAGAAAG
GGTAAAAGGCCGGCAGGATCAGCAGCAATAGCAGGAGGAGATGGAGGAAT
AGGTGTGTCGGTCAGAAACGAACCTGACAAACGACGTGATGAGGAGAGGG
AGGAGGCGAAAGATGTTTCGGGGAAGAAGAAGGAGGAGCCAAAGCAAGGA
GAGGGGGAGATAAGGGCCGTTGGTGACGATAGGTCTGCTGCTGGTACCGT
CGCTGCTGGTACTGTAAAAATAGGAGGTTTAAGAGGCACAATACAGCACG
CAGAAGCAGGGGCGATTGAATTGGAGGGTGATATTAAGGAGGCCACGAAG
CGCTTGCGAGTTGCCGGAGGGGGAGAGCAGCAGAAGGATGAGTACATGAA
GTCCAATGCGTTTCGAGAGCGCAAGGCTGGGGAGAACGATGAGGATGACG
GCCCTCCAGGCACTCCGCGCACGGACCGGCCAGCGTCAGGTTCGGTGGAA
GAGGTAAGGAAGGAATGCACGGGGGGTATGGTCTATTCGGAATGTGGCCG
ACCATGCACGGCGACATGTGAGCATCCTCGGCCGGTGTGTCCGGCAGTTT
GTAGGCCTCGTTGCCATTGTCCCTCAGCAAAGCCTATCTGGAATGGGGAT
ACGTGCATCGAAGAGACAGAGTGTCATCTTAGTAATGAAGGGGAGGAAGA
CGGAGGGGGGGCGCCCGCGAGGTCGTTGCGGGGAGCAAAGTAACAGCAGA
GGAAACAAAAAGGAAAAGAGGAAAGATAAAAAAAAAATAGTTGTATTTAA
ATAGGGGGAAGGAGAGATAGAGATGAATGCCTGTATATGCATAGTTACAT
TTTGGTGATCGAAAAAAGGAGGGATGGGAGGGAGGGTGAACGACGACATA
GTAATTGCAGCAGCACTTGAGGCCGCGTACGCGGTACCTAAATAAATGGG
AGGGCTGGGTGTCCATTCTTACCAATTTCAAGTCAACACCACCACGATGA
AACAAAATAAGAGCAAAACTTGACCAAAGAAGGAGAGAGAGTGGAGAAGT
GATAGACAGAAAGAGAAATAGAAGGAAGCGGAGATTTTTTTAGGAATTAA
GGGTAGAATTAATGGTGGTGGAGGATTGATGTTTGATAACCAGCCCGCAT
TTACGCGTCTCAGTTTCAACATTTCTTATGTGATGAATTGAAATTCTATT
CAAT
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protein sequence of jgi.p|Nanoce1779_2|593182

>mRNA_5931-protein ID=mRNA_5931-protein|Name=jgi.p|Nanoce1779_2|593182|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MRVQRHLICVVAFLCTSLLSSPSLRSRILVTHAFDPSNSCILTNIATGSL
LSSTNYFFFFAEAQRIRGGSSTTNHAVETGTAVNVPVAQPQETAPDATLA
VSETIKGVNSNNKARVTIRRKEDANKPPAHTSEELQQHPMPLQEMTLLVN
KQQQPRQDDTVAVAIDPPVVPAFAAGEPNPSAPHEHPHKHHTHLDFERRA
THGVEEEEVTKRMEEGNVIGKVESSNELPVDVHQHDENHSSKKLTLKEFL
IKFGEDGRKGKRPAGSAAIAGGDGGIGVSVRNEPDKRRDEEREEAKDVSG
KKKEEPKQGEGEIRAVGDDRSAAGTVAAGTVKIGGLRGTIQHAEAGAIEL
EGDIKEATKRLRVAGGGEQQKDEYMKSNAFRERKAGENDEDDGPPGTPRT
DRPASGSVEEVRKECTGGMVYSECGRPCTATCEHPRPVCPAVCRPRCHCP
SAKPIWNGDTCIEETECHLSNEGEEDGGGAPARSLRGAK*
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mRNA from alignment at scaffold_14:99842..101795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5931 ID=mRNA_5931|Name=jgi.p|Nanoce1779_2|593182|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at scaffold_14:99842..101795- (Nannochloropsis oceanica)
ACAGGACACTCTGTTCATCCAAGATGAGGGTCCAGCGCCACTTAATATGC
GTCGTCGCCTTTCTCTGTACGTCCCTGCTGTCCTCTCCCTCTCTGCGTTC
CCGTATCCTTGTCACTCATGCTTTTGACCCATCTAATTCTTGCATCCTCA
CAAATATAGCCACGGGGTCCTTACTGAGTAGCACCAACTACTTTTTCTTC
TTTGCCGAGGCCCAGCGCATTCGTGGGGGGTCTTCCACAACCAACCACGC
TGTCGAGACAGGCACTGCCGTCAACGTGCCTGTTGCTCAACCCCAGGAGA
CGGCTCCTGATGCCACCCTAGCTGTCTCAGAGACTATCAAAGGCGTCAAC
TCGAATAACAAGGCCCGTGTGACCATTCGACGCAAGGAGGATGCCAACAA
GCCTCCAGCCCACACGAGTGAGGAGTTGCAGCAACACCCGATGCCACTGC
AGGAAATGACTTTGCTCGTAAACAAACAGCAGCAACCACGACAAGATGAT
ACAGTGGCTGTAGCCATCGACCCACCCGTCGTACCTGCGTTTGCAGCGGG
AGAGCCCAACCCATCGGCGCCTCACGAGCACCCGCACAAGCATCACACCC
ATTTGGACTTTGAGCGCCGTGCGACCCACGGCGTAGAGGAAGAGGAGGTC
ACAAAGAGGATGGAAGAGGGAAACGTTATTGGAAAAGTGGAGAGCAGCAA
TGAATTGCCCGTGGATGTGCACCAGCATGATGAGAATCATTCGTCCAAAA
AGCTGACATTGAAAGAGTTCTTAATAAAGTTTGGGGAGGATGGGAGAAAG
GGTAAAAGGCCGGCAGGATCAGCAGCAATAGCAGGAGGAGATGGAGGAAT
AGGTGTGTCGGTCAGAAACGAACCTGACAAACGACGTGATGAGGAGAGGG
AGGAGGCGAAAGATGTTTCGGGGAAGAAGAAGGAGGAGCCAAAGCAAGGA
GAGGGGGAGATAAGGGCCGTTGGTGACGATAGGTCTGCTGCTGGTACCGT
CGCTGCTGGTACTGTAAAAATAGGAGGTTTAAGAGGCACAATACAGCACG
CAGAAGCAGGGGCGATTGAATTGGAGGGTGATATTAAGGAGGCCACGAAG
CGCTTGCGAGTTGCCGGAGGGGGAGAGCAGCAGAAGGATGAGTACATGAA
GTCCAATGCGTTTCGAGAGCGCAAGGCTGGGGAGAACGATGAGGATGACG
GCCCTCCAGGCACTCCGCGCACGGACCGGCCAGCGTCAGGTTCGGTGGAA
GAGGTAAGGAAGGAATGCACGGGGGGTATGGTCTATTCGGAATGTGGCCG
ACCATGCACGGCGACATGTGAGCATCCTCGGCCGGTGTGTCCGGCAGTTT
GTAGGCCTCGTTGCCATTGTCCCTCAGCAAAGCCTATCTGGAATGGGGAT
ACGTGCATCGAAGAGACAGAGTGTCATCTTAGTAATGAAGGGGAGGAAGA
CGGAGGGGGGGCGCCCGCGAGGTCGTTGCGGGGAGCAAAGTAACAGCAGA
GGAAACAAAAAGGAAAAGAGGAAAGATAAAAAAAAAATAGTTGTATTTAA
ATAGGGGGAAGGAGAGATAGAGATGAATGCCTGTATATGCATAGTTACAT
TTTGGTGATCGAAAAAAGGAGGGATGGGAGGGAGGGTGAACGACGACATA
GTAATTGCAGCAGCACTTGAGGCCGCGTACGCGGTACCTAAATAAATGGG
AGGGCTGGGTGTCCATTCTTACCAATTTCAAGTCAACACCACCACGATGA
AACAAAATAAGAGCAAAACTTGACCAAAGAAGGAGAGAGAGTGGAGAAGT
GATAGACAGAAAGAGAAATAGAAGGAAGCGGAGATTTTTTTAGGAATTAA
GGGTAGAATTAATGGTGGTGGAGGATTGATGTTTGATAACCAGCCCGCAT
TTACGCGTCTCAGTTTCAACATTTCTTATGTGATGAATTGAAATTCTATT
CAAT
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Coding sequence (CDS) from alignment at scaffold_14:99842..101795-

>mRNA_5931 ID=mRNA_5931|Name=jgi.p|Nanoce1779_2|593182|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_14:99842..101795- (Nannochloropsis oceanica)
ATGAGGGTCCAGCGCCACTTAATATGCGTCGTCGCCTTTCTCTGTACGTC
CCTGCTGTCCTCTCCCTCTCTGCGTTCCCGTATCCTTGTCACTCATGCTT
TTGACCCATCTAATTCTTGCATCCTCACAAATATAGCCACGGGGTCCTTA
CTGAGTAGCACCAACTACTTTTTCTTCTTTGCCGAGGCCCAGCGCATTCG
TGGGGGGTCTTCCACAACCAACCACGCTGTCGAGACAGGCACTGCCGTCA
ACGTGCCTGTTGCTCAACCCCAGGAGACGGCTCCTGATGCCACCCTAGCT
GTCTCAGAGACTATCAAAGGCGTCAACTCGAATAACAAGGCCCGTGTGAC
CATTCGACGCAAGGAGGATGCCAACAAGCCTCCAGCCCACACGAGTGAGG
AGTTGCAGCAACACCCGATGCCACTGCAGGAAATGACTTTGCTCGTAAAC
AAACAGCAGCAACCACGACAAGATGATACAGTGGCTGTAGCCATCGACCC
ACCCGTCGTACCTGCGTTTGCAGCGGGAGAGCCCAACCCATCGGCGCCTC
ACGAGCACCCGCACAAGCATCACACCCATTTGGACTTTGAGCGCCGTGCG
ACCCACGGCGTAGAGGAAGAGGAGGTCACAAAGAGGATGGAAGAGGGAAA
CGTTATTGGAAAAGTGGAGAGCAGCAATGAATTGCCCGTGGATGTGCACC
AGCATGATGAGAATCATTCGTCCAAAAAGCTGACATTGAAAGAGTTCTTA
ATAAAGTTTGGGGAGGATGGGAGAAAGGGTAAAAGGCCGGCAGGATCAGC
AGCAATAGCAGGAGGAGATGGAGGAATAGGTGTGTCGGTCAGAAACGAAC
CTGACAAACGACGTGATGAGGAGAGGGAGGAGGCGAAAGATGTTTCGGGG
AAGAAGAAGGAGGAGCCAAAGCAAGGAGAGGGGGAGATAAGGGCCGTTGG
TGACGATAGGTCTGCTGCTGGTACCGTCGCTGCTGGTACTGTAAAAATAG
GAGGTTTAAGAGGCACAATACAGCACGCAGAAGCAGGGGCGATTGAATTG
GAGGGTGATATTAAGGAGGCCACGAAGCGCTTGCGAGTTGCCGGAGGGGG
AGAGCAGCAGAAGGATGAGTACATGAAGTCCAATGCGTTTCGAGAGCGCA
AGGCTGGGGAGAACGATGAGGATGACGGCCCTCCAGGCACTCCGCGCACG
GACCGGCCAGCGTCAGGTTCGGTGGAAGAGGTAAGGAAGGAATGCACGGG
GGGTATGGTCTATTCGGAATGTGGCCGACCATGCACGGCGACATGTGAGC
ATCCTCGGCCGGTGTGTCCGGCAGTTTGTAGGCCTCGTTGCCATTGTCCC
TCAGCAAAGCCTATCTGGAATGGGGATACGTGCATCGAAGAGACAGAGTG
TCATCTTAGTAATGAAGGGGAGGAAGACGGAGGGGGGGCGCCCGCGAGGT
CGTTGCGGGGAGCAAAGTAA
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Synonyms
Publications