jgi.p|Nanoce1779_2|75878, mRNA_5928 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|75878
Unique NamemRNA_5928
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1532
Alignment locationscaffold_14:93763..95406 -

Link to JBrowse

Properties
Property NameValue
TranscriptId75964
TrackFilteredModels2
ProteinId75878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:93763..95406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75878gene_5928Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75878mRNA_5928-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5928CDS_5928Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5928 ID=mRNA_5928|Name=jgi.p|Nanoce1779_2|75878|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
TCTTTCCACCCACACTCCCAGTCAGGGCCAGAGCGGCCTGCGCCAGCCTA
GCTGTGGTGCTGGCTGCTGCTGCTGCTGCTGCTGCAGCAGCAGCAGCAGC
AGCCGCTTCCTTCTGCCGACGTTCCTCCTGGAAAAGCCGAATACGCTCCG
CCCTTTTCTGCATCTCTCTCTCCGCTACTGCCTCAGCATCTTCCACCTCC
TGCCCTCCCTGCCCTCCCTGCCCCGCTTCCTCCGTCGTGGTCGTCGTCGC
CGGCGGTGCTGCAGATGCAGAAGGAGGGGAGGAGGAGGCTAGAAGGGTAC
TCGCTGCCGCTACTGCTGCTGCTGTCCCTGCTTGGTTCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTTCAGAAGCTGCTGCGCAGCCACAAATTGCGCGAG
CGCGGCGGATCGCTTGCAGTAGAGGCGGCCCTGGCCTTTTCCTCCTTCTC
GGCCTCCCCTCCTGTTCCTCCTCCTCCTGTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCATTCCCTCCCCGACGGTGCTCCCGCTTTCTCTCCCCCCTC
TCTCCTTCCCTGCCTCCATCCCTGTCTCTCCCCTTCTCCCTTTCCCTCTC
CCTATCAGGCCTCTCTTTCTTCTTCTCCAGCCTACTCCTCTTCTCCTTCC
GTTCCCGCGACCGCGACCGGCTCCTGCTCCTGTCGTTGCTCCTGCTCCTG
CTTCGTCTGCGGCTGCTGCTTCCTCCCTCTCCACCTCCCCCTCCTCCCCC
ACTCCCCCTCCGCCTATGTTGACTCTCAGACTCTTTTTCTCGGTCTCGGT
CCCGATCCCTGTGGTGGTGGTGACGGGAGGAGGACGAGGAGGTGGATGGG
TCGGTGTGGCGGGAGGAGGACGCAGCGGCGGAGGAAATATTGGAGGGGGA
AGGACTCCGACTCGTCTCTCCTCGCCGTTTTTCGCGCTTCTGCTTCTTTT
CCTTCTCACTATTGCGGTCGCTGCGATCATTACGGTGATGGTGGTGGTGG
ATGCTGCCACTGCTGCTGCGCCCGCTGCTGCCCCGCGGAAGGGAGCTATC
TCGCTCTCGCTTCCGGCTGCTGCTGTTCTTTCCGCTCTTGTTGCTCTTGC
TGCTGCCGCTGGGCTTGTCGTCCGTCATCTCTCCACTGCTGCCTCCGTTA
CCGGTGGTGATTACGTGTGTTTGATGTATTGGAGCTCCGCAGTTGTGCTG
CTACTGCTGCTGGTATCTGCTCCTACTTCTATTGCTACTGCTACTGCTGT
TGCCAAAACAAACCCATGAATGGTGTGAGTTGCCTTTTCTATGAAGTACA
GAGGAGGAATGGACAGAGAAAGAGAGGTGTGAGTATCGAAATAAAAGGAG
TGGGAACACGTTGGAGGCTTGCTTCATGAGGGATATAATGTGGGAGCGTT
CGTGGGAGGAGACGTGGAACTATGAAATGTGCACTATCTAGTTCCCACTC
ATCAACATTCCCGCATGCACACACACACAGTTACACACACCATGCGCGAC
GGCTGCTTTCGCTTTCGCCTTCGCTCGCCATC
back to top

protein sequence of jgi.p|Nanoce1779_2|75878

>mRNA_5928-protein ID=mRNA_5928-protein|Name=jgi.p|Nanoce1779_2|75878|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MQKEGRRRLEGYSLPLLLLLSLLGSAAAAAAAAASEAAAQPQIARARRIA
CSRGGPGLFLLLGLPSCSSSSCSSSSSSSSSSIPSPTVLPLSLPPLSFPA
SIPVSPLLPFPLPIRPLFLLLQPTPLLLPFPRPRPAPAPVVAPAPASSAA
AASSLSTSPSSPTPPPPMLTLRLFFSVSVPIPVVVVTGGGRGGGWVGVAG
GGRSGGGNIGGGRTPTRLSSPFFALLLLFLLTIAVAAIITVMVVVDAATA
AAPAAAPRKGAISLSLPAAAVLSALVALAAAAGLVVRHLSTAASVTGGDY
VCLMYWSSAVVLLLLLVSAPTSIATATAVAKTNP*
back to top

mRNA from alignment at scaffold_14:93763..95406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5928 ID=mRNA_5928|Name=jgi.p|Nanoce1779_2|75878|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_14:93763..95406- (Nannochloropsis oceanica)
TCTTTCCACCCACACTCCCAGTCAGGGCCAGAGCGGCCTGCGCCAGCCTA
GCTGTGGTGCTGGCTGCTGCTGCTGCTGCTGCTGCAGCAGCAGCAGCAGC
AGCCGCTTCCTTCTGCCGACGTTCCTCCTGGAAAAGCCGAATACGCTCCG
CCCTTTTCTGCATCTCTCTCTCCGCTACTGCCTCAGCATCTTCCACCTCC
TGCCCTCCCTGCCCTCCCTGCCCCGCTTCCTCCGTCGTGGTCGTCGTCGC
CGGCGGTGCTGCAGATGCAGAAGGAGGGGAGGAGGAGGCTAGAAGGGTAC
TCGCTGCCGCTACTGCTGCTGCTGTCCCTGCTTGGTTCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTTCAGAAGCTGCTGCGCAGCCACAAATTGCGCGAG
CGCGGCGGATGCTTGCCCCGGAGCAGCAGGAGGCGCGGAAGGGAGGGAAG
AAGGAACGACAATAGCGGCCGGCTTCTGTTGCATCTTTTGGTTGAGCCGA
GCAATCACGGAGAGGGCAGCAGCGCTTGCAGTAGAGGCGGCCCTGGCCTT
TTCCTCCTTCTCGGCCTCCCCTCCTGTTCCTCCTCCTCCTGTTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCATTCCCTCCCCGACGGTGCTCCCGCTTT
CTCTCCCCCCTCTCTCCTTCCCTGCCTCCATCCCTGTCTCTCCCCTTCTC
CCTTTCCCTCTCCCTATCAGGCCTCTCTTTCTTCTTCTCCAGCCTACTCC
TCTTCTCCTTCCGTTCCCGCGACCGCGACCGGCTCCTGCTCCTGTCGTTG
CTCCTGCTCCTGCTTCGTCTGCGGCTGCTGCTTCCTCCCTCTCCACCTCC
CCCTCCTCCCCCACTCCCCCTCCGCCTATGTTGACTCTCAGACTCTTTTT
CTCGGTCTCGGTCCCGATCCCTGTGGTGGTGGTGACGGGAGGAGGACGAG
GAGGTGGATGGGTCGGTGTGGCGGGAGGAGGACGCAGCGGCGGAGGAAAT
ATTGGAGGGGGAAGGACTCCGACTCGTCTCTCCTCGCCGTTTTTCGCGCT
TCTGCTTCTTTTCCTTCTCACTATTGCGGTCGCTGCGATCATTACGGTGA
TGGTGGTGGTGGATGCTGCCACTGCTGCTGCGCCCGCTGCTGCCCCGCGG
AAGGGAGCTATCTCGCTCTCGCTTCCGGCTGCTGCTGTTCTTTCCGCTCT
TGTTGCTCTTGCTGCTGCCGCTGGGCTTGTCGTCCGTCATCTCTCCACTG
CTGCCTCCGTTACCGGTGGTGATTACGTGTGTTTGATGTATTGGAGCTCC
GCAGTTGTGCTGCTACTGCTGCTGGTATCTGCTCCTACTTCTATTGCTAC
TGCTACTGCTGTTGCCAAAACAAACCCATGAATGGTGTGAGTTGCCTTTT
CTATGAAGTACAGAGGAGGAATGGACAGAGAAAGAGAGGTGTGAGTATCG
AAATAAAAGGAGTGGGAACACGTTGGAGGCTTGCTTCATGAGGGATATAA
TGTGGGAGCGTTCGTGGGAGGAGACGTGGAACTATGAAATGTGCACTATC
TAGTTCCCACTCATCAACATTCCCGCATGCACACACACACAGTTACACAC
ACCATGCGCGACGGCTGCTTTCGCTTTCGCCTTCGCTCGCCATC
back to top

Coding sequence (CDS) from alignment at scaffold_14:93763..95406-

>mRNA_5928 ID=mRNA_5928|Name=jgi.p|Nanoce1779_2|75878|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_14:93763..95406- (Nannochloropsis oceanica)
CGCTTGCAGTAGAGGCGGCCCTGGCCTTTTCCTCCTTCTCGGCCTCCCCT
CCTGTTCCTCCTCCTCCTGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
ATTCCCTCCCCGACGGTGCTCCCGCTTTCTCTCCCCCCTCTCTCCTTCCC
TGCCTCCATCCCTGTCTCTCCCCTTCTCCCTTTCCCTCTCCCTATCAGGC
CTCTCTTTCTTCTTCTCCAGCCTACTCCTCTTCTCCTTCCGTTCCCGCGA
CCGCGACCGGCTCCTGCTCCTGTCGTTGCTCCTGCTCCTGCTTCGTCTGC
GGCTGCTGCTTCCTCCCTCTCCACCTCCCCCTCCTCCCCCACTCCCCCTC
CGCCTATGTTGACTCTCAGACTCTTTTTCTCGGTCTCGGTCCCGATCCCT
GTGGTGGTGGTGACGGGAGGAGGACGAGGAGGTGGATGGGTCGGTGTGGC
GGGAGGAGGACGCAGCGGCGGAGGAAATATTGGAGGGGGAAGGACTCCGA
CTCGTCTCTCCTCGCCGTTTTTCGCGCTTCTGCTTCTTTTCCTTCTCACT
ATTGCGGTCGCTGCGATCATTACGGTGATGGTGGTGGTGGATGCTGCCAC
TGCTGCTGCGCCCGCTGCTGCCCCGCGGAAGGGAGCTATCTCGCTCTCGC
TTCCGGCTGCTGCTGTTCTTTCCGCTCTTGTTGCTCTTGCTGCTGCCGCT
GGGCTTGTCGTCCGTCATCTCTCCACTGCTGCCTCCGTTACCGGTGGTGA
TTACGTGTGTTTGATGTATTGGAGCTCCGCAGTTGTGCTGCTACTGCTGC
TGGTATCTGCTCCTACTTCTATTGCTACTGCTACTGCTGTTGCCAAAACA
AACCCATGAATGCAGAAGGAGGGGAGGAGGAGGCTAGAAGGGTACTCGCT
GCCGCTACTGCTGCTGCTGTCCCTGCTTGGTTCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTTCAGAAGCTGCTGCGCAGCCACAAATTGCGCGAGCGCGG
CGGATCGCTTGCAGTAGAGGCGGCCCTGGCCTTTTCCTCCTTCTCGGCCT
CCCCTCCTGTTCCTCCTCCTCCTGTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCATTCCCTCCCCGACGGTGCTCCCGCTTTCTCTCCCCCCTCTCTCC
TTCCCTGCCTCCATCCCTGTCTCTCCCCTTCTCCCTTTCCCTCTCCCTAT
CAGGCCTCTCTTTCTTCTTCTCCAGCCTACTCCTCTTCTCCTTCCGTTCC
CGCGACCGCGACCGGCTCCTGCTCCTGTCGTTGCTCCTGCTCCTGCTTCG
TCTGCGGCTGCTGCTTCCTCCCTCTCCACCTCCCCCTCCTCCCCCACTCC
CCCTCCGCCTATGTTGACTCTCAGACTCTTTTTCTCGGTCTCGGTCCCGA
TCCCTGTGGTGGTGGTGACGGGAGGAGGACGAGGAGGTGGATGGGTCGGT
GTGGCGGGAGGAGGACGCAGCGGCGGAGGAAATATTGGAGGGGGAAGGAC
TCCGACTCGTCTCTCCTCGCCGTTTTTCGCGCTTCTGCTTCTTTTCCTTC
TCACTATTGCGGTCGCTGCGATCATTACGGTGATGGTGGTGGTGGATGCT
GCCACTGCTGCTGCGCCCGCTGCTGCCCCGCGGAAGGGAGCTATCTCGCT
CTCGCTTCCGGCTGCTGCTGTTCTTTCCGCTCTTGTTGCTCTTGCTGCTG
CCGCTGGGCTTGTCGTCCGTCATCTCTCCACTGCTGCCTCCGTTACCGGT
GGTGATTACGTGTGTTTGATGTATTGGAGCTCCGCAGTTGTGCTGCTACT
GCTGCTGGTATCTGCTCCTACTTCTATTGCTACTGCTACTGCTGTTGCCA
AAACAAACCCATGAATGCAGAAGGAGGGGAGGAGGAGGCTAGAAGGGTAC
TCGCTGCCGCTACTGCTGCTGCTGTCCCTGCTTGGTTCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTTCAGAAGCTGCTGCGCAGCCACAAATTGCGCGAG
CGCGGCGGAT
back to top
Synonyms
Publications