jgi.p|Nanoce1779_2|593113, mRNA_5916 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593113
Unique Name	mRNA_5916
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	850
Alignment location	scaffold_14:48938..50882 +

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Properties


Property Name	Value
TranscriptId	593199
Track	FilteredModels2
ProteinId	593113

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:48938..50882 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593113	gene_5916	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593113	mRNA_5916-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5916	CDS_5916	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:48938..50882+
coding sequence from alignment at scaffold_14:48938..50882+

mRNA sequence

>mRNA_5916 ID=mRNA_5916|Name=jgi.p|Nanoce1779_2|593113|organism=Nannochloropsis oceanica|type=mRNA|length=850bp
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGTTGCGGGCGTTGTCCATT
GCCTCCTGTGCTGATCTCTCCCCCGCCAGCGCCGCCGCCCTCTCGTCGCT
ACAGGGCATGTATAAACTAGACTTGCGAAGCCTTCCACATCTAAGGGACG
AAGATCTGCTCGCCCTCCTTGTGAAGAATGGAGGAACGCTCCAGGCCTTG
GCTGTGGGGGAGTGCAAACAGCTTACAGACATGGCCCTCGCTCATATTGC
CGACCACTGCGAGCGACTCACCGAGCTTGACCTTGGAGGGTTGCATCGGG
TGGACAGGGACGCGCTGCAGGCCCTCTTCCTCACCCCGTCCGCCGCCTCC
TCGCTTTCTTGTGTCTCCCTCGCCCGGAGTGCGGCATCAGATGAGGTGGT
GGAGGCATTGGCACAAACGGCCGGAACGTCACTGCGGCGGTTGGATTTGA
ATTCTAACGGGCGTCTGACAGACGCCTCTTTGGTGGCGCTCGTCCAGTGC
TGTGGGAGTAGCCTGGAGGAGGTGGATCTGTCCTTCTGCCGCAAGCTGAC
CAACGAGGGCCTGGGCTATCTGGCGGACTCGTGCACACGTTTGTCGAAAA
TAACCCTTTGGGGATGCACGCAGGTGACGGACGTTTTCCTGAAGGGTCAT
CGGCGTGATAGGCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGAT
AGCGCTGGAAGGAGGAGGAGGAGGAAAGTAGGAGGAGGAGGAAGAGGAGG
AGGGAAGTAGTAGAAGGAGGAGGAGGGGAGTAGGAAGGGTGGGAGGGAGT
GAAGGAGAGAAAAGGGAGAGGGAAGGAGGGTGGAAGGGACGATTGACATA

protein sequence of jgi.p|Nanoce1779_2|593113

>mRNA_5916-protein ID=mRNA_5916-protein|Name=jgi.p|Nanoce1779_2|593113|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MYKLDLRSLPHLRDEDLLALLVKNGGTLQALAVGECKQLTDMALAHIADH
CERLTELDLGGLHRVDRDALQALFLTPSAASSLSCVSLARSAASDEVVEA
LAQTAGTSLRRLDLNSNGRLTDASLVALVQCCGSSLEEVDLSFCRKLTNE
GLGYLADSCTRLSKITLWGCTQVTDVFLKGHRRDRLVVVGRGGSGSRIAL
EGGGGGK*

mRNA from alignment at scaffold_14:48938..50882+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5916 ID=mRNA_5916|Name=jgi.p|Nanoce1779_2|593113|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_14:48938..50882+ (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGTTGCGGGCGTTGTCCATT
GCCTCCTGTGCTGATGTATGTAGAGGAAGGGAGGGAGGGAGGGAGGGAGG
GAAAGAGGGAGAAAGGGAAGGAAGGGAGGCAGAAAAGAAGGTATATATCT
TCTCAGTCGCCACCTCATCTATCTTACCCTCCCACCTTCCCCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAGCTCT
CCCCCGCCAGCGCCGCCGCCCTCTCGTCGCTACAGGGCATGTATAAACTA
GACTTGCGAAGCCTTCCACATCTAAGGGACGAAGATCTGCTCGCCCTCCT
TGTGAAGAATGGAGGAACGCTCCAGGCCTTGGCTGTGGGGGAGTGCAAAC
AGCTTACAGACATGGTGGATGATTCCCCTTCCCTCCCTCCTTCCCTCCCT
CCTTCCCTCCCTCCTTCCCTCCCTCTTCCCCTCCCTGCCTTTCACTCTCT
CGGGCGCGTCTTCGTACAAGACTCAGTCCGTCCGTCCCTCCCTCCTTCCA
TCCCTCCCTCTCTTCCCCAGGCCCTCGCTCATATTGCCGACCACTGCGAG
CGACTCACCGAGCTTGACCTTGGAGGGTTGCATCGGGTGGACAGGGACGC
GCTGCAGGTGAGGAAGGGATCGAGGGAGGGAAGGAGAGGGAAATGGAGGA
AGGGAGCGAAGGAGGGAGGAAATGGAGGAAGGGAAGGAAGGAAGGAGTGT
GCGTCAACATAAGGAAAGAATCTCAGGTCGTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTTCCTCCTTCCCTCCTTCCCTCCTTCAGGCCCTCTTC
CTCACCCCGTCCGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAG
TGCGGCATCAGATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGT
CACTGCGGCGGTTGGATTTGAATTCTAACGGTAGGGAGGGAGGGAGGGAA
GGAGGGACGGGGGTAGGACAGGCAAGTCAGTCACTCACACATGGCCATAG
TTGCCACATTATTACATCTAATGTGTCCTCACACGGCTATAATTGCCACA
TTATTACATCTAATGTGTCCTCACACGGCCATAATTGCCACATTATTACA
TTTAAATTTCAATCACAGGGCGTCTGACAGACGCCTCTTTGGTGGCGCTC
GTCCAGTGCTGTGGGAGTAGCCTGGAGGAGGTGGATCTGTCCTTCTGCCG
CAAGGTGCGCCCTCACTCCATTTTCCCCTCTCTCTTTTTCTCCTTCCCTT
ATTCTTCCCCTCCTTTCCTTCTGTCCTTCTTTTTCTCGTTTCTTCATCCT
TCCTTCACTATCGTTTACGTATATCCATTAATTTAGTCCTCCCTCCCTCC
CGTCCTCCTTCCCCCCCTCAAAACCTTTCTTCCACTACCCGGCCCACTCA
CACCCTCCCTCCCATTCCCCCCCTCCTTTCCTCCCTCCTGCCCCCCTCCT
TCATTCCCTCGAAGCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTCG
TGCACACGTTTGTCGAAAATAACCCTTTGGGGATGCACGCAGGTAGGGAG
GGAGGGAGGGAAGGAGGGAGGGGAGGGGGTCTATGAGGAGAGGCCAAAAC
CTTAAGGATGCGGAAAGCATTGAACTCCCTCCCTCCCTTCCTCCCTCCCT
CCCCCCCTCCCTCCCTAGGTGACGGACGTTTTCCTGAAGGGTCATCGGCG
TGATAGGCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGATAGCGC
TGGAAGGAGGAGGAGGAGGAAAGTAGGAGGAGGAGGAAGAGGAGGAGGGA
AGTAGTAGAAGGAGGAGGAGGGGAGTAGGAAGGGTGGGAGGGAGTGAAGG
AGAGAAAAGGGAGAGGGAAGGAGGGTGGAAGGGACGATTGACATA

Coding sequence (CDS) from alignment at scaffold_14:48938..50882+

>mRNA_5916 ID=mRNA_5916|Name=jgi.p|Nanoce1779_2|593113|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_14:48938..50882+ (Nannochloropsis oceanica)
ATGTATAAACTAGACTTGCGAAGCCTTCCACATCTAAGGGACGAAGATCT
GCTCGCCCTCCTTGTGAAGAATGGAGGAACGCTCCAGGCCTTGGCTGTGG
GGGAGTGCAAACAGCTTACAGACATGGCCCTCGCTCATATTGCCGACCAC
TGCGAGCGACTCACCGAGCTTGACCTTGGAGGGTTGCATCGGGTGGACAG
GGACGCGCTGCAGGCCCTCTTCCTCACCCCGTCCGCCGCCTCCTCGCTTT
CTTGTGTCTCCCTCGCCCGGAGTGCGGCATCAGATGAGGTGGTGGAGGCA
TTGGCACAAACGGCCGGAACGTCACTGCGGCGGTTGGATTTGAATTCTAA
CGGGCGTCTGACAGACGCCTCTTTGGTGGCGCTCGTCCAGTGCTGTGGGA
GTAGCCTGGAGGAGGTGGATCTGTCCTTCTGCCGCAAGCTGACCAACGAG
GGCCTGGGCTATCTGGCGGACTCGTGCACACGTTTGTCGAAAATAACCCT
TTGGGGATGCACGCAGGTGACGGACGTTTTCCTGAAGGGTCATCGGCGTG
ATAGGCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGATAGCGCTG
GAAGGAGGAGGAGGAGGAAAGTAGATGTATAAACTAGACTTGCGAAGCCT
TCCACATCTAAGGGACGAAGATCTGCTCGCCCTCCTTGTGAAGAATGGAG
GAACGCTCCAGGCCTTGGCTGTGGGGGAGTGCAAACAGCTTACAGACATG
GCCCTCGCTCATATTGCCGACCACTGCGAGCGACTCACCGAGCTTGACCT
TGGAGGGTTGCATCGGGTGGACAGGGACGCGCTGCAGGCCCTCTTCCTCA
CCCCGTCCGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGTGCG
GCATCAGATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTCACT
GCGGCGGTTGGATTTGAATTCTAACGGGCGTCTGACAGACGCCTCTTTGG
TGGCGCTCGTCCAGTGCTGTGGGAGTAGCCTGGAGGAGGTGGATCTGTCC
TTCTGCCGCAAGCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTCGTG
CACACGTTTGTCGAAAATAACCCTTTGGGGATGCACGCAGGTGACGGACG
TTTTCCTGAAGGGTCATCGGCGTGATAGGCTGGTGGTGGTGGGTCGGGGG
GGGAGTGGAAGCCGGATAGCGCTGGAAGGAGGAGGAGGAGGAAAGTAGAT
GTATAAACTAGACTTGCGAAGCCTTCCACATCTAAGGGACGAAGATCTGC
TCGCCCTCCTTGTGAAGAATGGAGGAACGCTCCAGGCCTTGGCTGTGGGG
GAGTGCAAACAGCTTACAGACATGGCCCTCGCTCATATTGCCGACCACTG
CGAGCGACTCACCGAGCTTGACCTTGGAGGGTTGCATCGGGTGGACAGGG
ACGCGCTGCAGGCCCTCTTCCTCACCCCGTCCGCCGCCTCCTCGCTTTCT
TGTGTCTCCCTCGCCCGGAGTGCGGCATCAGATGAGGTGGTGGAGGCATT
GGCACAAACGGCCGGAACGTCACTGCGGCGGTTGGATTTGAATTCTAACG
GGCGTCTGACAGACGCCTCTTTGGTGGCGCTCGTCCAGTGCTGTGGGAGT
AGCCTGGAGGAGGTGGATCTGTCCTTCTGCCGCAAGCTGACCAACGAGGG
CCTGGGCTATCTGGCGGACTCGTGCACACGTTTGTCGAAAATAACCCTTT
GGGGATGCACGCAGGTGACGGACGTTTTCCTGAAGGGTCATCGGCGTGAT
AGGCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGATAGCGCTGGA
AGGAGGAGGAGGAGGAAAGTAGATGTATAAACTAGACTTGCGAAGCCTTC
CACATCTAAGGGACGAAGATCTGCTCGCCCTCCTTGTGAAGAATGGAGGA
ACGCTCCAGGCCTTGGCTGTGGGGGAGTGCAAACAGCTTACAGACATGGC
CCTCGCTCATATTGCCGACCACTGCGAGCGACTCACCGAGCTTGACCTTG
GAGGGTTGCATCGGGTGGACAGGGACGCGCTGCAGGCCCTCTTCCTCACC
CCGTCCGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGTGCGGC
ATCAGATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTCACTGC
GGCGGTTGGATTTGAATTCTAACGGGCGTCTGACAGACGCCTCTTTGGTG
GCGCTCGTCCAGTGCTGTGGGAGTAGCCTGGAGGAGGTGGATCTGTCCTT
CTGCCGCAAGCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTCGTGCA
CACGTTTGTCGAAAATAACCCTTTGGGGATGCACGCAGGTGACGGACGTT
TTCCTGAAGGGTCATCGGCGTGATAGGCTGGTGGTGGTGGGTCGGGGGGG
GAGTGGAAGCCGGATAGCGCTGGAAGGAGGAGGAGGAGGAAAGTAGATGT
ATAAACTAGACTTGCGAAGCCTTCCACATCTAAGGGACGAAGATCTGCTC
GCCCTCCTTGTGAAGAATGGAGGAACGCTCCAGGCCTTGGCTGTGGGGGA
GTGCAAACAGCTTACAGACATGGCCCTCGCTCATATTGCCGACCACTGCG
AGCGACTCACCGAGCTTGACCTTGGAGGGTTGCATCGGGTGGACAGGGAC
GCGCTGCAGGCCCTCTTCCTCACCCCGTCCGCCGCCTCCTCGCTTTCTTG
TGTCTCCCTCGCCCGGAGTGCGGCATCAGATGAGGTGGTGGAGGCATTGG
CACAAACGGCCGGAACGTCACTGCGGCGGTTGGATTTGAATTCTAACGGG
CGTCTGACAGACGCCTCTTTGGTGGCGCTCGTCCAGTGCTGTGGGAGTAG
CCTGGAGGAGGTGGATCTGTCCTTCTGCCGCAAGCTGACCAACGAGGGCC
TGGGCTATCTGGCGGACTCGTGCACACGTTTGTCGAAAATAACCCTTTGG
GGATGCACGCAGGTGACGGACGTTTTCCTGAAGGGTCATCGGCGTGATAG
GCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGATAGCGCTGGAAG
GAGGAGGAGGAGGAAAGTAGATGTATAAACTAGACTTGCGAAGCCTTCCA
CATCTAAGGGACGAAGATCTGCTCGCCCTCCTTGTGAAGAATGGAGGAAC
GCTCCAGGCCTTGGCTGTGGGGGAGTGCAAACAGCTTACAGACATGGCCC
TCGCTCATATTGCCGACCACTGCGAGCGACTCACCGAGCTTGACCTTGGA
GGGTTGCATCGGGTGGACAGGGACGCGCTGCAGGCCCTCTTCCTCACCCC
GTCCGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGTGCGGCAT
CAGATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTCACTGCGG
CGGTTGGATTTGAATTCTAACGGGCGTCTGACAGACGCCTCTTTGGTGGC
GCTCGTCCAGTGCTGTGGGAGTAGCCTGGAGGAGGTGGATCTGTCCTTCT
GCCGCAAGCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTCGTGCACA
CGTTTGTCGAAAATAACCCTTTGGGGATGCACGCAGGTGACGGACGTTTT
CCTGAAGGGTCATCGGCGTGATAGGCTGGTGGTGGTGGGTCGGGGGGGGA
GTGGAAGCCGGATAGCGCTGGAAGGAGGAGGAGGAGGAAAGTAG

Synonyms

Publications