jgi.p|Nanoce1779_2|593095, mRNA_5911 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593095
Unique Name	mRNA_5911
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3054
Alignment location	scaffold_14:30539..33592 -

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Properties


Property Name	Value
TranscriptId	593181
Track	FilteredModels2
ProteinId	593095

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:30539..33592 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593095	gene_5911	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593095	mRNA_5911-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5911	CDS_5911	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:30539..33592-
coding sequence from alignment at scaffold_14:30539..33592-

mRNA sequence

>mRNA_5911 ID=mRNA_5911|Name=jgi.p|Nanoce1779_2|593095|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp
ACAGAAGCACATCACAATAAATTTGACCACATAGATGCCTTTTAAGGGGA
AAGAGTACACATAGAAGACAGCGCGCGAGAAGAGTCGACCAGACGTGGTC
GTGGTCGAAAACGGGGGCGTGCCCAAGGGAGTGAAATTTAGGGGCGAGTA
GATCCATCATTTGACAGCATGGGCGCAGGGGCCGTGGCCGTGGTGGAGTC
GCGGGATGTAGCCATGGGCCATGTAAGACAGTCGTCGCAGTGCGGGGCCG
TGGTCGTGACGGTTTTGCCATGGATGTGGGCCTAAAATTAGGAGACTACC
ACTACATTATCTTCAAGGGGAGGCCCACCTTGAGGCAGTATAAGCACGTG
TGAAAATGGCGACGACATTCAATACCACAGAAGCATCAACATGGCTGTGG
GCCTGAGACGTGGGCCGGGCGTAAGATGTTCGCCATCGCAGGAACATGAA
CGTGTAGGTGAGAGCATCAACGCGAGGCCCAACCACACGTCAGTTGAGCG
TGTGTGAATCTGATACAGAAGGATCCGCTGCGAGATCCGCCGGCAGTGGC
TTGGATCTACAATGGAGCTCCGGGCGTCTTTTGAGAGCATATGGATGAGG
AAGACCGGGCAAAGTAAGGCGTTGAACCCAGTGCCCTCCTGTCTCAGTGT
CTCTTTTCCCAAGCTCCCGCGTCTGCCACCTGAACAGAAGGAGTTCAGGC
TCAGACAAACAGTACAAGCCAAGAAATTCCGACGGAGGGCTGTGTGTCCC
TTGCAATCCGTGTGTCCCTTGCAATCCGTCTCTCTCATCACAACATCAAT
TTCCTTTTCTTCTGTCACTGACTTCTATTCCTATGCCCTTCTACTTCAGT
TGTCCATTCTGGGTGCAGGTTTAAGTCACTAATATGTAAAATTGTCCATT
CTGGGTGCAGGTTTCACTTACTAATATAATAATTAATTTTCATAATGTTA
TCTCTTCAATTAATAATGTCAAATGGCGCGATTAGCCATATGCCAAAGAC
GATGCACTGTTTGTAAATCACATACATATTTGCAACCGACAAATATGTAG
GAGGCAATTTGTCCGCCCCTTCAAAAATAAAATTATTCAGCAACGCCCAC
GATCATCCTCCCTTTCTTTGGATCGTCCAACGCCCTCCGTAAAATGTTAG
AGTTTCACATTAATAAGATTTTGTTGCCTGGTGTATAAAAGAAAAACATA
AATTCTGACTAGATGTTTTATTCCCTTACCCCTGATAAGGTATACTTTTG
GGTCATCTTTCGATGGCAGCATCTCCTTACAGGCAGTGGCCTCGGAGACA
CGTCTTCAAAATTCTGAATGGCCACAAAAACACCTTAGTATTCGCAGCAG
GATTCTTGATCGCCCTGCTCGTATTGAAGCTTGACCGCACCTATGACGCA
TCTAAAGACCAGAAAGGTTCCATTCCTTCACACGCCACTTCTACACTACT
TGCTGTGCCATCAGATGAACAAGCGTGCCGTGTGCAGCTCGGATCTAGCT
GCAGTGCGGGCCGACACGACGTCGCCAATCGGTTTACGAATATCTACAAG
TCTGCTGATTGGGGGACTTCGCCGTCTTCTCATACCCGTAGTGGCTCCGG
AAGCACGATTACAGGAGCTTTTGAAACGATCACCAAGCTCGAGCCTAAAT
TTCGCGAACTTAATATCACTGCCATAGCGGACGTGCCTTCGGGAGATTGT
GGCTGGCAGTTTGCTTTGAGCACCATAAATGCGGCAGACGCCTATTTCGG
CGGAGACATTACGCCGCATGTAGCGCAAGAAAATGCGCAAATTTTTCACA
ACCATCTGAATAAAGTATTTGCCTTCTGGGATCTGGTAGAGTGTCCCATT
CCTCAGTGGTACACCACATGCGATTCCACGCCGCGGCCCTTTGATATCGT
GATTGTGAGGGATGTCATTCAGCATATGAGGTTGAACAATGCGGCAAGGG
CCATCAAATTGATAGTGGAGGAATCAGGTGCCAGCTACATGGCTGTGACC
TCCTTCTCTACAGAGAGATGTACCGACCAGTGCTTGACTGCCCTCCAATC
CGACGGAGGCTTCTACCACAACAATTTGCACTGTCCACCGTGGAATTTCC
CTGAACCATTCTATAGCTTCCCTAGTCACGACAACTTCCCCGAGGAGGCC
GACCATATGGAATTGTATCGTGTTGACGACCTGAAGACTATAGTGGCCAA
TTGGCAGGAGCCACCTTGCGCGGTAGCCTCGAAGTGAAGCAGGGTATCTT
ACTGGCTTTTTAGGTATCCACCGACCATACTTTAATGCGTGTTCTCTAAG
ACAAACAATTTGGGCTGTCGTGAAAACGCGTCATACTTAAAGAGATCGTC
AAGCCGCCCGAATTTTGTTTTGATGAAACAGGCCAAAATTGCACCTGAGG
ACGTTATACAGGGGGGAAAGGGGCCCCAATATGAATAATGAGGCTTATTC
ATATAAGAAGCCCGGAAAAAGGAGCGAAATAATTTTATCCACGTCCGAGC
TTTCCGTGTTTTGAGCTTATTCCAGTGTGTGTTTCTTATTATTTCCATGG
CTCTCCTTGTTCTTGTTCTCCATGCTCTTCTAGTTCTTCTTCTCCTTGGT
GTTGTTTTCCTTGTTTTCTCTATTTTCTTACCTTCTTCTCCCTGTCTTTC
TCTTCCTCTTCTTTCTCCTTTTCATCTTCTATCTTTTCTTCCCGCTCATT
TTCATCTTGTTCTCCTGCTCCTCGTTGCTGCAGTTGCTGCCGCTACTGCG
GCTGCTCTATCTGTCTATTTGTACCTCGCTCACTCGCTGTTCGAGCCTAG
CTGGTGATGCTGTGGTCGTATGCTGCTGTGTCTCTTTCACTGCTGCTGTT
GCTGCTGTTTCTTCTCCAAAGACAAAGATTGACTCCCTCCCTCCCTCCTT
CGTCATTGCTGCTACTCTTGCCGGGATCACGACGACGGTGGAAATCATGC
TTCTCCTCTCTTTTTCTCACCCTCCCTCCTCCTTCTCCTCCCTTTCCTTC
TCGCCCTCCTTAACCTTCCAATCAACATTTTTCAAAGCGTTGGCTTTCTG
CCTG

protein sequence of jgi.p|Nanoce1779_2|593095

>mRNA_5911-protein ID=mRNA_5911-protein|Name=jgi.p|Nanoce1779_2|593095|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MAASPYRQWPRRHVFKILNGHKNTLVFAAGFLIALLVLKLDRTYDASKDQ
KGSIPSHATSTLLAVPSDEQACRVQLGSSCSAGRHDVANRFTNIYKSADW
GTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQF
ALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWY
TTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFST
ERCTDQCLTALQSDGGFYHNNLHCPPWNFPEPFYSFPSHDNFPEEADHME
LYRVDDLKTIVANWQEPPCAVASK*

mRNA from alignment at scaffold_14:30539..33592-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5911 ID=mRNA_5911|Name=jgi.p|Nanoce1779_2|593095|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp|location=Sequence derived from alignment at scaffold_14:30539..33592- (Nannochloropsis oceanica)
ACAGAAGCACATCACAATAAATTTGACCACATAGATGCCTTTTAAGGGGA
AAGAGTACACATAGAAGACAGCGCGCGAGAAGAGTCGACCAGACGTGGTC
GTGGTCGAAAACGGGGGCGTGCCCAAGGGAGTGAAATTTAGGGGCGAGTA
GATCCATCATTTGACAGCATGGGCGCAGGGGCCGTGGCCGTGGTGGAGTC
GCGGGATGTAGCCATGGGCCATGTAAGACAGTCGTCGCAGTGCGGGGCCG
TGGTCGTGACGGTTTTGCCATGGATGTGGGCCTAAAATTAGGAGACTACC
ACTACATTATCTTCAAGGGGAGGCCCACCTTGAGGCAGTATAAGCACGTG
TGAAAATGGCGACGACATTCAATACCACAGAAGCATCAACATGGCTGTGG
GCCTGAGACGTGGGCCGGGCGTAAGATGTTCGCCATCGCAGGAACATGAA
CGTGTAGGTGAGAGCATCAACGCGAGGCCCAACCACACGTCAGTTGAGCG
TGTGTGAATCTGATACAGAAGGATCCGCTGCGAGATCCGCCGGCAGTGGC
TTGGATCTACAATGGAGCTCCGGGCGTCTTTTGAGAGCATATGGATGAGG
AAGACCGGGCAAAGTAAGGCGTTGAACCCAGTGCCCTCCTGTCTCAGTGT
CTCTTTTCCCAAGCTCCCGCGTCTGCCACCTGAACAGAAGGAGTTCAGGC
TCAGACAAACAGTACAAGCCAAGAAATTCCGACGGAGGGCTGTGTGTCCC
TTGCAATCCGTGTGTCCCTTGCAATCCGTCTCTCTCATCACAACATCAAT
TTCCTTTTCTTCTGTCACTGACTTCTATTCCTATGCCCTTCTACTTCAGT
TGTCCATTCTGGGTGCAGGTTTAAGTCACTAATATGTAAAATTGTCCATT
CTGGGTGCAGGTTTCACTTACTAATATAATAATTAATTTTCATAATGTTA
TCTCTTCAATTAATAATGTCAAATGGCGCGATTAGCCATATGCCAAAGAC
GATGCACTGTTTGTAAATCACATACATATTTGCAACCGACAAATATGTAG
GAGGCAATTTGTCCGCCCCTTCAAAAATAAAATTATTCAGCAACGCCCAC
GATCATCCTCCCTTTCTTTGGATCGTCCAACGCCCTCCGTAAAATGTTAG
AGTTTCACATTAATAAGATTTTGTTGCCTGGTGTATAAAAGAAAAACATA
AATTCTGACTAGATGTTTTATTCCCTTACCCCTGATAAGGTATACTTTTG
GGTCATCTTTCGATGGCAGCATCTCCTTACAGGCAGTGGCCTCGGAGACA
CGTCTTCAAAATTCTGAATGGCCACAAAAACACCTTAGTATTCGCAGCAG
GATTCTTGATCGCCCTGCTCGTATTGAAGCTTGACCGCACCTATGACGCA
TCTAAAGACCAGAAAGGTTCCATTCCTTCACACGCCACTTCTACACTACT
TGCTGTGCCATCAGATGAACAAGCGTGCCGTGTGCAGCTCGGATCTAGCT
GCAGTGCGGGCCGACACGACGTCGCCAATCGGTTTACGAATATCTACAAG
TCTGCTGATTGGGGGACTTCGCCGTCTTCTCATACCCGTAGTGGCTCCGG
AAGCACGATTACAGGAGCTTTTGAAACGATCACCAAGCTCGAGCCTAAAT
TTCGCGAACTTAATATCACTGCCATAGCGGACGTGCCTTCGGGAGATTGT
GGCTGGCAGTTTGCTTTGAGCACCATAAATGCGGCAGACGCCTATTTCGG
CGGAGACATTACGCCGCATGTAGCGCAAGAAAATGCGCAAATTTTTCACA
ACCATCTGAATAAAGTATTTGCCTTCTGGGATCTGGTAGAGTGTCCCATT
CCTCAGTGGTACACCACATGCGATTCCACGCCGCGGCCCTTTGATATCGT
GATTGTGAGGGATGTCATTCAGCATATGAGGTTGAACAATGCGGCAAGGG
CCATCAAATTGATAGTGGAGGAATCAGGTGCCAGCTACATGGCTGTGACC
TCCTTCTCTACAGAGAGATGTACCGACCAGTGCTTGACTGCCCTCCAATC
CGACGGAGGCTTCTACCACAACAATTTGCACTGTCCACCGTGGAATTTCC
CTGAACCATTCTATAGCTTCCCTAGTCACGACAACTTCCCCGAGGAGGCC
GACCATATGGAATTGTATCGTGTTGACGACCTGAAGACTATAGTGGCCAA
TTGGCAGGAGCCACCTTGCGCGGTAGCCTCGAAGTGAAGCAGGGTATCTT
ACTGGCTTTTTAGGTATCCACCGACCATACTTTAATGCGTGTTCTCTAAG
ACAAACAATTTGGGCTGTCGTGAAAACGCGTCATACTTAAAGAGATCGTC
AAGCCGCCCGAATTTTGTTTTGATGAAACAGGCCAAAATTGCACCTGAGG
ACGTTATACAGGGGGGAAAGGGGCCCCAATATGAATAATGAGGCTTATTC
ATATAAGAAGCCCGGAAAAAGGAGCGAAATAATTTTATCCACGTCCGAGC
TTTCCGTGTTTTGAGCTTATTCCAGTGTGTGTTTCTTATTATTTCCATGG
CTCTCCTTGTTCTTGTTCTCCATGCTCTTCTAGTTCTTCTTCTCCTTGGT
GTTGTTTTCCTTGTTTTCTCTATTTTCTTACCTTCTTCTCCCTGTCTTTC
TCTTCCTCTTCTTTCTCCTTTTCATCTTCTATCTTTTCTTCCCGCTCATT
TTCATCTTGTTCTCCTGCTCCTCGTTGCTGCAGTTGCTGCCGCTACTGCG
GCTGCTCTATCTGTCTATTTGTACCTCGCTCACTCGCTGTTCGAGCCTAG
CTGGTGATGCTGTGGTCGTATGCTGCTGTGTCTCTTTCACTGCTGCTGTT
GCTGCTGTTTCTTCTCCAAAGACAAAGATTGACTCCCTCCCTCCCTCCTT
CGTCATTGCTGCTACTCTTGCCGGGATCACGACGACGGTGGAAATCATGC
TTCTCCTCTCTTTTTCTCACCCTCCCTCCTCCTTCTCCTCCCTTTCCTTC
TCGCCCTCCTTAACCTTCCAATCAACATTTTTCAAAGCGTTGGCTTTCTG
CCTG

Coding sequence (CDS) from alignment at scaffold_14:30539..33592-

>mRNA_5911 ID=mRNA_5911|Name=jgi.p|Nanoce1779_2|593095|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_14:30539..33592- (Nannochloropsis oceanica)
ATGGCAGCATCTCCTTACAGGCAGTGGCCTCGGAGACACGTCTTCAAAAT
TCTGAATGGCCACAAAAACACCTTAGTATTCGCAGCAGGATTCTTGATCG
CCCTGCTCGTATTGAAGCTTGACCGCACCTATGACGCATCTAAAGACCAG
AAAGGTTCCATTCCTTCACACGCCACTTCTACACTACTTGCTGTGCCATC
AGATGAACAAGCGTGCCGTGTGCAGCTCGGATCTAGCTGCAGTGCGGGCC
GACACGACGTCGCCAATCGGTTTACGAATATCTACAAGTCTGCTGATTGG
GGGACTTCGCCGTCTTCTCATACCCGTAGTGGCTCCGGAAGCACGATTAC
AGGAGCTTTTGAAACGATCACCAAGCTCGAGCCTAAATTTCGCGAACTTA
ATATCACTGCCATAGCGGACGTGCCTTCGGGAGATTGTGGCTGGCAGTTT
GCTTTGAGCACCATAAATGCGGCAGACGCCTATTTCGGCGGAGACATTAC
GCCGCATGTAGCGCAAGAAAATGCGCAAATTTTTCACAACCATCTGAATA
AAGTATTTGCCTTCTGGGATCTGGTAGAGTGTCCCATTCCTCAGTGGTAC
ACCACATGCGATTCCACGCCGCGGCCCTTTGATATCGTGATTGTGAGGGA
TGTCATTCAGCATATGAGGTTGAACAATGCGGCAAGGGCCATCAAATTGA
TAGTGGAGGAATCAGGTGCCAGCTACATGGCTGTGACCTCCTTCTCTACA
GAGAGATGTACCGACCAGTGCTTGACTGCCCTCCAATCCGACGGAGGCTT
CTACCACAACAATTTGCACTGTCCACCGTGGAATTTCCCTGAACCATTCT
ATAGCTTCCCTAGTCACGACAACTTCCCCGAGGAGGCCGACCATATGGAA
TTGTATCGTGTTGACGACCTGAAGACTATAGTGGCCAATTGGCAGGAGCC
ACCTTGCGCGGTAGCCTCGAAGTGA

Synonyms

Publications