jgi.p|Nanoce1779_2|577869, mRNA_592 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577869
Unique NamemRNA_592
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length811
Alignment locationscaffold_3:1470930..1471740 +

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Properties
Property NameValue
TranscriptId577955
TrackFilteredModels2
ProteinId577869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1470930..1471740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577869gene_592Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577869mRNA_592-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_592CDS_592Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_592 ID=mRNA_592|Name=jgi.p|Nanoce1779_2|577869|organism=Nannochloropsis oceanica|type=mRNA|length=811bp
CAATACCGAGAAACTGCCCATCGTGCACACACTCCCCATTGTCGCGCATA
AGGCAAACTTGGCAGGTCGAAACACAATCGCCGGCAAGCCGACAAAGAAG
GCCAACAAATAAAACAACACGCCTAACAACAATAGACCTACAAACCCCCG
TAACCGCGCGCCGTAATTCAGTGTCGTCTCGACCGTTGCCTTGGCGCCTC
CCACCAGACCAGGGTTCCCCTCACCGTCCCCGCGGATGCTGGTAATGAAT
CGACCCGCAAATCCTGAGAATTGATCGTGTGCGTCCCCCATGCCGTGGCC
GTGGAAAAACCGCTCTACGTTGCCAAGCAGGCCCATCTCGACGTCATCGT
TTGCTGGGAGGGTGGGGTGTGTTTGTGGAGGTCAACAATAGGGAAATAAG
GGATTAAGGGCAGTTAAGAAGACGGAATACAGCAAATTTATAACAGATAC
AGCGGAGATCTAATTTATGTAGAGGGAAAGGCAGGCAGTGAAGGGAGGAA
GTGCAGGGAGGATGACGGGACAGAGGGAAGGAGGGTCTTGCAGAGACGCC
TACAACTAACTGTAGGCCCCCGAAAATCGCATCATACTGGTGATGATTCA
CATGTACCTCCTGCCTGCTGTCGTTGTGCGTACTGCGCGTACCAATCCCC
AAAGGACTGATTTCCTGCTCCCGCTCCTGCTCCTGCGATTCCTGCCGCGT
GGTTGCTGCTTCCGCCTGAGCCTTTCATCCTCACGTGCATCCAAACCCCG
GCCACGAGAAGGGAAACAGATGCAAGAGATGATGCTGGTGTGGACAAGTC
TGTCGACCTGT
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protein sequence of jgi.p|Nanoce1779_2|577869

>mRNA_592-protein ID=mRNA_592-protein|Name=jgi.p|Nanoce1779_2|577869|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MIHMYLLPAVVVRTARTNPQRTDFLLPLLLLRFLPRGCCFRLSLSSSRAS
KPRPREGKQMQEMMLVWTSLSTC
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mRNA from alignment at scaffold_3:1470930..1471740+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_592 ID=mRNA_592|Name=jgi.p|Nanoce1779_2|577869|organism=Nannochloropsis oceanica|type=mRNA|length=811bp|location=Sequence derived from alignment at scaffold_3:1470930..1471740+ (Nannochloropsis oceanica)
CAATACCGAGAAACTGCCCATCGTGCACACACTCCCCATTGTCGCGCATA
AGGCAAACTTGGCAGGTCGAAACACAATCGCCGGCAAGCCGACAAAGAAG
GCCAACAAATAAAACAACACGCCTAACAACAATAGACCTACAAACCCCCG
TAACCGCGCGCCGTAATTCAGTGTCGTCTCGACCGTTGCCTTGGCGCCTC
CCACCAGACCAGGGTTCCCCTCACCGTCCCCGCGGATGCTGGTAATGAAT
CGACCCGCAAATCCTGAGAATTGATCGTGTGCGTCCCCCATGCCGTGGCC
GTGGAAAAACCGCTCTACGTTGCCAAGCAGGCCCATCTCGACGTCATCGT
TTGCTGGGAGGGTGGGGTGTGTTTGTGGAGGTCAACAATAGGGAAATAAG
GGATTAAGGGCAGTTAAGAAGACGGAATACAGCAAATTTATAACAGATAC
AGCGGAGATCTAATTTATGTAGAGGGAAAGGCAGGCAGTGAAGGGAGGAA
GTGCAGGGAGGATGACGGGACAGAGGGAAGGAGGGTCTTGCAGAGACGCC
TACAACTAACTGTAGGCCCCCGAAAATCGCATCATACTGGTGATGATTCA
CATGTACCTCCTGCCTGCTGTCGTTGTGCGTACTGCGCGTACCAATCCCC
AAAGGACTGATTTCCTGCTCCCGCTCCTGCTCCTGCGATTCCTGCCGCGT
GGTTGCTGCTTCCGCCTGAGCCTTTCATCCTCACGTGCATCCAAACCCCG
GCCACGAGAAGGGAAACAGATGCAAGAGATGATGCTGGTGTGGACAAGTC
TGTCGACCTGT
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Coding sequence (CDS) from alignment at scaffold_3:1470930..1471740+

>mRNA_592 ID=mRNA_592|Name=jgi.p|Nanoce1779_2|577869|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_3:1470930..1471740+ (Nannochloropsis oceanica)
ATGATTCACATGTACCTCCTGCCTGCTGTCGTTGTGCGTACTGCGCGTAC
CAATCCCCAAAGGACTGATTTCCTGCTCCCGCTCCTGCTCCTGCGATTCC
TGCCGCGTGGTTGCTGCTTCCGCCTGAGCCTTTCATCCTCACGTGCATCC
AAACCCCGGCCACGAGAAGGGAAACAGATGCAAGAGATGATGCTGGTGTG
GACAAGTCTGTCGACCTGT
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Synonyms
Publications