jgi.p|Nanoce1779_2|75308, mRNA_5910 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|75308
Unique Name	mRNA_5910
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	841
Alignment location	scaffold_14:28231..30399 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	75394
Track	FilteredModels2
ProteinId	75308

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:28231..30399 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|75308	gene_5910	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|75308	mRNA_5910-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5910	CDS_5910	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:28231..30399+
coding sequence from alignment at scaffold_14:28231..30399+

mRNA sequence

>mRNA_5910 ID=mRNA_5910|Name=jgi.p|Nanoce1779_2|75308|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
ACCCTCCCCCCTCCCCCTCCTCCCCGGGCCGATGGCAGTGGTGGGTAGTG
GCCACTCGGGGAGTCTTTGGTTAGCCACGTGGAAAGGCACACAGGTCGCT
GTCAAAATGATCAAGGCTCCCGACGAAGGCAGCGAGAAGCACGAGCGTTT
CCTCCATGATTTTGAGAGAGAACGCAGCATTGTCCGAGGCCTCCGTCATC
CTAACCTCTGCCGCCTCTACGGTGTTTCCTCCTCTCCTGGCGGGCGGACG
TTCTGCCTAGTCTATGATTTTCTAGAGGGCGGCTCGCTGGCCGGGCTGTT
GAGGAATCGCAACCGGCCCTACGACTTGTTTTCCATTGCTTTAGACGTGG
CGGAGGGCATGGACTACCTCCATCGACGAGGGGTCATGCACCGCGATCTC
AAGCCCGATAACCTCCTCCTCAACAAGCAAGGGCGCGCCGTCATCGCCGA
TTTCGGTCTTGTCTGCCCCACCATCTCCGAGGCTGACCATACAGGGGAGA
CGGGCACTTACCGCTACATGTCTGCAGAGGTCATCCGTCACGAGCCCTAC
TCCACCGCCGCCGATGTGTACTCGTACGGCATCGTCCTCTGGGAGCTTCT
GACGCGGGAGCAGCCGTTCAGAGGCATGACCCCCATCCAGGCTGCCTTTG
CGGTGGCGCGGCAGGGCCATCGCCCCGCCCCTCCCTCCTCGCACACCACC
CAAGCTCGCGAAGCTCATCCAAATGTGCTGGCATGACGATCCGATCCGCC
GGCCCACTTTCAGTCAGGTAGTGGTGGCCCTGAAAGAGATACGACGGGAG
ATCTATGGAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|75308

>mRNA_5910-protein ID=mRNA_5910-protein|Name=jgi.p|Nanoce1779_2|75308|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MAVVGSGHSGSLWLATWKGTQVAVKMIKAPDEGSEKHERFLHDFERERSI
VRGLRHPNLCRLYGVSSSPGGRTFCLVYDFLEGGSLAGLLRNRNRPYDLF
SIALDVAEGMDYLHRRGVMHRDLKPDNLLLNKQGRAVIADFGLVCPTISE
ADHTGETGTYRYMSAEVIRHEPYSTAADVYSYGIVLWELLTREQPFRGMT
PIQAAFAVARQGHRPAPPSSHTTQAREAHPNVLA*

mRNA from alignment at scaffold_14:28231..30399+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5910 ID=mRNA_5910|Name=jgi.p|Nanoce1779_2|75308|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at scaffold_14:28231..30399+ (Nannochloropsis oceanica)
ACCCTCCCCCCTCCCCCTCCTCCCCGGGCCGATGGCAGTGGTGGGTAGTG
GCCACTCGGGGAGTCTTTGGTTAGCCACGTGGAAAGGCACACAGGTCGCT
GTCAAAATGATCAAGGTACGACGATACCGCTGTCCCTCCCTCCCTTCCTT
CCTCCCTCCCTCCCATCCGTCTTCAACCCCCACCCCTTCCCTTTTTTCCT
TGCCCTCCCTCCCTCCCTCCCTCCTTCCAGGCTCCCGACGAAGGCAGCGA
GAAGCACGAGCGTTTCCTCCATGATTTTGAGAGAGAACGCAGCATTGTCC
GAGGCCTCCGTCATCCTAACCTCTGCCGCCTCTACGGTGTTTCCTCCTCT
CCTGGTACGCAATCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTC
TCCCTCGGTGTCCTGCTGGGGTAATGGACGATAGGGGCCTTTCTTTTTCG
GGGGTCCTCCCTCCCTCCCTCCCTCCCTCGGGCCCTTCCTCCTTTCCTAC
TTTCCTCCCTCGCTGTTTCCCTCCCTCCCTCCTTCCCTCCCCCTCTCTGT
TCGACATGGTCGGGTCTAACCTCTCCGTTTCTCCTCCTTCCCTCCCTTCC
CCCCTCCCTCCCCCCCTCCTTCCGCAGGCGGGCGGACGTTCTGCCTAGTC
TATGATTTTCTAGAGGGCGGCTCGCTGGCCGGGCTGTTGAGGAATCGGTG
CGTGGCATGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGA
GGAGAGATGGGACATGGCTTTGTGAGATGCACGACTTGACTTGTGTTTGT
CGTCCCCTCCCTCCCTCCCTCCCCCCCTCCACCCCTCAAGCAACCGGCCC
TACGACTTGTTTTCCATTGCTTTAGACGTGGCGGAGGGCATGGACTACCT
CCATCGACGAGGGGTCATGCACCGCGATCTCAAGGTACCTCCCTCCCTCC
CTCCCTCCCTACCTCCCTTCCCCTCCCCTCCCTTTTTTCCTCTGGTATCG
TCTTATAACTCTCCCTCCCTCCCTCTCTCCCTCTCTCCCTCCTTTAAGCC
CGATAACCTCCTCCTCAACAAGCAAGGGCGCGCCGTCATCGCCGATTTCG
GTCTTGTCTGCCCCACCATCTCCGAGGCTGACCATACAGGTCGGTCGGGA
GGCAGGGAGGGAGGCAGGGAGGGAGGAAAGGGTTGTTTTACTCATTCTTC
GCATCTTACCTTGTCGTGCCTGGAGCCTCTTTCTTCCTTTCTTGATTACT
ACGGGGGAGGGAGGGAGGGAGGGACGGACGGAGGGAGAGAGGGTGTCGTG
TTGGGCTGTACATATTATCATCGTGTTGGTATCTGCAACACTGTAGCGCC
TTTTCGATCATTTTTCTCCTTCTGACACCCCTCATTCTCGTCCTTCTTAC
ACTCCTCATTCTCTCTCGTCCGTATTGCTGTTTCTCGTCCACACAGGGGA
GACGGGCACTTACCGCTACATGTCTGCAGAGGTCATCCGTCACGAGGTGC
GCCTCGAAGAAGGGGGGGAAGGAGGGGGAGGGAGGAGTAGACTTACCTAT
TCACCCTCCATGCGTTTCAATTAATTTCTTCTTTCCCTTCCTCCAGGTCC
ACTCCCCATGAGATCCTTCTGCATGTTGGCACTTACCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCAGCCCTACTCCACCGCCGCCGATGTGTACTCGTAC
GGCATCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCGTTCAGAGGCAT
GACCCCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGGTAGGGAGGGGG
GGAGGGAAGAAGGGTGGGAGGAAAGGAGGGATGCTATCCGGCATGCGGGA
GCTACAGGCCTGAGAGCTGCCTCAGTCATTCTCTCGGTGATTCATCCAAA
TAGATTATATCAGGCTCAGATCATACCTCCCTCCCCTCCCTCCCCTCCCT
CCCTTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCAGGCCATCG
CCCCGCCCCTCCCTCCTCGCACACCACCCAAGCTCGCGAAGCTCATCCAA
ATGTGCTGGCATGACGATCCGATCCGCCGGCCCACTTTCAGTCAGGTAGT
GGTGGCCCTGAAAGAGATACGACGGGAGATCTATGGAGAGGCAGGAGGAG
GAGGAGGAGGAGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_14:28231..30399+

>mRNA_5910 ID=mRNA_5910|Name=jgi.p|Nanoce1779_2|75308|organism=Nannochloropsis oceanica|type=CDS|length=5640bp|location=Sequence derived from alignment at scaffold_14:28231..30399+ (Nannochloropsis oceanica)
ATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCTTTGGTTAGCCACGTG
GAAAGGCACACAGGTCGCTGTCAAAATGATCAAGGCTCCCGACGAAGGCA
GCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAGAGAGAACGCAGCATT
GTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCTCTACGGTGTTTCCTC
CTCTCCTGGCGGGCGGACGTTCTGCCTAGTCTATGATTTTCTAGAGGGCG
GCTCGCTGGCCGGGCTGTTGAGGAATCGCAACCGGCCCTACGACTTGTTT
TCCATTGCTTTAGACGTGGCGGAGGGCATGGACTACCTCCATCGACGAGG
GGTCATGCACCGCGATCTCAAGCCCGATAACCTCCTCCTCAACAAGCAAG
GGCGCGCCGTCATCGCCGATTTCGGTCTTGTCTGCCCCACCATCTCCGAG
GCTGACCATACAGGGGAGACGGGCACTTACCGCTACATGTCTGCAGAGGT
CATCCGTCACGAGCCCTACTCCACCGCCGCCGATGTGTACTCGTACGGCA
TCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCGTTCAGAGGCATGACC
CCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGGCCATCGCCCCGCCCC
TCCCTCCTCGCACACCACCCAAGCTCGCGAAGCTCATCCAAATGTGCTGG
CATGAATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCTTTGGTTAGCC
ACGTGGAAAGGCACACAGGTCGCTGTCAAAATGATCAAGGCTCCCGACGA
AGGCAGCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAGAGAGAACGCA
GCATTGTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCTCTACGGTGTT
TCCTCCTCTCCTGGCGGGCGGACGTTCTGCCTAGTCTATGATTTTCTAGA
GGGCGGCTCGCTGGCCGGGCTGTTGAGGAATCGCAACCGGCCCTACGACT
TGTTTTCCATTGCTTTAGACGTGGCGGAGGGCATGGACTACCTCCATCGA
CGAGGGGTCATGCACCGCGATCTCAAGCCCGATAACCTCCTCCTCAACAA
GCAAGGGCGCGCCGTCATCGCCGATTTCGGTCTTGTCTGCCCCACCATCT
CCGAGGCTGACCATACAGGGGAGACGGGCACTTACCGCTACATGTCTGCA
GAGGTCATCCGTCACGAGCCCTACTCCACCGCCGCCGATGTGTACTCGTA
CGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCGTTCAGAGGCA
TGACCCCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGGCCATCGCCCC
GCCCCTCCCTCCTCGCACACCACCCAAGCTCGCGAAGCTCATCCAAATGT
GCTGGCATGAATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCTTTGGT
TAGCCACGTGGAAAGGCACACAGGTCGCTGTCAAAATGATCAAGGCTCCC
GACGAAGGCAGCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAGAGAGA
ACGCAGCATTGTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCTCTACG
GTGTTTCCTCCTCTCCTGGCGGGCGGACGTTCTGCCTAGTCTATGATTTT
CTAGAGGGCGGCTCGCTGGCCGGGCTGTTGAGGAATCGCAACCGGCCCTA
CGACTTGTTTTCCATTGCTTTAGACGTGGCGGAGGGCATGGACTACCTCC
ATCGACGAGGGGTCATGCACCGCGATCTCAAGCCCGATAACCTCCTCCTC
AACAAGCAAGGGCGCGCCGTCATCGCCGATTTCGGTCTTGTCTGCCCCAC
CATCTCCGAGGCTGACCATACAGGGGAGACGGGCACTTACCGCTACATGT
CTGCAGAGGTCATCCGTCACGAGCCCTACTCCACCGCCGCCGATGTGTAC
TCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCGTTCAG
AGGCATGACCCCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGGCCATC
GCCCCGCCCCTCCCTCCTCGCACACCACCCAAGCTCGCGAAGCTCATCCA
AATGTGCTGGCATGAATGGCAGTGGTGGGTAGTGGCCACTCGGGGAGTCT
TTGGTTAGCCACGTGGAAAGGCACACAGGTCGCTGTCAAAATGATCAAGG
CTCCCGACGAAGGCAGCGAGAAGCACGAGCGTTTCCTCCATGATTTTGAG
AGAGAACGCAGCATTGTCCGAGGCCTCCGTCATCCTAACCTCTGCCGCCT
CTACGGTGTTTCCTCCTCTCCTGGCGGGCGGACGTTCTGCCTAGTCTATG
ATTTTCTAGAGGGCGGCTCGCTGGCCGGGCTGTTGAGGAATCGCAACCGG
CCCTACGACTTGTTTTCCATTGCTTTAGACGTGGCGGAGGGCATGGACTA
CCTCCATCGACGAGGGGTCATGCACCGCGATCTCAAGCCCGATAACCTCC
TCCTCAACAAGCAAGGGCGCGCCGTCATCGCCGATTTCGGTCTTGTCTGC
CCCACCATCTCCGAGGCTGACCATACAGGGGAGACGGGCACTTACCGCTA
CATGTCTGCAGAGGTCATCCGTCACGAGCCCTACTCCACCGCCGCCGATG
TGTACTCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAGCAGCCG
TTCAGAGGCATGACCCCCATCCAGGCTGCCTTTGCGGTGGCGCGGCAGGG
CCATCGCCCCGCCCCTCCCTCCTCGCACACCACCCAAGCTCGCGAAGCTC
ATCCAAATGTGCTGGCATGAATGGCAGTGGTGGGTAGTGGCCACTCGGGG
AGTCTTTGGTTAGCCACGTGGAAAGGCACACAGGTCGCTGTCAAAATGAT
CAAGGCTCCCGACGAAGGCAGCGAGAAGCACGAGCGTTTCCTCCATGATT
TTGAGAGAGAACGCAGCATTGTCCGAGGCCTCCGTCATCCTAACCTCTGC
CGCCTCTACGGTGTTTCCTCCTCTCCTGGCGGGCGGACGTTCTGCCTAGT
CTATGATTTTCTAGAGGGCGGCTCGCTGGCCGGGCTGTTGAGGAATCGCA
ACCGGCCCTACGACTTGTTTTCCATTGCTTTAGACGTGGCGGAGGGCATG
GACTACCTCCATCGACGAGGGGTCATGCACCGCGATCTCAAGCCCGATAA
CCTCCTCCTCAACAAGCAAGGGCGCGCCGTCATCGCCGATTTCGGTCTTG
TCTGCCCCACCATCTCCGAGGCTGACCATACAGGGGAGACGGGCACTTAC
CGCTACATGTCTGCAGAGGTCATCCGTCACGAGCCCTACTCCACCGCCGC
CGATGTGTACTCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAGC
AGCCGTTCAGAGGCATGACCCCCATCCAGGCTGCCTTTGCGGTGGCGCGG
CAGGGCCATCGCCCCGCCCCTCCCTCCTCGCACACCACCCAAGCTCGCGA
AGCTCATCCAAATGTGCTGGCATGAATGGCAGTGGTGGGTAGTGGCCACT
CGGGGAGTCTTTGGTTAGCCACGTGGAAAGGCACACAGGTCGCTGTCAAA
ATGATCAAGGCTCCCGACGAAGGCAGCGAGAAGCACGAGCGTTTCCTCCA
TGATTTTGAGAGAGAACGCAGCATTGTCCGAGGCCTCCGTCATCCTAACC
TCTGCCGCCTCTACGGTGTTTCCTCCTCTCCTGGCGGGCGGACGTTCTGC
CTAGTCTATGATTTTCTAGAGGGCGGCTCGCTGGCCGGGCTGTTGAGGAA
TCGCAACCGGCCCTACGACTTGTTTTCCATTGCTTTAGACGTGGCGGAGG
GCATGGACTACCTCCATCGACGAGGGGTCATGCACCGCGATCTCAAGCCC
GATAACCTCCTCCTCAACAAGCAAGGGCGCGCCGTCATCGCCGATTTCGG
TCTTGTCTGCCCCACCATCTCCGAGGCTGACCATACAGGGGAGACGGGCA
CTTACCGCTACATGTCTGCAGAGGTCATCCGTCACGAGCCCTACTCCACC
GCCGCCGATGTGTACTCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCG
GGAGCAGCCGTTCAGAGGCATGACCCCCATCCAGGCTGCCTTTGCGGTGG
CGCGGCAGGGCCATCGCCCCGCCCCTCCCTCCTCGCACACCACCCAAGCT
CGCGAAGCTCATCCAAATGTGCTGGCATGAATGGCAGTGGTGGGTAGTGG
CCACTCGGGGAGTCTTTGGTTAGCCACGTGGAAAGGCACACAGGTCGCTG
TCAAAATGATCAAGGCTCCCGACGAAGGCAGCGAGAAGCACGAGCGTTTC
CTCCATGATTTTGAGAGAGAACGCAGCATTGTCCGAGGCCTCCGTCATCC
TAACCTCTGCCGCCTCTACGGTGTTTCCTCCTCTCCTGGCGGGCGGACGT
TCTGCCTAGTCTATGATTTTCTAGAGGGCGGCTCGCTGGCCGGGCTGTTG
AGGAATCGCAACCGGCCCTACGACTTGTTTTCCATTGCTTTAGACGTGGC
GGAGGGCATGGACTACCTCCATCGACGAGGGGTCATGCACCGCGATCTCA
AGCCCGATAACCTCCTCCTCAACAAGCAAGGGCGCGCCGTCATCGCCGAT
TTCGGTCTTGTCTGCCCCACCATCTCCGAGGCTGACCATACAGGGGAGAC
GGGCACTTACCGCTACATGTCTGCAGAGGTCATCCGTCACGAGCCCTACT
CCACCGCCGCCGATGTGTACTCGTACGGCATCGTCCTCTGGGAGCTTCTG
ACGCGGGAGCAGCCGTTCAGAGGCATGACCCCCATCCAGGCTGCCTTTGC
GGTGGCGCGGCAGGGCCATCGCCCCGCCCCTCCCTCCTCGCACACCACCC
AAGCTCGCGAAGCTCATCCAAATGTGCTGGCATGAATGGCAGTGGTGGGT
AGTGGCCACTCGGGGAGTCTTTGGTTAGCCACGTGGAAAGGCACACAGGT
CGCTGTCAAAATGATCAAGGCTCCCGACGAAGGCAGCGAGAAGCACGAGC
GTTTCCTCCATGATTTTGAGAGAGAACGCAGCATTGTCCGAGGCCTCCGT
CATCCTAACCTCTGCCGCCTCTACGGTGTTTCCTCCTCTCCTGGCGGGCG
GACGTTCTGCCTAGTCTATGATTTTCTAGAGGGCGGCTCGCTGGCCGGGC
TGTTGAGGAATCGCAACCGGCCCTACGACTTGTTTTCCATTGCTTTAGAC
GTGGCGGAGGGCATGGACTACCTCCATCGACGAGGGGTCATGCACCGCGA
TCTCAAGCCCGATAACCTCCTCCTCAACAAGCAAGGGCGCGCCGTCATCG
CCGATTTCGGTCTTGTCTGCCCCACCATCTCCGAGGCTGACCATACAGGG
GAGACGGGCACTTACCGCTACATGTCTGCAGAGGTCATCCGTCACGAGCC
CTACTCCACCGCCGCCGATGTGTACTCGTACGGCATCGTCCTCTGGGAGC
TTCTGACGCGGGAGCAGCCGTTCAGAGGCATGACCCCCATCCAGGCTGCC
TTTGCGGTGGCGCGGCAGGGCCATCGCCCCGCCCCTCCCTCCTCGCACAC
CACCCAAGCTCGCGAAGCTCATCCAAATGTGCTGGCATGA

Synonyms

Publications