jgi.p|Nanoce1779_2|593156, mRNA_5925 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593156
Unique Name	mRNA_5925
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1164
Alignment location	scaffold_14:86342..87505 +

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Properties


Property Name	Value
TranscriptId	593242
Track	FilteredModels2
ProteinId	593156

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:86342..87505 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593156	gene_5925	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593156	mRNA_5925-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5925	CDS_5925	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:86342..87505+
coding sequence from alignment at scaffold_14:86342..87505+

mRNA sequence

>mRNA_5925 ID=mRNA_5925|Name=jgi.p|Nanoce1779_2|593156|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
CCCCCCCTACAGGGTGTTATGAAGACAGACTCGGGAGTAAATCGCATCCC
CTCTTCTTCCCCTTCCTTCTCGTATCCCTCTTCTCGTTCCCTCACCTCGT
TGTCCTCGTCCTTCTTTTCCTTCGTTTCCGTCGTCGTCTTCTTCTTCTTC
CCCTCCCCCTCCTTCTCCTCCTCTACTTCCGGCTCCCCGTTCCCCCTCAT
GCTTGAAGCAGGCTCCATCAAAAGAATCTCAAAAGATGAATTGGACACTA
TCCCTCTCGTCTCTCTCTCTTCTCTCCTTTCCTCTTTCCTTCCTTCCTCC
CCTTGGCTACAAATCAATTCCACCACCGCCGCTAACTCCCCCCCTTTTTC
CTTCCCTGCCTCCTCACCTACCGGGAAAAAAACCGAGGGCGAGAGTGGGG
CGAGCATAGACTCTCCTCCGACGGGAAATACCTCATTTTTATCGCTATTG
CCACTGCTGCTACCGCTGCTGCAGCTGCTGGCGGTGATGGTGGTCGTGGT
GTTCCTAATGCAGCTGCTGCTGCTGTTGCTGCTGTTGATGTTGGTAATGG
TAGTAGGAGCGATGGCAAAATAATCATCCCTGACGACAGTATGCGCCAAC
AGGGCAGAAGGTTCTCTTCCCACATTTTCTCCATCCCCTCCGTTTCCCTT
CTCTTCTTCTACTCGTGGACAAAAGACAATCACTTGGGGGTCTTCCTCCT
GCTGCTGGTGCTGCTGCAGCTGCAGCCGCTCCTCCACACACGAGGGCGAC
CGGCGACGGGCTAGGAATGAGATGAAGGAGGAAGAGGAGGAATAAGAGGG
AGAGGAGGAGGGGGGGGAGGAGAGGGTAGGGGGTGAGGCGATCTTGGAGG
GAGACTTGTGGGATGGGGAGGGACAATGCTGCTCCTGCAATGGTGGCTGT
GGTGGTTGCGGCGGCGAGGCAAGTTTTAGAGGTCCAAGAAGAGGTGGCGA
TGGTGGAATTGTCGCTGCTGCTGAGGGTTTGGCTGCTGTCCCTTCCATAG
GTTGGCCTCCATTCGGCAGGTGGATCGTGGTCCGGGCCATGTTTTTTTGG
GCGGGATCTTGCAAACTCGGTTAAAATTCAATACGTTCGGACCAGAATTT
GGACCAAAGCCCGCACCGCCCGGGGCTTAAGTGCGATGGGGCGCGATGCC
CCTGCTATAGCACT

protein sequence of jgi.p|Nanoce1779_2|593156

>mRNA_5925-protein ID=mRNA_5925-protein|Name=jgi.p|Nanoce1779_2|593156|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MKTDSGVNRIPSSSPSFSYPSSRSLTSLSSSFFSFVSVVVFFFFPSPSFS
SSTSGSPFPLMLEAGSIKRISKDELDTIPLVSLSSLLSSFLPSSPWLQIN
STTAANSPPFSFPASSPTGKKTEGESGASIDSPPTGNTSFLSLLPLLLPL
LQLLAVMVVVVFLMQLLLLLLLLMLVMVVGAMAK*

mRNA from alignment at scaffold_14:86342..87505+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5925 ID=mRNA_5925|Name=jgi.p|Nanoce1779_2|593156|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at scaffold_14:86342..87505+ (Nannochloropsis oceanica)
CCCCCCCTACAGGGTGTTATGAAGACAGACTCGGGAGTAAATCGCATCCC
CTCTTCTTCCCCTTCCTTCTCGTATCCCTCTTCTCGTTCCCTCACCTCGT
TGTCCTCGTCCTTCTTTTCCTTCGTTTCCGTCGTCGTCTTCTTCTTCTTC
CCCTCCCCCTCCTTCTCCTCCTCTACTTCCGGCTCCCCGTTCCCCCTCAT
GCTTGAAGCAGGCTCCATCAAAAGAATCTCAAAAGATGAATTGGACACTA
TCCCTCTCGTCTCTCTCTCTTCTCTCCTTTCCTCTTTCCTTCCTTCCTCC
CCTTGGCTACAAATCAATTCCACCACCGCCGCTAACTCCCCCCCTTTTTC
CTTCCCTGCCTCCTCACCTACCGGGAAAAAAACCGAGGGCGAGAGTGGGG
CGAGCATAGACTCTCCTCCGACGGGAAATACCTCATTTTTATCGCTATTG
CCACTGCTGCTACCGCTGCTGCAGCTGCTGGCGGTGATGGTGGTCGTGGT
GTTCCTAATGCAGCTGCTGCTGCTGTTGCTGCTGTTGATGTTGGTAATGG
TAGTAGGAGCGATGGCAAAATAATCATCCCTGACGACAGTATGCGCCAAC
AGGGCAGAAGGTTCTCTTCCCACATTTTCTCCATCCCCTCCGTTTCCCTT
CTCTTCTTCTACTCGTGGACAAAAGACAATCACTTGGGGGTCTTCCTCCT
GCTGCTGGTGCTGCTGCAGCTGCAGCCGCTCCTCCACACACGAGGGCGAC
CGGCGACGGGCTAGGAATGAGATGAAGGAGGAAGAGGAGGAATAAGAGGG
AGAGGAGGAGGGGGGGGAGGAGAGGGTAGGGGGTGAGGCGATCTTGGAGG
GAGACTTGTGGGATGGGGAGGGACAATGCTGCTCCTGCAATGGTGGCTGT
GGTGGTTGCGGCGGCGAGGCAAGTTTTAGAGGTCCAAGAAGAGGTGGCGA
TGGTGGAATTGTCGCTGCTGCTGAGGGTTTGGCTGCTGTCCCTTCCATAG
GTTGGCCTCCATTCGGCAGGTGGATCGTGGTCCGGGCCATGTTTTTTTGG
GCGGGATCTTGCAAACTCGGTTAAAATTCAATACGTTCGGACCAGAATTT
GGACCAAAGCCCGCACCGCCCGGGGCTTAAGTGCGATGGGGCGCGATGCC
CCTGCTATAGCACT

Coding sequence (CDS) from alignment at scaffold_14:86342..87505+

>mRNA_5925 ID=mRNA_5925|Name=jgi.p|Nanoce1779_2|593156|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_14:86342..87505+ (Nannochloropsis oceanica)
ATGAAGACAGACTCGGGAGTAAATCGCATCCCCTCTTCTTCCCCTTCCTT
CTCGTATCCCTCTTCTCGTTCCCTCACCTCGTTGTCCTCGTCCTTCTTTT
CCTTCGTTTCCGTCGTCGTCTTCTTCTTCTTCCCCTCCCCCTCCTTCTCC
TCCTCTACTTCCGGCTCCCCGTTCCCCCTCATGCTTGAAGCAGGCTCCAT
CAAAAGAATCTCAAAAGATGAATTGGACACTATCCCTCTCGTCTCTCTCT
CTTCTCTCCTTTCCTCTTTCCTTCCTTCCTCCCCTTGGCTACAAATCAAT
TCCACCACCGCCGCTAACTCCCCCCCTTTTTCCTTCCCTGCCTCCTCACC
TACCGGGAAAAAAACCGAGGGCGAGAGTGGGGCGAGCATAGACTCTCCTC
CGACGGGAAATACCTCATTTTTATCGCTATTGCCACTGCTGCTACCGCTG
CTGCAGCTGCTGGCGGTGATGGTGGTCGTGGTGTTCCTAATGCAGCTGCT
GCTGCTGTTGCTGCTGTTGATGTTGGTAATGGTAGTAGGAGCGATGGCAA
AATAA

Synonyms

Publications