jgi.p|Nanoce1779_2|631173, mRNA_5918 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631173
Unique Name	mRNA_5918
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1761
Alignment location	scaffold_14:55746..57884 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631259
Track	FilteredModels2
ProteinId	631173

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:55746..57884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631173	gene_5918	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631173	mRNA_5918-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5918	CDS_5918	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:55746..57884+
coding sequence from alignment at scaffold_14:55746..57884+

mRNA sequence

>mRNA_5918 ID=mRNA_5918|Name=jgi.p|Nanoce1779_2|631173|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp
CAGAGGAGCCACAGACAGGCTAGCCGGCGTCCTTTCCGCCTCCGCCAACC
GTACCGCTGAGATAGAGCGCTAGGAATTTTTCGAATCGGGGTGAAGGTGC
CAAACCAGCGCGCAAGCGAGCAAAGATGAGCTCAGGGTTTTTCCGAGGGA
CGACCGCGGACCAGGATGCCCGCTTTGGGAACGCCGAGAAACGCCTCATG
AAGAAGATGAAATTTGCCAGTATCTTATCGGAGAAGGTGGACCTCCGCAA
GGTGAACATGGATGTGATCAAGCGATGGATTACTGATCAGCTCATTGATT
TTTTGGGGTTCGAGGAGGAGGTGACCATTGGGCTTGTTATTAACTATTTG
GAGAGTGATACGGATGCCAAAAAGCTGCAGTTGCAATGCACGGAATTTAT
CGGTAAGAATAAGGCGTCCCGATTCGTGGCTGAGCTATGGGCGCTATTGT
TGGATGCACAGGACAATCCGTCGGGGATTCCGTCGTGCTTTATCGAAGCG
AAGAAAAAGGAGCTGGCCGAGAGGAGCGAGAGGGACAAGCAGCAGCAGCA
GCATCAGCAGCAGCAACGGGAGCAAGCGGCAGCGGCCTTGGAGGCGGCTC
GGGCGATCAGTGCGAAGAGACGGGAAGAGATGGAGGAAGGTGGGGAAGGA
GGGAGGCAGGGAAGGAGGGGAGGGAAGACGTCACGGTTTTCGGCGCCGAT
GGTGGAGGAAGAGGGTGAAGGAGGAGGAGGGATGCCAGCGGGATTATCCC
CGGCGGTCCAAGCTACCATTGCTGGCGCCCGTGCAGCAGCAGCAGCAGCA
GCAGGAGGAGGAGGAGGAGGGAAGGAGGCAGGGAGTGATCGAGGAAGGGA
GCGACGTCGCTCTCCCTCCCGGTCTCGCTCGCATTCGTACGGGCGGAGGC
AAGGAGGAAGGGAGGGAGGGAGGGACCGGAGGGACAGAGGAGGGGGCTAT
CACCGTCGCCGTTCCCTCTCCCGATCTCTTTCCCCTCGCCCCTCGTACCG
TCGACATGGGCGCAGCCCTTCCCATTCTCCTTCTTCTCCGGTCTCCTGGT
ATGGGAGTGGAAGGAGGGAGGAGCGATCCGCTCGACGAAGGAGTAGGAGT
CGGAGTCGAGGGAGGGATCGAGGAAGAGCAGGAGGAGGAGCAGGAGGAGG
AGGAGGGGAAGGGAGGGGACGACGCGGGCGCTCTCCAACACCCCCACGCC
GGCAGCGAGATCAGAAAGATGGGGAGAGGAAGAGGGGGGAGGATGGGCGA
AAGCGTGAAAGGGAAATGAAGACGGGACGCGAGGAAGAGGATGGAGGAAG
GAGGATGAGAAGAAGTAAAGGAGGGAAGGAGGAGGAGGAGGAGGATGCCC
GGAAGGAAAGGAAGCGGCTAAAGAAGGAGAAGAAGGAGAAGAAGAAGGAG
AAGAAGGAGAAGAGGAAAGAGAAGGGGGAGAAGAAGCACCATAGCGAAAG
AGGTAGGGAGATTGAAGGCGAAAAGGAGGAGGGGAAGGCCGCCGCGGGGT
CAGAGGACGACACGGAGGGACCCCGGTCTCCGCCGCCGACTCCTGTCGAG
GAGTTGGAAGTGAAAGATGTGGCGGTCGAAGGGACGGGGGAAGAGGAGTA
AAAAAATACACTTCAAAAGAAGAAGACTCTTCCTTTTCTTTTCCTGAAAG
AGAATGCTGCAGGCGAGGGTTAAGACCCTACTATGCCCCTATCGAAACAC
GCCAAAAATTAAGCCAACAAAATAACAAAAGAAAACAAAGGCAACCAAAA
TGCGACTGAAA

protein sequence of jgi.p|Nanoce1779_2|631173

>mRNA_5918-protein ID=mRNA_5918-protein|Name=jgi.p|Nanoce1779_2|631173|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKR
WITDQLIDFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASRF
VAELWALLLDAQDNPSGIPSCFIEAKKKELAERSERDKQQQQHQQQQREQ
AAAALEAARAISAKRREEMEEGGEGGRQGRRGGKTSRFSAPMVEEEGEGG
GGMPAGLSPAVQATIAGARAAAAAAAGGGGGGKEAGSDRGRERRRSPSRS
RSHSYGRRQGGREGGRDRRDRGGGYHRRRSLSRSLSPRPSYRRHGRSPSH
SPSSPVSWYGSGRREERSARRRSRSRSRGRDRGRAGGGAGGGGGEGRGRR
GRSPTPPRRQRDQKDGERKRGEDGRKREREMKTGREEEDGGRRMRRSKGG
KEEEEEDARKERKRLKKEKKEKKKEKKEKRKEKGEKKHHSERGREIEGEK
EEGKAAAGSEDDTEGPRSPPPTPVEELEVKDVAVEGTGEEE*

mRNA from alignment at scaffold_14:55746..57884+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5918 ID=mRNA_5918|Name=jgi.p|Nanoce1779_2|631173|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_14:55746..57884+ (Nannochloropsis oceanica)
CAGAGGAGCCACAGACAGGCTAGCCGGCGTCCTTTCCGCCTCCGCCAACC
GTACCGCTGAGATAGAGCGCTAGGAATTTTTCGAATCGGGGTGAAGGTGC
CAAACCAGCGCGCAAGCGAGCAAAGATGAGCTCAGGGTTTTTCCGAGGGA
CGACCGCGGACCAGGATGCCCGCTTTGGGAACGCCGAGAAACGCCTCATG
AAGAAGATGAAATTTGCCAGTGTACGTATAGAGAGGGCGAGGAGGGAGGA
AGGGGAATGAAATTGGTGGTGGTCAGTCAGCTCCTGACGACGACTGCGTA
ACTCACCCGTCCCTTCCCTCCCTTCCCTTTCTTCCTTTTCCCCCTCCCTC
CTAAGATCTTATCGGAGAAGGTGGACCTCCGCAAGGTGAACATGGATGTG
ATCAAGCGATGGATTACTGATCAGCTCATTGATTTTTTGGGGTTCGAGGA
GGAGGTGACCATTGGGCTTGTTATTAACTATTTGGAGAGTGTGAGTGCAG
GAGGGAGGGAGGGAGGGAGGGAGGAAGAAAGGGAGGGAGGGAGGGAGGAA
TAAAGGGAGGGATGGCATTCATACAGGTATACATAACACGAGTTTCTTCC
TCCCTTGGTGTAATGGGATGCAGCGCAGCCATCTGATACCTCGTCGCTCG
CTCTCAACAGTCGCATCTTACCCCCCCTCCCTCCCTCTCTCCCTCCTTCC
CTCCCTCCCTCCCTCCCTCCCATTCCATCCCCAGGATACGGATGCCAAAA
AGCTGCAGTTGCAATGCACGGAATTTATCGGTAAGAATAAGGCGTCCCGA
TTCGTGGCTGAGCTATGGGCGCTATTGTTGGATGCACAGGACAATCCGTC
GGGGATTCCGTCGTGCTTTATCGAAGCGAAGAAAAAGGAGCTGGCCGAGA
GGAGCGAGAGGGACAAGCAGCAGCAGCAGCATCAGCAGCAGCAACGGGAG
CAAGCGGCAGCGGCCTTGGAGGCGGCTCGGGCGATCAGTGCGAAGAGACG
GGAAGAGATGGAGGAAGGTGGGGAAGGAGGGAGGCAGGGAAGGAGGGGAG
GGAAGACGTCACGGTTTTCGGCGCCGATGGTGGAGGAAGAGGGTGAAGGA
GGAGGAGGGATGCCAGCGGGATTATCCCCGGCGGTCCAAGCTACCATTGC
TGGCGCCCGTGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGGA
AGGAGGCAGGGAGTGATCGAGGAAGGGAGCGACGTCGCTCTCCCTCCCGG
TCTCGCTCGCATTCGTACGGGCGGAGGCAAGGAGGAAGGGAGGGAGGGAG
GGACCGGAGGGACAGAGGAGGGGGCTATCACCGTCGCCGTTCCCTCTCCC
GATCTCTTTCCCCTCGCCCCTCGTACCGTCGACATGGGCGCAGCCCTTCC
CATTCTCCTTCTTCTCCGGTCTCCTGGTATGGGAGTGGAAGGAGGGAGGA
GCGATCCGCTCGACGAAGGAGTAGGAGTCGGAGTCGAGGGAGGGATCGAG
GAAGAGCAGGAGGAGGAGCAGGAGGAGGAGGAGGGGAAGGGAGGGGACGA
CGCGGGCGCTCTCCAACACCCCCACGCCGGCAGCGAGATCAGAAAGATGG
GGAGAGGAAGAGGGGGGAGGATGGGCGAAAGCGTGAAAGGGAAATGAAGA
CGGGACGCGAGGAAGAGGATGGAGGAAGGAGGATGAGAAGAAGTAAAGGA
GGGAAGGAGGAGGAGGAGGAGGATGCCCGGAAGGAAAGGAAGCGGCTAAA
GAAGGAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGAAGAGGAAAGAGA
AGGGGGAGAAGAAGCACCATAGCGAAAGAGGTAGGGAGATTGAAGGCGAA
AAGGAGGAGGGGAAGGCCGCCGCGGGGTCAGAGGACGACACGGAGGGACC
CCGGTCTCCGCCGCCGACTCCTGTCGAGGAGTTGGAAGTGAAAGATGTGG
CGGTCGAAGGGACGGGGGAAGAGGAGTAAAAAAATACACTTCAAAAGAAG
AAGACTCTTCCTTTTCTTTTCCTGAAAGAGAATGCTGCAGGCGAGGGTTA
AGACCCTACTATGCCCCTATCGAAACACGCCAAAAATTAAGCCAACAAAA
TAACAAAAGAAAACAAAGGCAACCAAAATGCGACTGAAA

Coding sequence (CDS) from alignment at scaffold_14:55746..57884+

>mRNA_5918 ID=mRNA_5918|Name=jgi.p|Nanoce1779_2|631173|organism=Nannochloropsis oceanica|type=CDS|length=4428bp|location=Sequence derived from alignment at scaffold_14:55746..57884+ (Nannochloropsis oceanica)
ATGAGCTCAGGGTTTTTCCGAGGGACGACCGCGGACCAGGATGCCCGCTT
TGGGAACGCCGAGAAACGCCTCATGAAGAAGATGAAATTTGCCAGTATCT
TATCGGAGAAGGTGGACCTCCGCAAGGTGAACATGGATGTGATCAAGCGA
TGGATTACTGATCAGCTCATTGATTTTTTGGGGTTCGAGGAGGAGGTGAC
CATTGGGCTTGTTATTAACTATTTGGAGAGTGATACGGATGCCAAAAAGC
TGCAGTTGCAATGCACGGAATTTATCGGTAAGAATAAGGCGTCCCGATTC
GTGGCTGAGCTATGGGCGCTATTGTTGGATGCACAGGACAATCCGTCGGG
GATTCCGTCGTGCTTTATCGAAGCGAAGAAAAAGGAGCTGGCCGAGAGGA
GCGAGAGGGACAAGCAGCAGCAGCAGCATCAGCAGCAGCAACGGGAGCAA
GCGGCAGCGGCCTTGGAGGCGGCTCGGGCGATCAGTGCGAAGAGACGGGA
AGAGATGGAGGAAGGTGGGGAAGGAGGGAGGCAGGGAAGGAGGGGAGGGA
AGACGTCACGGTTTTCGGCGCCGATGGTGGAGGAAGAGGGTGAAGGAGGA
GGAGGGATGCCAGCGGGATTATCCCCGGCGGTCCAAGCTACCATTGCTGG
CGCCCGTGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGGAAGG
AGGCAGGGAGTGATCGAGGAAGGGAGCGACGTCGCTCTCCCTCCCGGTCT
CGCTCGCATTCGTACGGGCGGAGGCAAGGAGGAAGGGAGGGAGGGAGGGA
CCGGAGGGACAGAGGAGGGGGCTATCACCGTCGCCGTTCCCTCTCCCGAT
CTCTTTCCCCTCGCCCCTCGTACCGTCGACATGGGCGCAGCCCTTCCCAT
TCTCCTTCTTCTCCGGTCTCCTGGTATGGGAGTGGAAGGAGGGAGGAGCG
ATCCGCTCGACGAAGGAGTAGGAGTCGGAGTCGAGGGAGGGATCGAGGAA
GAGCAGGAGGAGGAGCAGGAGGAGGAGGAGGGGAAGGGAGGGGACGACGC
GGGCGCTCTCCAACACCCCCACGCCGGCAGCGAGATCAGAAAGATGGGGA
GAGGAAGAGGGGGGAGGATGGGCGAAAGCGTGAAAGGGAAATGAAGACGG
GACGCGAGGAAGAGGATGGAGGAAGGAGGATGAGAAGAAGTAAAGGAGGG
AAGGAGGAGGAGGAGGAGGATGCCCGGAAGGAAAGGAAGCGGCTAAAGAA
GGAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGAAGAGGAAAGAGAAGG
GGGAGAAGAAGCACCATAGCGAAAGAGGTAGGGAGATTGAAGGCGAAAAG
GAGGAGGGGAAGGCCGCCGCGGGGTCAGAGGACGACACGGAGGGACCCCG
GTCTCCGCCGCCGACTCCTGTCGAGGAGTTGGAAGTGAAAGATGTGGCGG
TCGAAGGGACGGGGGAAGAGGAGTAAATGAGCTCAGGGTTTTTCCGAGGG
ACGACCGCGGACCAGGATGCCCGCTTTGGGAACGCCGAGAAACGCCTCAT
GAAGAAGATGAAATTTGCCAGTATCTTATCGGAGAAGGTGGACCTCCGCA
AGGTGAACATGGATGTGATCAAGCGATGGATTACTGATCAGCTCATTGAT
TTTTTGGGGTTCGAGGAGGAGGTGACCATTGGGCTTGTTATTAACTATTT
GGAGAGTGATACGGATGCCAAAAAGCTGCAGTTGCAATGCACGGAATTTA
TCGGTAAGAATAAGGCGTCCCGATTCGTGGCTGAGCTATGGGCGCTATTG
TTGGATGCACAGGACAATCCGTCGGGGATTCCGTCGTGCTTTATCGAAGC
GAAGAAAAAGGAGCTGGCCGAGAGGAGCGAGAGGGACAAGCAGCAGCAGC
AGCATCAGCAGCAGCAACGGGAGCAAGCGGCAGCGGCCTTGGAGGCGGCT
CGGGCGATCAGTGCGAAGAGACGGGAAGAGATGGAGGAAGGTGGGGAAGG
AGGGAGGCAGGGAAGGAGGGGAGGGAAGACGTCACGGTTTTCGGCGCCGA
TGGTGGAGGAAGAGGGTGAAGGAGGAGGAGGGATGCCAGCGGGATTATCC
CCGGCGGTCCAAGCTACCATTGCTGGCGCCCGTGCAGCAGCAGCAGCAGC
AGCAGGAGGAGGAGGAGGAGGGAAGGAGGCAGGGAGTGATCGAGGAAGGG
AGCGACGTCGCTCTCCCTCCCGGTCTCGCTCGCATTCGTACGGGCGGAGG
CAAGGAGGAAGGGAGGGAGGGAGGGACCGGAGGGACAGAGGAGGGGGCTA
TCACCGTCGCCGTTCCCTCTCCCGATCTCTTTCCCCTCGCCCCTCGTACC
GTCGACATGGGCGCAGCCCTTCCCATTCTCCTTCTTCTCCGGTCTCCTGG
TATGGGAGTGGAAGGAGGGAGGAGCGATCCGCTCGACGAAGGAGTAGGAG
TCGGAGTCGAGGGAGGGATCGAGGAAGAGCAGGAGGAGGAGCAGGAGGAG
GAGGAGGGGAAGGGAGGGGACGACGCGGGCGCTCTCCAACACCCCCACGC
CGGCAGCGAGATCAGAAAGATGGGGAGAGGAAGAGGGGGGAGGATGGGCG
AAAGCGTGAAAGGGAAATGAAGACGGGACGCGAGGAAGAGGATGGAGGAA
GGAGGATGAGAAGAAGTAAAGGAGGGAAGGAGGAGGAGGAGGAGGATGCC
CGGAAGGAAAGGAAGCGGCTAAAGAAGGAGAAGAAGGAGAAGAAGAAGGA
GAAGAAGGAGAAGAGGAAAGAGAAGGGGGAGAAGAAGCACCATAGCGAAA
GAGGTAGGGAGATTGAAGGCGAAAAGGAGGAGGGGAAGGCCGCCGCGGGG
TCAGAGGACGACACGGAGGGACCCCGGTCTCCGCCGCCGACTCCTGTCGA
GGAGTTGGAAGTGAAAGATGTGGCGGTCGAAGGGACGGGGGAAGAGGAGT
AAATGAGCTCAGGGTTTTTCCGAGGGACGACCGCGGACCAGGATGCCCGC
TTTGGGAACGCCGAGAAACGCCTCATGAAGAAGATGAAATTTGCCAGTAT
CTTATCGGAGAAGGTGGACCTCCGCAAGGTGAACATGGATGTGATCAAGC
GATGGATTACTGATCAGCTCATTGATTTTTTGGGGTTCGAGGAGGAGGTG
ACCATTGGGCTTGTTATTAACTATTTGGAGAGTGATACGGATGCCAAAAA
GCTGCAGTTGCAATGCACGGAATTTATCGGTAAGAATAAGGCGTCCCGAT
TCGTGGCTGAGCTATGGGCGCTATTGTTGGATGCACAGGACAATCCGTCG
GGGATTCCGTCGTGCTTTATCGAAGCGAAGAAAAAGGAGCTGGCCGAGAG
GAGCGAGAGGGACAAGCAGCAGCAGCAGCATCAGCAGCAGCAACGGGAGC
AAGCGGCAGCGGCCTTGGAGGCGGCTCGGGCGATCAGTGCGAAGAGACGG
GAAGAGATGGAGGAAGGTGGGGAAGGAGGGAGGCAGGGAAGGAGGGGAGG
GAAGACGTCACGGTTTTCGGCGCCGATGGTGGAGGAAGAGGGTGAAGGAG
GAGGAGGGATGCCAGCGGGATTATCCCCGGCGGTCCAAGCTACCATTGCT
GGCGCCCGTGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGGAA
GGAGGCAGGGAGTGATCGAGGAAGGGAGCGACGTCGCTCTCCCTCCCGGT
CTCGCTCGCATTCGTACGGGCGGAGGCAAGGAGGAAGGGAGGGAGGGAGG
GACCGGAGGGACAGAGGAGGGGGCTATCACCGTCGCCGTTCCCTCTCCCG
ATCTCTTTCCCCTCGCCCCTCGTACCGTCGACATGGGCGCAGCCCTTCCC
ATTCTCCTTCTTCTCCGGTCTCCTGGTATGGGAGTGGAAGGAGGGAGGAG
CGATCCGCTCGACGAAGGAGTAGGAGTCGGAGTCGAGGGAGGGATCGAGG
AAGAGCAGGAGGAGGAGCAGGAGGAGGAGGAGGGGAAGGGAGGGGACGAC
GCGGGCGCTCTCCAACACCCCCACGCCGGCAGCGAGATCAGAAAGATGGG
GAGAGGAAGAGGGGGGAGGATGGGCGAAAGCGTGAAAGGGAAATGAAGAC
GGGACGCGAGGAAGAGGATGGAGGAAGGAGGATGAGAAGAAGTAAAGGAG
GGAAGGAGGAGGAGGAGGAGGATGCCCGGAAGGAAAGGAAGCGGCTAAAG
AAGGAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGAAGAGGAAAGAGAA
GGGGGAGAAGAAGCACCATAGCGAAAGAGGTAGGGAGATTGAAGGCGAAA
AGGAGGAGGGGAAGGCCGCCGCGGGGTCAGAGGACGACACGGAGGGACCC
CGGTCTCCGCCGCCGACTCCTGTCGAGGAGTTGGAAGTGAAAGATGTGGC
GGTCGAAGGGACGGGGGAAGAGGAGTAA

Synonyms

Publications