jgi.p|Nanoce1779_2|75659, mRNA_5919 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|75659
Unique NamemRNA_5919
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1367
Alignment locationscaffold_14:60739..62305 +

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Properties
Property NameValue
TranscriptId75745
TrackFilteredModels2
ProteinId75659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:60739..62305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75659gene_5919Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75659mRNA_5919-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5919CDS_5919Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5919 ID=mRNA_5919|Name=jgi.p|Nanoce1779_2|75659|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
AGTTTTACGAGTCGATAAAGCATCGAGCAACGCGCAACGGGGCGGCACTT
TTGTCCGTAAAGCCTCCACCGGTTGGCCATTCACATTCTATTGATTGTCG
ATGGCGTGGTAGTTAGCGTAAATTCTCGGATTTGATGCCGCTGTGTTGTC
ATCCTCACAATCACAGTCATTCAAACGCACGTACGACAATCCTCACCCAC
TCCAACTCCCTCATCCTGGTGAATCAGGTCGTACGCAGCAGCACCACAAG
ACGCTCGGTACAAGGCCATACCTTTCGAACAGGAGGATGGGTTCGTCCCT
CCCCTCCCTTCCACGCCTCTGCTCTCGCTCTGTCATACTCCCCAGGGGCC
TCCTCGTGCTGCTAGTGCTCCTCCTCTTAAGCCGGCACGCCATCGTCACT
CCCCATGCCTTTGTCGTCGTACCACCCTTTCAAGATTACCAGCACCAGCG
GCGGCACCCTCATCACCAGCCGCAGGAGCACAAGCGGGAGGAGCGGCAAA
GGCAGAGAAGGTCCACGACGACAACCTCAATGCGACTGCTCCTCCTTCCC
TCCCTCTCCACGCACCGGACGCTCTTGAAAAAGGTGCCCCTCCAACCGCG
TGCCGCCGCTGCCACGACAAGCACGACCAGCGGTACGGTGAGCGAGGGCA
TTGGTGGAGAGGGCAGTGGGGCCGTCAGGGGAGGCAGCAACAGCAAGAGC
AGCAATCCATTTAACAGCAAGGGCAGCAACCCAATCACTGCCTTTCTGGC
AGGTTTGTTTTCGTCGGCTTCTCCTGCTGTTGAAACCAAACGGAAGGAGC
AACCGCAGTTCTTCGCGGCAACGGACCAGGAGGAAGACGAGGAGGAAGAC
GAGGAGGAGATCGAGGGGGAGGGTGAAGGTGGACGGGAGGAGAGGATGGG
GAATGGTGGAGAGGACAAGGAGGGGGAGCAGCGGCAACGGCAGCGGCAGC
GACCGGGCCATTCCATGCATGGCACCGTTCCTTCCCGCAATGTCTTCCAA
ACCTTGCGTGCGCCTTCGTGGACAAGCAGCAGCAGCAGCAGCAGCAGCCT
ATTTTTCTCCACCTTGTCGTCCTCGACGCTGCGCCGACGTGAGGAGGCAG
AGAGGATAAGGGAAGGGAAAGGCGAGGAGGAGGAAGAGGAGGAGGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGCAGCTATGG
ACAGCGTGGAGAAGACATTGACACTAGGTCTCGAAGACATTGACACCCCT
CCCTCCCTCCCTCCCTCCTCCTTCTCCTCCTCCTTCTCCTTGGCGGACGA
GGGAGATGAAGAGAAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACGCAC
CAATGATTGCGAGCGAG
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protein sequence of jgi.p|Nanoce1779_2|75659

>mRNA_5919-protein ID=mRNA_5919-protein|Name=jgi.p|Nanoce1779_2|75659|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MGSSLPSLPRLCSRSVILPRGLLVLLVLLLLSRHAIVTPHAFVVVPPFQD
YQHQRRHPHHQPQEHKREERQRQRRSTTTTSMRLLLLPSLSTHRTLLKKV
PLQPRAAAATTSTTSGTVSEGIGGEGSGAVRGGSNSKSSNPFNSKGSNPI
TAFLAGLFSSASPAVETKRKEQPQFFAATDQEEDEEEDEEEIEGEGEGGR
EERMGNGGEDKEGEQRQRQRQRPGHSMHGTVPSRNVFQTLRAPSWTSSSS
SSSSLFFSTLSSSTLRRREEAERIREGKGEEEEEEEEGGGGGGGGGGGGG
RGSYGQRGEDIDTRSRRH*
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mRNA from alignment at scaffold_14:60739..62305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5919 ID=mRNA_5919|Name=jgi.p|Nanoce1779_2|75659|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp|location=Sequence derived from alignment at scaffold_14:60739..62305+ (Nannochloropsis oceanica)
AGTTTTACGAGTCGATAAAGCATCGAGCAACGCGCAACGGGGCGGCACTT
TTGTCCGTAAAGCCTCCACCGGTTGGCCATTCACATTCTATTGATTGTCG
ATGGCGTGGTAGTTAGCGTAAATTCTCGGATTTGATGCCGCTGTGTTGTC
ATCCTCACAATCACAGTCATTCAAACGCACGTACGACAATCCTCACCCAC
TCCAACTCCCTCATCCTGGTGAATCAGGTCGTACGCAGCAGCACCACAAG
ACGCTCGGTACAAGGCCATACCTTTCGAACAGGAGGATGGGTTCGTCCCT
CCCCTCCCTTCCACGCCTCTGCTCTCGCTCTGTCATACTCCCCAGGGGCC
TCCTCGTGCTGCTAGTGCTCCTCCTCTTAAGCCGGCACGCCATCGTCACT
CCCCATGCCTTTGTCGTCGTACCACCCTTTCAAGATTACCAGCACCAGCG
GCGGCACCCTCATCACCAGCCGCAGGAGCACAAGCGGGAGGAGCGGCAAA
GGCAGAGAAGGTCCACGACGACAACCTCAATGCGACTGCTCCTCCTTCCC
TCCCTCTCCACGCACCGGACGCTCTTGAAAAAGGTGCCCCTCCAACCGCG
TGCCGCCGCTGCCACGACAAGCACGACCAGCGGTACGGTGAGCGAGGGCA
TTGGTGGAGAGGGCAGTGGGGCCGTCAGGGGAGGCAGCAACAGCAAGAGC
AGCAATCCATTTAACAGCAAGGGCAGCAACCCAATCACTGCCTTTCTGGC
AGGTTTGTTTTCGTCGGCTTCTCCTGCTGTTGAAACCAAACGGAAGGAGC
AACCGCAGTTCTTCGCGGCAACGGACCAGGAGGAAGACGAGGAGGAAGAC
GAGGAGGAGATCGAGGGGGAGGGTGAAGGTGGACGGGAGGAGAGGATGGG
GAATGGTGGAGAGGACAAGGAGGGGGAGCAGCGGCAACGGCAGCGGCAGC
GACCGGGCCATTCCATGCATGGCACCGTTCCTTCCCGCAATGTCTTCCAA
ACCTTGCGTGCGCCTTCGTGGACAAGCAGCAGCAGCAGCAGCAGCAGCCT
ATTTTTCTCCACCTTGTCGTCCTCGACGCTGCGCCGACGTGAGGAGGCAG
AGAGGATAAGGGAAGGGAAAGGCGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGAGGAAGAAGAAGAAAGCTATCCACATCCAGTCAGGGAGGAGGG
GAAGGGAGTAGACAATGTTTCAGAGCTGGCGGGCAAACCCGTCGCATCCT
CGCACGGAGGTAGCAGCAGTGGCGGCAACGACAGCGATGAAGGGAAGGAG
GAGGAAGAGGAGGATGAGGAGGTGATGGTGGTGGAGGAGGGGGAGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGCAGCTATGG
ACAGCGTGGAGAAGACATTGACACTAGGTCTCGAAGACATTGACACCCCT
CCCTCCCTCCCTCCCTCCTCCTTCTCCTCCTCCTTCTCCTTGGCGGACGA
GGGAGATGAAGAGAAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACGCAC
CAATGATTGCGAGCGAG
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Coding sequence (CDS) from alignment at scaffold_14:60739..62305+

>mRNA_5919 ID=mRNA_5919|Name=jgi.p|Nanoce1779_2|75659|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_14:60739..62305+ (Nannochloropsis oceanica)
ATGGGTTCGTCCCTCCCCTCCCTTCCACGCCTCTGCTCTCGCTCTGTCAT
ACTCCCCAGGGGCCTCCTCGTGCTGCTAGTGCTCCTCCTCTTAAGCCGGC
ACGCCATCGTCACTCCCCATGCCTTTGTCGTCGTACCACCCTTTCAAGAT
TACCAGCACCAGCGGCGGCACCCTCATCACCAGCCGCAGGAGCACAAGCG
GGAGGAGCGGCAAAGGCAGAGAAGGTCCACGACGACAACCTCAATGCGAC
TGCTCCTCCTTCCCTCCCTCTCCACGCACCGGACGCTCTTGAAAAAGGTG
CCCCTCCAACCGCGTGCCGCCGCTGCCACGACAAGCACGACCAGCGGTAC
GGTGAGCGAGGGCATTGGTGGAGAGGGCAGTGGGGCCGTCAGGGGAGGCA
GCAACAGCAAGAGCAGCAATCCATTTAACAGCAAGGGCAGCAACCCAATC
ACTGCCTTTCTGGCAGGTTTGTTTTCGTCGGCTTCTCCTGCTGTTGAAAC
CAAACGGAAGGAGCAACCGCAGTTCTTCGCGGCAACGGACCAGGAGGAAG
ACGAGGAGGAAGACGAGGAGGAGATCGAGGGGGAGGGTGAAGGTGGACGG
GAGGAGAGGATGGGGAATGGTGGAGAGGACAAGGAGGGGGAGCAGCGGCA
ACGGCAGCGGCAGCGACCGGGCCATTCCATGCATGGCACCGTTCCTTCCC
GCAATGTCTTCCAAACCTTGCGTGCGCCTTCGTGGACAAGCAGCAGCAGC
AGCAGCAGCAGCCTATTTTTCTCCACCTTGTCGTCCTCGACGCTGCGCCG
ACGTGAGGAGGCAGAGAGGATAAGGGAAGGGAAAGGCGAGGAGGAGGAAG
AGGAGGAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
AGAGGCAGCTATGGACAGCGTGGAGAAGACATTGACACTAGGTCTCGAAG
ACATTGAATGGGTTCGTCCCTCCCCTCCCTTCCACGCCTCTGCTCTCGCT
CTGTCATACTCCCCAGGGGCCTCCTCGTGCTGCTAGTGCTCCTCCTCTTA
AGCCGGCACGCCATCGTCACTCCCCATGCCTTTGTCGTCGTACCACCCTT
TCAAGATTACCAGCACCAGCGGCGGCACCCTCATCACCAGCCGCAGGAGC
ACAAGCGGGAGGAGCGGCAAAGGCAGAGAAGGTCCACGACGACAACCTCA
ATGCGACTGCTCCTCCTTCCCTCCCTCTCCACGCACCGGACGCTCTTGAA
AAAGGTGCCCCTCCAACCGCGTGCCGCCGCTGCCACGACAAGCACGACCA
GCGGTACGGTGAGCGAGGGCATTGGTGGAGAGGGCAGTGGGGCCGTCAGG
GGAGGCAGCAACAGCAAGAGCAGCAATCCATTTAACAGCAAGGGCAGCAA
CCCAATCACTGCCTTTCTGGCAGGTTTGTTTTCGTCGGCTTCTCCTGCTG
TTGAAACCAAACGGAAGGAGCAACCGCAGTTCTTCGCGGCAACGGACCAG
GAGGAAGACGAGGAGGAAGACGAGGAGGAGATCGAGGGGGAGGGTGAAGG
TGGACGGGAGGAGAGGATGGGGAATGGTGGAGAGGACAAGGAGGGGGAGC
AGCGGCAACGGCAGCGGCAGCGACCGGGCCATTCCATGCATGGCACCGTT
CCTTCCCGCAATGTCTTCCAAACCTTGCGTGCGCCTTCGTGGACAAGCAG
CAGCAGCAGCAGCAGCAGCCTATTTTTCTCCACCTTGTCGTCCTCGACGC
TGCGCCGACGTGAGGAGGCAGAGAGGATAAGGGAAGGGAAAGGCGAGGAG
GAGGAAGAGGAGGAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAGAGGCAGCTATGGACAGCGTGGAGAAGACATTGACACTAGGT
CTCGAAGACATTGA
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Synonyms
Publications