jgi.p|Nanoce1779_2|593099, mRNA_5912 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593099
Unique Name	mRNA_5912
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1264
Alignment location	scaffold_14:35948..37211 +

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Properties


Property Name	Value
TranscriptId	593185
Track	FilteredModels2
ProteinId	593099

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:35948..37211 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593099	gene_5912	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593099	mRNA_5912-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5912	CDS_5912	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:35948..37211+
coding sequence from alignment at scaffold_14:35948..37211+

mRNA sequence

>mRNA_5912 ID=mRNA_5912|Name=jgi.p|Nanoce1779_2|593099|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp
GGACCGCCGGCGTCTGGTGGGCAAAGATTTCCCACCTTTATGGGGTTGTG
TCCCTTTGACTATGGGCAGAGCCTGTGTTATCTGACCACGACATGTGGTG
GGAAGAGTGTTGCACCCTTGGCTCAGAAGGAGAGTGCAGGTACATAGCGG
AACTGGATTCGAGTGATCCGGACGCGGATGAGGGGCAAAAGAAGAACGAG
AGGTGATGTGGTTGATGCTCGTGGTGGTGATACGGGCACGTGCTTGCGGC
CGGGCCTTGGCTCACCAGGGGGCGCTTTCCCAGACGTGCGTGTAAGAAGT
TGTTGGTTCGTTGTGCCAGTGTCCCCTGGCCTTTTTTTGCGGCCGAAGGC
GTCATTGACGTGTTTGTCGCAGGGTGTCTGCCCGCCTGCCTCCCTTTTGC
AAATCCACCGATGATGGGGATGCTGCCGCGGGCGGGCTCAAACTACCTAG
ACTCTCTAGCACGCCTTTCCCATTCCTTCTACAGGCAATCTATCTAGACC
AATACTTGCCCACGCCACGCCACGGCAAAGCACGGCGGAGGCTGGAGGCA
GGACGGATCATGGACCCGAGAGACTCCGAAATGCTGCTGTGGGGTTTGCT
CGGTGTTGGTAGATGCTGAGGACCCGCATCACGACCCTGCATGCCCCTAG
CCGTCCTGTCTACTACTATAGCCAGTGCATCAGTGAGAGGAGGACTGCAA
GTGCAGCGGCGAGACGCTGGAGGAGGGTATGAGTGGACGTCTGTTTGCAG
TCATGGCGGGGCTCTTGGGGAGAGAGCCAACTGGCGCCCGAGCCCGGCGG
CATTGTAGCTTGAGCCTCCTACCCCTATCTCTTAATCTGCTCCTGGAACT
CAGTTTTCTTCTCCTCCATATCTTTGGGCTAGTTTTTTGCGCCCAGGCGC
CTCCCTTTGCCGGCGGCGTTTGTTTTTTCTGGTGCTACGTCGCGTTTATG
TTGCGACGGCGCTGGTGTACGGCATCGCCCCCTTTAGAGCTGAAATTGAC
AGAGATGGCTACATGCATGTGTTGTATACATGAATGCTCATGCAGGAGTC
CGGAAGGCGCCTCTTGGTATCAAGTGGATGCCCCGCTGCCGTCTTCCTGT
GATAATTCTCTCCTTACACCCTCTCCCTCCCCCCGTCTCGTCCTCCCCCC
TTTTCCCTCATTTCCGCACAGGTGGGCGTAACCGGTGGGTCTACAAAGCT
GCCTGAACCTCACAACGTCGACGCACACGCACAACGCACTCCCCTCCTTG
CTCCGCTCCTTCTC

protein sequence of jgi.p|Nanoce1779_2|593099

>mRNA_5912-protein ID=mRNA_5912-protein|Name=jgi.p|Nanoce1779_2|593099|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSGRLFAVMAGLLGREPTGARARRHCSLSLLPLSLNLLLELSFLLLHIFG
LVFCAQAPPFAGGVCFFWCYVAFMLRRRWCTASPPLELKLTEMATCMCCI
HECSCRSPEGASWYQVDAPLPSSCDNSLLTPSPSPRLVLPPFPSFPHRWA
*

mRNA from alignment at scaffold_14:35948..37211+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5912 ID=mRNA_5912|Name=jgi.p|Nanoce1779_2|593099|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp|location=Sequence derived from alignment at scaffold_14:35948..37211+ (Nannochloropsis oceanica)
GGACCGCCGGCGTCTGGTGGGCAAAGATTTCCCACCTTTATGGGGTTGTG
TCCCTTTGACTATGGGCAGAGCCTGTGTTATCTGACCACGACATGTGGTG
GGAAGAGTGTTGCACCCTTGGCTCAGAAGGAGAGTGCAGGTACATAGCGG
AACTGGATTCGAGTGATCCGGACGCGGATGAGGGGCAAAAGAAGAACGAG
AGGTGATGTGGTTGATGCTCGTGGTGGTGATACGGGCACGTGCTTGCGGC
CGGGCCTTGGCTCACCAGGGGGCGCTTTCCCAGACGTGCGTGTAAGAAGT
TGTTGGTTCGTTGTGCCAGTGTCCCCTGGCCTTTTTTTGCGGCCGAAGGC
GTCATTGACGTGTTTGTCGCAGGGTGTCTGCCCGCCTGCCTCCCTTTTGC
AAATCCACCGATGATGGGGATGCTGCCGCGGGCGGGCTCAAACTACCTAG
ACTCTCTAGCACGCCTTTCCCATTCCTTCTACAGGCAATCTATCTAGACC
AATACTTGCCCACGCCACGCCACGGCAAAGCACGGCGGAGGCTGGAGGCA
GGACGGATCATGGACCCGAGAGACTCCGAAATGCTGCTGTGGGGTTTGCT
CGGTGTTGGTAGATGCTGAGGACCCGCATCACGACCCTGCATGCCCCTAG
CCGTCCTGTCTACTACTATAGCCAGTGCATCAGTGAGAGGAGGACTGCAA
GTGCAGCGGCGAGACGCTGGAGGAGGGTATGAGTGGACGTCTGTTTGCAG
TCATGGCGGGGCTCTTGGGGAGAGAGCCAACTGGCGCCCGAGCCCGGCGG
CATTGTAGCTTGAGCCTCCTACCCCTATCTCTTAATCTGCTCCTGGAACT
CAGTTTTCTTCTCCTCCATATCTTTGGGCTAGTTTTTTGCGCCCAGGCGC
CTCCCTTTGCCGGCGGCGTTTGTTTTTTCTGGTGCTACGTCGCGTTTATG
TTGCGACGGCGCTGGTGTACGGCATCGCCCCCTTTAGAGCTGAAATTGAC
AGAGATGGCTACATGCATGTGTTGTATACATGAATGCTCATGCAGGAGTC
CGGAAGGCGCCTCTTGGTATCAAGTGGATGCCCCGCTGCCGTCTTCCTGT
GATAATTCTCTCCTTACACCCTCTCCCTCCCCCCGTCTCGTCCTCCCCCC
TTTTCCCTCATTTCCGCACAGGTGGGCGTAACCGGTGGGTCTACAAAGCT
GCCTGAACCTCACAACGTCGACGCACACGCACAACGCACTCCCCTCCTTG
CTCCGCTCCTTCTC

Coding sequence (CDS) from alignment at scaffold_14:35948..37211+

>mRNA_5912 ID=mRNA_5912|Name=jgi.p|Nanoce1779_2|593099|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_14:35948..37211+ (Nannochloropsis oceanica)
ATGAGTGGACGTCTGTTTGCAGTCATGGCGGGGCTCTTGGGGAGAGAGCC
AACTGGCGCCCGAGCCCGGCGGCATTGTAGCTTGAGCCTCCTACCCCTAT
CTCTTAATCTGCTCCTGGAACTCAGTTTTCTTCTCCTCCATATCTTTGGG
CTAGTTTTTTGCGCCCAGGCGCCTCCCTTTGCCGGCGGCGTTTGTTTTTT
CTGGTGCTACGTCGCGTTTATGTTGCGACGGCGCTGGTGTACGGCATCGC
CCCCTTTAGAGCTGAAATTGACAGAGATGGCTACATGCATGTGTTGTATA
CATGAATGCTCATGCAGGAGTCCGGAAGGCGCCTCTTGGTATCAAGTGGA
TGCCCCGCTGCCGTCTTCCTGTGATAATTCTCTCCTTACACCCTCTCCCT
CCCCCCGTCTCGTCCTCCCCCCTTTTCCCTCATTTCCGCACAGGTGGGCG
TAA

Synonyms

Publications