jgi.p|Nanoce1779_2|577871, mRNA_593 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577871
Unique NamemRNA_593
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length371
Alignment locationscaffold_3:1472033..1472755 +

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Properties
Property NameValue
TranscriptId577957
TrackFilteredModels2
ProteinId577871
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1472033..1472755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577871gene_593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577871mRNA_593-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_593CDS_593Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_593 ID=mRNA_593|Name=jgi.p|Nanoce1779_2|577871|organism=Nannochloropsis oceanica|type=mRNA|length=371bp
ACAGGGACACCGAAGCAAAGCCACTGCACTCCACCTCTCCGCACCACCAC
CATGACTACGGAGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCG
GCATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATG
TTCTTCGTGTACGAGATGAAGGTCTCGCACGAGCACTCCTCCCGATCCAT
CATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATTTG
GCACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAAACCGAAGTG
GTCGGAGGGAAGAGCCGTGTGGATGTACTGATTTCAAGAGAGAAAGAAAG
AACTTCAAAAAAGTGATGCGA
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protein sequence of jgi.p|Nanoce1779_2|577871

>mRNA_593-protein ID=mRNA_593-protein|Name=jgi.p|Nanoce1779_2|577871|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSI
ITELSMATLSSTLLGFGTLFLTLWAGVFI*
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mRNA from alignment at scaffold_3:1472033..1472755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_593 ID=mRNA_593|Name=jgi.p|Nanoce1779_2|577871|organism=Nannochloropsis oceanica|type=mRNA|length=723bp|location=Sequence derived from alignment at scaffold_3:1472033..1472755+ (Nannochloropsis oceanica)
ACAGGGACACCGAAGCAAAGCCACTGCACTCCACCTCTCCGCACCACCAC
CATGACTACGGAGGTACGCAACGCCACAAGCCCCTGTTTTCTTGTATCAA
TGCTTCATTCCATGCACGTCGTGCGCAGGCACATTTCCTCCTCACACTGA
CGCCCTCCCTTCCCACCCCACCCTCCATTCCTTCCAACCCCATGATCGCT
GCGTTGATCAGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCGGC
ATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATGTT
CTTCGTGTACGAGATGAAGGTAAGTGGAGATACCAGAGAGGGGGGACAGG
GTGTCTTTTGGGAAGGGGGAGGAATGGCAAGAGGGGGGAAGAAGGAATAG
CTGCATGGTTTGTGCCCTAGGTGGTACCCGAGCGCTGTACTTGTTCTGTC
ATTATGCAAATTGTGGCAAGTATGACCTTGCTGATCGCACTCACCCACAC
CGCTTGCCCCCTCCCTTCCCTAGGTCTCGCACGAGCACTCCTCCCGATCC
ATCATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATT
TGGCACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAAACCGAAG
TGGTCGGAGGGAAGAGCCGTGTGGATGTACTGATTTCAAGAGAGAAAGAA
AGAACTTCAAAAAAGTGATGCGA
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Coding sequence (CDS) from alignment at scaffold_3:1472033..1472755+

>mRNA_593 ID=mRNA_593|Name=jgi.p|Nanoce1779_2|577871|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_3:1472033..1472755+ (Nannochloropsis oceanica)
ATGACTACGGAGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCGG
CATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATGT
TCTTCGTGTACGAGATGAAGGTCTCGCACGAGCACTCCTCCCGATCCATC
ATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATTTGG
CACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAAATGACTACGG
AGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCGGCATCCTGTCC
CTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATGTTCTTCGTGTA
CGAGATGAAGGTCTCGCACGAGCACTCCTCCCGATCCATCATCACTGAGT
TGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATTTGGCACCCTTTTT
CTCACATTGTGGGCAGGAGTATTCATTTAAATGACTACGGAGGCCGCTTA
CTACAGCCCCGTGGACCCCGCTTTGTTCGGCATCCTGTCCCTCATCTTGA
TTGGCTCGGGGCTTTCGTTCATGGCAATGTTCTTCGTGTACGAGATGAAG
GTCTCGCACGAGCACTCCTCCCGATCCATCATCACTGAGTTGTCCATGGC
CACTCTTTCGTCCACTCTCCTCGGATTTGGCACCCTTTTTCTCACATTGT
GGGCAGGAGTATTCATTTAA
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Synonyms
Publications