jgi.p|Nanoce1779_2|75835, mRNA_5930 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|75835
Unique NamemRNA_5930
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length352
Alignment locationscaffold_14:99834..100185 +

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Properties
Property NameValue
TranscriptId75921
TrackFilteredModels2
ProteinId75835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:99834..100185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75835gene_5930Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75835mRNA_5930-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5930CDS_5930Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5930 ID=mRNA_5930|Name=jgi.p|Nanoce1779_2|75835|organism=Nannochloropsis oceanica|type=mRNA|length=352bp
AAATCAACATTGAATAGAATTTCAATTCATCACATAAGAAATGTTGAAAC
TGAGACGCGTAAATGCGGGCTGGTTATCAAACATCAATCCTCCACCACCA
TTAATTCTACCCTTAATTCCTAAAAAAATCTCCGCTTCCTTCTATTTCTC
TTTCTGTCTATCACTTCTCCACTCTCTCTCCTTCTTTGGTCAAGTTTTGC
TCTTATTTTGTTTCATCGTGGTGGTGTTGACTTGAAATTGGTAAGAATGG
ACACCCAGCCCTCCCATTTATTTAGGTACCGCGTACGCGGCCTCAAGTGC
TGCTGCAATTACTATGTCGTCGTTCACCCTCCCTCCCATCCCTCCTTTTT
TC
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protein sequence of jgi.p|Nanoce1779_2|75835

>mRNA_5930-protein ID=mRNA_5930-protein|Name=jgi.p|Nanoce1779_2|75835|organism=Nannochloropsis oceanica|type=polypeptide|length=65bp
MLKLRRVNAGWLSNINPPPPLILPLIPKKISASFYFSFCLSLLHSLSFFG
QVLLLFCFIVVVLT*
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mRNA from alignment at scaffold_14:99834..100185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5930 ID=mRNA_5930|Name=jgi.p|Nanoce1779_2|75835|organism=Nannochloropsis oceanica|type=mRNA|length=352bp|location=Sequence derived from alignment at scaffold_14:99834..100185+ (Nannochloropsis oceanica)
AAATCAACATTGAATAGAATTTCAATTCATCACATAAGAAATGTTGAAAC
TGAGACGCGTAAATGCGGGCTGGTTATCAAACATCAATCCTCCACCACCA
TTAATTCTACCCTTAATTCCTAAAAAAATCTCCGCTTCCTTCTATTTCTC
TTTCTGTCTATCACTTCTCCACTCTCTCTCCTTCTTTGGTCAAGTTTTGC
TCTTATTTTGTTTCATCGTGGTGGTGTTGACTTGAAATTGGTAAGAATGG
ACACCCAGCCCTCCCATTTATTTAGGTACCGCGTACGCGGCCTCAAGTGC
TGCTGCAATTACTATGTCGTCGTTCACCCTCCCTCCCATCCCTCCTTTTT
TC
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Coding sequence (CDS) from alignment at scaffold_14:99834..100185+

>mRNA_5930 ID=mRNA_5930|Name=jgi.p|Nanoce1779_2|75835|organism=Nannochloropsis oceanica|type=CDS|length=195bp|location=Sequence derived from alignment at scaffold_14:99834..100185+ (Nannochloropsis oceanica)
ATGTTGAAACTGAGACGCGTAAATGCGGGCTGGTTATCAAACATCAATCC
TCCACCACCATTAATTCTACCCTTAATTCCTAAAAAAATCTCCGCTTCCT
TCTATTTCTCTTTCTGTCTATCACTTCTCCACTCTCTCTCCTTCTTTGGT
CAAGTTTTGCTCTTATTTTGTTTCATCGTGGTGGTGTTGACTTGA
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Synonyms
Publications