jgi.p|Nanoce1779_2|75553, mRNA_5917 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|75553
Unique NamemRNA_5917
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length913
Alignment locationscaffold_14:54552..55991 -

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Properties
Property NameValue
TranscriptId75639
TrackFilteredModels2
ProteinId75553
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:54552..55991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75553gene_5917Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75553mRNA_5917-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5917CDS_5917Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5917 ID=mRNA_5917|Name=jgi.p|Nanoce1779_2|75553|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
CCCTCCTCGCCCTCTCTATACGTACACTGGCAAATTTCATCTTCTTCATG
AGGCGTTTCTCGGCGTTCCCAAAGCGGGCATCCTGGTCCGCGGTCGTCCC
TCGGAAAAACCCTGAGCTCATCTTTGCTCGCTTGCGCGCTGGTTTGGCAC
CTTCACCCCGATTCGAAAAATTCCTAGCGCTCTATCTCAGCGGTACGGTT
GGCGGAGGCGGAAAGGACGCCGGCTAGCCTGTCTGTGGCTCCTCTGCAGG
TGGAGTTTGGGAAGGGAAAGGGGAGAGGGATAAGGAAAGAGCGAGGAAAG
CAGCGGTACCGGAAACGATCAAATCGTGGACAAGACGAGCCAGCTATCTT
GCCACTCTTGCCCTGTTTCGAAAATGAGGTTTTTGCAAACGACATGCTGC
ATTCTTCTGCTGGCTGAGGCGACCCTTGCCTTCGTCCCACCCTCCTCCGT
CTCCCCTCCCTCTTCGGCCACTGCTGCTGCGTCAGAAAGACCAAGCAGCA
GCATCATGCAGCAGCGAGCCACGGGAAGAAGAGGAGATACATCCACCCCC
TCCTCCTCCACCACCTCTCCCTTCTCCCCGTCCCTCTACGCCTGGTCCCG
CGCTCTCACTCAGCAAATGGGCAAGGTCCTCCTTCCTTTGTCCATCCTCC
TCCCCACGGCCGGCGGCGTGGTGGCGTCCTTGGCACCTGGCCCTCCCCAG
GCAGCAATGGCGGCGGAACTGAATCTTCTCGAACAGCTCGAAACGCTGAA
CAAGCAGGTTGGAAGGAGAAGAGGAGGGAGGGAAGGAGGGAGGGAGGAAG
TGAGGGAGGAATGGTGGGCTGAACTAGGCTACATATCCGGACTGCGGGAT
GGTTGAGCTCAACCTCTTCTTCCCTCCCTCCCTCCTTTCTTCCTTCCCCC
CCTCCATCCCTCT
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protein sequence of jgi.p|Nanoce1779_2|75553

>mRNA_5917-protein ID=mRNA_5917-protein|Name=jgi.p|Nanoce1779_2|75553|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MRFLQTTCCILLLAEATLAFVPPSSVSPPSSATAAASERPSSSIMQQRAT
GRRGDTSTPSSSTTSPFSPSLYAWSRALTQQMGKVLLPLSILLPTAGGVV
ASLAPGPPQAAMAAELNLLEQLETLNKQVGRRRGGREGGREEVREEWWAE
LGYISGLRDG*
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mRNA from alignment at scaffold_14:54552..55991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5917 ID=mRNA_5917|Name=jgi.p|Nanoce1779_2|75553|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at scaffold_14:54552..55991- (Nannochloropsis oceanica)
CCCTCCTCGCCCTCTCTATACGTACACTGGCAAATTTCATCTTCTTCATG
AGGCGTTTCTCGGCGTTCCCAAAGCGGGCATCCTGGTCCGCGGTCGTCCC
TCGGAAAAACCCTGAGCTCATCTTTGCTCGCTTGCGCGCTGGTTTGGCAC
CTTCACCCCGATTCGAAAAATTCCTAGCGCTCTATCTCAGCGGTACGGTT
GGCGGAGGCGGAAAGGACGCCGGCTAGCCTGTCTGTGGCTCCTCTGCAGG
TGGAGTTTGGGAAGGGAAAGGGGAGAGGGATAAGGAAAGAGCGAGGAAAG
CAGCGGTACCGGAAACGATCAAATCGTGGACAAGACGAGCCAGTAAGTCC
TCATCCACGCCGAACAATGGCAAAACACTCCAGGTGACGAGGTGGAGGAG
GCAAAGACGACAACTCTCCGGTCGCAGCGTCGCTGGTTTCTCGCCCATCC
ACGACCCTGCGCGAGGTTGCCTTTCGGATCATTCGTATAACGCTCCCTTG
TACTCCTAATTGTTGCCTCACCACGACATCAAGTAACACGCGCAGCATCC
ACACACCACTCTTCACCTCTTTACATCCTCTCATACCAAGTAGCATGCCC
TCCTCTGGTCTAGGCCGCGTAATATTTCAGTGTTCCTTCAGCCTTAGCCT
CCCCACTCCATCTCGGGACACCTGCAACATGGGACAAGAAACGAATGCAG
CACGCTTATTTTATCATGCACTGGCTTACCAATCGTTTCCTTCCTTGCTT
TCGACAGGCTATCTTGCCACTCTTGCCCTGTTTCGAAAATGAGGTTTTTG
CAAACGACATGCTGCATTCTTCTGCTGGCTGAGGCGACCCTTGCCTTCGT
CCCACCCTCCTCCGTCTCCCCTCCCTCTTCGGCCACTGCTGCTGCGTCAG
AAAGACCAAGCAGCAGCATCATGCAGGTAAATACACTTATCTTGTTTTGA
GGTTCTCTCGTTTCCTCTTTCTCCGTCTATACCTTACCTTTTCTTCTCGC
CCTCCTCACCTCCTGTTGCCCATCCCTCTCCCCCCCAGCAGCGAGCCACG
GGAAGAAGAGGAGATACATCCACCCCCTCCTCCTCCACCACCTCTCCCTT
CTCCCCGTCCCTCTACGCCTGGTCCCGCGCTCTCACTCAGCAAATGGGCA
AGGTCCTCCTTCCTTTGTCCATCCTCCTCCCCACGGCCGGCGGCGTGGTG
GCGTCCTTGGCACCTGGCCCTCCCCAGGCAGCAATGGCGGCGGAACTGAA
TCTTCTCGAACAGCTCGAAACGCTGAACAAGCAGGTTGGAAGGAGAAGAG
GAGGGAGGGAAGGAGGGAGGGAGGAAGTGAGGGAGGAATGGTGGGCTGAA
CTAGGCTACATATCCGGACTGCGGGATGGTTGAGCTCAACCTCTTCTTCC
CTCCCTCCCTCCTTTCTTCCTTCCCCCCCTCCATCCCTCT
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Coding sequence (CDS) from alignment at scaffold_14:54552..55991-

>mRNA_5917 ID=mRNA_5917|Name=jgi.p|Nanoce1779_2|75553|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_14:54552..55991- (Nannochloropsis oceanica)
CAGCGAGCCACGGGAAGAAGAGGAGATACATCCACCCCCTCCTCCTCCAC
CACCTCTCCCTTCTCCCCGTCCCTCTACGCCTGGTCCCGCGCTCTCACTC
AGCAAATGGGCAAGGTCCTCCTTCCTTTGTCCATCCTCCTCCCCACGGCC
GGCGGCGTGGTGGCGTCCTTGGCACCTGGCCCTCCCCAGGCAGCAATGGC
GGCGGAACTGAATCTTCTCGAACAGCTCGAAACGCTGAACAAGCAGGTTG
GAAGGAGAAGAGGAGGGAGGGAAGGAGGGAGGGAGGAAGTGAGGGAGGAA
TGGTGGGCTGAACTAGGCTACATATCCGGACTGCGGGATGGTTGAATGAG
GTTTTTGCAAACGACATGCTGCATTCTTCTGCTGGCTGAGGCGACCCTTG
CCTTCGTCCCACCCTCCTCCGTCTCCCCTCCCTCTTCGGCCACTGCTGCT
GCGTCAGAAAGACCAAGCAGCAGCATCATGCAGCAGCGAGCCACGGGAAG
AAGAGGAGATACATCCACCCCCTCCTCCTCCACCACCTCTCCCTTCTCCC
CGTCCCTCTACGCCTGGTCCCGCGCTCTCACTCAGCAAATGGGCAAGGTC
CTCCTTCCTTTGTCCATCCTCCTCCCCACGGCCGGCGGCGTGGTGGCGTC
CTTGGCACCTGGCCCTCCCCAGGCAGCAATGGCGGCGGAACTGAATCTTC
TCGAACAGCTCGAAACGCTGAACAAGCAGGTTGGAAGGAGAAGAGGAGGG
AGGGAAGGAGGGAGGGAGGAAGTGAGGGAGGAATGGTGGGCTGAACTAGG
CTACATATCCGGACTGCGGGATGGTTGAATGAGGTTTTTGCAAACGACAT
GCTGCATTCTTCTGCTGGCTGAGGCGACCCTTGCCTTCGTCCCACCCTCC
TCCGTCTCCCCTCCCTCTTCGGCCACTGCTGCTGCGTCAGAAAGACCAAG
CAGCAGCATCATGCAG
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Synonyms
Publications