jgi.p|Nanoce1779_2|593158, mRNA_5926 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593158
Unique Name	mRNA_5926
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1212
Alignment location	scaffold_14:87826..89530 -

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Properties


Property Name	Value
TranscriptId	593244
Track	FilteredModels2
ProteinId	593158

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:87826..89530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593158	gene_5926	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593158	mRNA_5926-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5926	CDS_5926	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:87826..89530-
coding sequence from alignment at scaffold_14:87826..89530-

mRNA sequence

>mRNA_5926 ID=mRNA_5926|Name=jgi.p|Nanoce1779_2|593158|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ACAGACACTTCCACCCACCCACATCACGATGCGCGGCGGTTCAGCGACCC
AATCCCAACGCGGGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGAC
AATTATTCCAGAAATGCCTCCTTACCAACGGAGAAGACTCTGCACTTGCC
CTCGGCAATGAAGACCGGCACCACTATTGCAGGCGTCGTTTTTAAGGATG
GCGTCGTCCTGGGTGCCGACACGCGTGCCACAGGCGGCACTGAAGTTGCT
GACAAAAACTGTGAGAAGATTCACTATTTGGCTCCCAATATTTACTGTTG
TGGTGCGGGCACTGCGGCGGACACCGAGAAGACGACGGAGATCATCAGCT
CGCAACTCGACCTTCTCCGCCTTTCCACCGGCTCGCCCTCCCGCGTAGTA
ACGGCCTGCACGATGCTGAAACGCATGCTCTTCCGTTACCAGGGCCACGT
GTCCGCTGCCCTTGTCTTGGGAGGCGTAGACAGCTCAGGAGCGCATCTAT
ACCAGATTTATCCACACGGATCGACGGACAAGAACCCGTATGTGACCATG
GGCAGTGGGAGTCTGGCGGCCATGAGCGTGTTTGAGACCGGCTTCAAAGA
AGACATGAGCGAGGCGGAAGCCATGGAGCTGGTTAAGGAAGCCATCTTAG
CAGGCATCTTCAACGACCTCGGATCGGGCTCCAATGTCGACCTGACCATC
ATCCGCAAATCCGGGGAGGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAA
CGATCTCGACCCTCTTCGTACCTCCTACGCTCGTCCTTCTGCTCTGACCA
TCCCTGCGGGCGCCACTGCGGTAACGGCCTCTCACTTCGAGCCGGCAAGG
AAGGCGCTAGAGGGCTTGGTGATTGAGGATGCCACGGCCATGACATTTTG
AGGAAGGGGAGAGAAAATAAAGGAGGGGGGAGGGGGCGTGGCAGGTTGTG
CGACTGTCCTGATGCGAGGGGAGAAAGAGAAGGAGGAGGCGGAGGCGGAG
GCTGGGAAAGTCTGAACGGAGGAGTAGGAAAAAAGGGAGGAAGCGGGTTG
GCCGATGGGCCAAGAGGAGAAGGAGGAGGTGGGCACGTGTGTGTGTGAGT
AGGGGGAGCAGACGGGCAGAAGGCAGACAGGCATGAACGCCAACGGCAAA
AAACAAGAGAAACATGGATTTAAAAACAAAAGAAAGAAAAAAAAAACAAA
AGGAACTGGTGA

protein sequence of jgi.p|Nanoce1779_2|593158

>mRNA_5926-protein ID=mRNA_5926-protein|Name=jgi.p|Nanoce1779_2|593158|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MRGGSATQSQRGALKEDAPGFNFDNYSRNASLPTEKTLHLPSAMKTGTTI
AGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTE
KTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGV
DSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAME
LVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSY
ARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAMTF*

mRNA from alignment at scaffold_14:87826..89530-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5926 ID=mRNA_5926|Name=jgi.p|Nanoce1779_2|593158|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp|location=Sequence derived from alignment at scaffold_14:87826..89530- (Nannochloropsis oceanica)
ACAGACACTTCCACCCACCCACATCACGATGCGCGGCGGTTCAGCGACCC
AATCCCAACGCGGGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGAC
AATTATTCCAGAAATGCCTCCTTACCAACGGAGAAGACTCTGCACTTGCC
CTCGGTACGTGGAAGGAAGGAGAAAAAAATATTGGGAGGGAAGTTACAGT
CAATAATGCGAGTTCTGTGCGGGGAAGCTTTAGCAGGGGACATTTGGTCT
ATGCTCCACGCACTTACCCTTCCCGTCCAACTCTCCCTCTTTTCTTCCCT
CCCCTGCACTCCCTCAGGCAATGAAGACCGGCACCACTATTGCAGGCGTC
GTTTTTAAGGATGGCGTCGTCCTGGGTGCCGACACGCGTGCCACAGGCGG
CACTGAAGTTGCTGACAAAAACTGTGAGAAGATTCACTATTTGGCTCCCA
ATATTTACTGTTGTGGTGCGGGCACTGCGGCGGACACCGAGAAGACGACG
GAGATCATCAGGTAATGGAGGAAGTGGAGGGAGGGTGCGAGGAAAGAAGA
AAGGGGAGGAATCGCTCTCGTATGTGAATGTGTCTAAAGAAGACATACCA
ACCCCCCTTCCCTAATATCTCTGCAATGACAGCTCGCAACTCGACCTTCT
CCGCCTTTCCACCGGCTCGCCCTCCCGCGTAGTAACGGCCTGCACGATGC
TGAAACGCATGCTCTTCCGTTACCAGGGCCACGTGTCCGCTGCCCTTGTC
TTGGGAGGCGTAGACAGCTCAGGAGCGCATCTATACCAGATTTATCCACA
CGGATCGACGGACAAGAACCCGTATGTGACCATGGGCAGTGGGAGTCTGG
CGGCCATGAGCGTGTTTGAGACCGGCTTCAAAGAAGACATGAGCGAGGTA
AGAATCTTTAACCTTCCTTCCCTCCTTCCTTTCTTCCTTCCATCTCCTTC
TTGTAGTTGCAGTCGCTATTTGTCGTCCCAACGGCGAATCAGTCATTAGC
TTCAGCCTCAGCAGCACGACCGACATCCTCCTCCCTCATTATCCTCCGCC
ACTGTCTCACCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTTTCTTTCCCA
TCGAAGGCGGAAGCCATGGAGCTGGTTAAGGAAGCCATCTTAGCAGGCAT
CTTCAACGACCTCGGATCGGGCTCCAATGTCGACCTGACCATCATCCGCA
AATCCGGGGAGGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAACGATCTC
GACCCTCTTCGTACCTCCTACGCTCGTCCTTCTGCTCTGACCATCCCTGC
GGGCGCCACTGCGGTAACGGCCTCTCACTTCGAGCCGGCAAGGAAGGCGC
TAGAGGGCTTGGTGATTGAGGATGCCACGGCCATGACATTTTGAGGAAGG
GGAGAGAAAATAAAGGAGGGGGGAGGGGGCGTGGCAGGTTGTGCGACTGT
CCTGATGCGAGGGGAGAAAGAGAAGGAGGAGGCGGAGGCGGAGGCTGGGA
AAGTCTGAACGGAGGAGTAGGAAAAAAGGGAGGAAGCGGGTTGGCCGATG
GGCCAAGAGGAGAAGGAGGAGGTGGGCACGTGTGTGTGTGAGTAGGGGGA
GCAGACGGGCAGAAGGCAGACAGGCATGAACGCCAACGGCAAAAAACAAG
AGAAACATGGATTTAAAAACAAAAGAAAGAAAAAAAAAACAAAAGGAACT
GGTGA

Coding sequence (CDS) from alignment at scaffold_14:87826..89530-

>mRNA_5926 ID=mRNA_5926|Name=jgi.p|Nanoce1779_2|593158|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_14:87826..89530- (Nannochloropsis oceanica)
GCGGAAGCCATGGAGCTGGTTAAGGAAGCCATCTTAGCAGGCATCTTCAA
CGACCTCGGATCGGGCTCCAATGTCGACCTGACCATCATCCGCAAATCCG
GGGAGGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAACGATCTCGACCCT
CTTCGTACCTCCTACGCTCGTCCTTCTGCTCTGACCATCCCTGCGGGCGC
CACTGCGGTAACGGCCTCTCACTTCGAGCCGGCAAGGAAGGCGCTAGAGG
GCTTGGTGATTGAGGATGCCACGGCCATGACATTTTGACTCGCAACTCGA
CCTTCTCCGCCTTTCCACCGGCTCGCCCTCCCGCGTAGTAACGGCCTGCA
CGATGCTGAAACGCATGCTCTTCCGTTACCAGGGCCACGTGTCCGCTGCC
CTTGTCTTGGGAGGCGTAGACAGCTCAGGAGCGCATCTATACCAGATTTA
TCCACACGGATCGACGGACAAGAACCCGTATGTGACCATGGGCAGTGGGA
GTCTGGCGGCCATGAGCGTGTTTGAGACCGGCTTCAAAGAAGACATGAGC
GAGGCAATGAAGACCGGCACCACTATTGCAGGCGTCGTTTTTAAGGATGG
CGTCGTCCTGGGTGCCGACACGCGTGCCACAGGCGGCACTGAAGTTGCTG
ACAAAAACTGTGAGAAGATTCACTATTTGGCTCCCAATATTTACTGTTGT
GGTGCGGGCACTGCGGCGGACACCGAGAAGACGACGGAGATCATCAGATG
CGCGGCGGTTCAGCGACCCAATCCCAACGCGGGGCCTTGAAGGAGGATGC
ACCTGGCTTTAATTTTGACAATTATTCCAGAAATGCCTCCTTACCAACGG
AGAAGACTCTGCACTTGCCCTCGGCGGAAGCCATGGAGCTGGTTAAGGAA
GCCATCTTAGCAGGCATCTTCAACGACCTCGGATCGGGCTCCAATGTCGA
CCTGACCATCATCCGCAAATCCGGGGAGGTTAGCGTCTTGCGTGGCTATG
TCAGCCCCAACGATCTCGACCCTCTTCGTACCTCCTACGCTCGTCCTTCT
GCTCTGACCATCCCTGCGGGCGCCACTGCGGTAACGGCCTCTCACTTCGA
GCCGGCAAGGAAGGCGCTAGAGGGCTTGGTGATTGAGGATGCCACGGCCA
TGACATTTTGACTCGCAACTCGACCTTCTCCGCCTTTCCACCGGCTCGCC
CTCCCGCGTAGTAACGGCCTGCACGATGCTGAAACGCATGCTCTTCCGTT
ACCAGGGCCACGTGTCCGCTGCCCTTGTCTTGGGAGGCGTAGACAGCTCA
GGAGCGCATCTATACCAGATTTATCCACACGGATCGACGGACAAGAACCC
GTATGTGACCATGGGCAGTGGGAGTCTGGCGGCCATGAGCGTGTTTGAGA
CCGGCTTCAAAGAAGACATGAGCGAGGCAATGAAGACCGGCACCACTATT
GCAGGCGTCGTTTTTAAGGATGGCGTCGTCCTGGGTGCCGACACGCGTGC
CACAGGCGGCACTGAAGTTGCTGACAAAAACTGTGAGAAGATTCACTATT
TGGCTCCCAATATTTACTGTTGTGGTGCGGGCACTGCGGCGGACACCGAG
AAGACGACGGAGATCATCAGATGCGCGGCGGTTCAGCGACCCAATCCCAA
CGCGGGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGACAATTATTC
CAGAAATGCCTCCTTACCAACGGAGAAGACTCTGCACTTGCCCTCGGCGG
AAGCCATGGAGCTGGTTAAGGAAGCCATCTTAGCAGGCATCTTCAACGAC
CTCGGATCGGGCTCCAATGTCGACCTGACCATCATCCGCAAATCCGGGGA
GGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAACGATCTCGACCCTCTTC
GTACCTCCTACGCTCGTCCTTCTGCTCTGACCATCCCTGCGGGCGCCACT
GCGGTAACGGCCTCTCACTTCGAGCCGGCAAGGAAGGCGCTAGAGGGCTT
GGTGATTGAGGATGCCACGGCCATGACATTTTGACTCGCAACTCGACCTT
CTCCGCCTTTCCACCGGCTCGCCCTCCCGCGTAGTAACGGCCTGCACGAT
GCTGAAACGCATGCTCTTCCGTTACCAGGGCCACGTGTCCGCTGCCCTTG
TCTTGGGAGGCGTAGACAGCTCAGGAGCGCATCTATACCAGATTTATCCA
CACGGATCGACGGACAAGAACCCGTATGTGACCATGGGCAGTGGGAGTCT
GGCGGCCATGAGCGTGTTTGAGACCGGCTTCAAAGAAGACATGAGCGAGG
CAATGAAGACCGGCACCACTATTGCAGGCGTCGTTTTTAAGGATGGCGTC
GTCCTGGGTGCCGACACGCGTGCCACAGGCGGCACTGAAGTTGCTGACAA
AAACTGTGAGAAGATTCACTATTTGGCTCCCAATATTTACTGTTGTGGTG
CGGGCACTGCGGCGGACACCGAGAAGACGACGGAGATCATCAGATGCGCG
GCGGTTCAGCGACCCAATCCCAACGCGGGGCCTTGAAGGAGGATGCACCT
GGCTTTAATTTTGACAATTATTCCAGAAATGCCTCCTTACCAACGGAGAA
GACTCTGCACTTGCCCTCGGCGGAAGCCATGGAGCTGGTTAAGGAAGCCA
TCTTAGCAGGCATCTTCAACGACCTCGGATCGGGCTCCAATGTCGACCTG
ACCATCATCCGCAAATCCGGGGAGGTTAGCGTCTTGCGTGGCTATGTCAG
CCCCAACGATCTCGACCCTCTTCGTACCTCCTACGCTCGTCCTTCTGCTC
TGACCATCCCTGCGGGCGCCACTGCGGTAACGGCCTCTCACTTCGAGCCG
GCAAGGAAGGCGCTAGAGGGCTTGGTGATTGAGGATGCCACGGCCATGAC
ATTTTGACTCGCAACTCGACCTTCTCCGCCTTTCCACCGGCTCGCCCTCC
CGCGTAGTAACGGCCTGCACGATGCTGAAACGCATGCTCTTCCGTTACCA
GGGCCACGTGTCCGCTGCCCTTGTCTTGGGAGGCGTAGACAGCTCAGGAG
CGCATCTATACCAGATTTATCCACACGGATCGACGGACAAGAACCCGTAT
GTGACCATGGGCAGTGGGAGTCTGGCGGCCATGAGCGTGTTTGAGACCGG
CTTCAAAGAAGACATGAGCGAGGCAATGAAGACCGGCACCACTATTGCAG
GCGTCGTTTTTAAGGATGGCGTCGTCCTGGGTGCCGACACGCGTGCCACA
GGCGGCACTGAAGTTGCTGACAAAAACTGTGAGAAGATTCACTATTTGGC
TCCCAATATTTACTGTTGTGGTGCGGGCACTGCGGCGGACACCGAGAAGA
CGACGGAGATCATCAGATGCGCGGCGGTTCAGCGACCCAATCCCAACGCG
GGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGACAATTATTCCAGA
AATGCCTCCTTACCAACGGAGAAGACTCTGCACTTGCCCTCG

Synonyms

Publications