jgi.p|Nanoce1779_2|523492, mRNA_591 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523492
Unique NamemRNA_591
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length579
Alignment locationscaffold_3:1470642..1471220 -

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Properties
Property NameValue
TranscriptId523578
TrackFilteredModels2
ProteinId523492
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1470642..1471220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523492gene_591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_591CDS_591Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523492mRNA_591-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_591 ID=mRNA_591|Name=jgi.p|Nanoce1779_2|523492|organism=Nannochloropsis oceanica|type=mRNA|length=579bp
ATGGGGGACGCACACGATCAATTCTCAGGATTTGCGGGTCGATTCATTAC
CAGCATCCGCGGGGACGGTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCA
AGGCAACGGTCGAGACGACACTGAATTACGGCGCGCGGTTACGGGGGTTT
GTAGGTCTATTGTTGTTAGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGT
CGGCTTGCCGGCGATTGTGTTTCGACCTGCCAAGTTTGCCTTATGCGCGA
CAATGGGGAGTGTGTGCACGATGGGCAGTTTCTCGGTATTGGTCGGACCG
AAAGCCCACCTTCAGTCCCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGC
CGCCTACATCGGGTCTCTCATGTTCACCTTGTATGCGTCCTTGATCGTAA
GGAGTTATTTACTGGTCATTTTGTCCACTGTCGTCCAGATTGGAGCGTTT
GTGTGGTATCTGCTCGCTTTCCTTCCGGGGGGACCTGCGGGGCTACGGGT
GCTAGGTGGCATCATCGTGAAGGGGTTCACAGGGTGTGGTAGGACCATGA
CATGGTGCGTATCGAGCCTTGTGTCTTGA
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protein sequence of jgi.p|Nanoce1779_2|523492

>mRNA_591-protein ID=mRNA_591-protein|Name=jgi.p|Nanoce1779_2|523492|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MGDAHDQFSGFAGRFITSIRGDGEGNPGLVGGAKATVETTLNYGARLRGF
VGLLLLGVLFYLLAFFVGLPAIVFRPAKFALCATMGSVCTMGSFSVLVGP
KAHLQSLLVWERLPFTAAYIGSLMFTLYASLIVRSYLLVILSTVVQIGAF
VWYLLAFLPGGPAGLRVLGGIIVKGFTGCGRTMTWCVSSLVS*
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mRNA from alignment at scaffold_3:1470642..1471220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_591 ID=mRNA_591|Name=jgi.p|Nanoce1779_2|523492|organism=Nannochloropsis oceanica|type=mRNA|length=579bp|location=Sequence derived from alignment at scaffold_3:1470642..1471220- (Nannochloropsis oceanica)
ATGGGGGACGCACACGATCAATTCTCAGGATTTGCGGGTCGATTCATTAC
CAGCATCCGCGGGGACGGTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCA
AGGCAACGGTCGAGACGACACTGAATTACGGCGCGCGGTTACGGGGGTTT
GTAGGTCTATTGTTGTTAGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGT
CGGCTTGCCGGCGATTGTGTTTCGACCTGCCAAGTTTGCCTTATGCGCGA
CAATGGGGAGTGTGTGCACGATGGGCAGTTTCTCGGTATTGGTCGGACCG
AAAGCCCACCTTCAGTCCCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGC
CGCCTACATCGGGTCTCTCATGTTCACCTTGTATGCGTCCTTGATCGTAA
GGAGTTATTTACTGGTCATTTTGTCCACTGTCGTCCAGATTGGAGCGTTT
GTGTGGTATCTGCTCGCTTTCCTTCCGGGGGGACCTGCGGGGCTACGGGT
GCTAGGTGGCATCATCGTGAAGGGGTTCACAGGGTGTGGTAGGACCATGA
CATGGTGCGTATCGAGCCTTGTGTCTTGA
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Coding sequence (CDS) from alignment at scaffold_3:1470642..1471220-

>mRNA_591 ID=mRNA_591|Name=jgi.p|Nanoce1779_2|523492|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_3:1470642..1471220- (Nannochloropsis oceanica)
ATGGGGGACGCACACGATCAATTCTCAGGATTTGCGGGTCGATTCATTAC
CAGCATCCGCGGGGACGGTGAGGGGAACCCTGGTCTGGTGGGAGGCGCCA
AGGCAACGGTCGAGACGACACTGAATTACGGCGCGCGGTTACGGGGGTTT
GTAGGTCTATTGTTGTTAGGCGTGTTGTTTTATTTGTTGGCCTTCTTTGT
CGGCTTGCCGGCGATTGTGTTTCGACCTGCCAAGTTTGCCTTATGCGCGA
CAATGGGGAGTGTGTGCACGATGGGCAGTTTCTCGGTATTGGTCGGACCG
AAAGCCCACCTTCAGTCCCTCCTTGTTTGGGAGCGTTTGCCCTTTACGGC
CGCCTACATCGGGTCTCTCATGTTCACCTTGTATGCGTCCTTGATCGTAA
GGAGTTATTTACTGGTCATTTTGTCCACTGTCGTCCAGATTGGAGCGTTT
GTGTGGTATCTGCTCGCTTTCCTTCCGGGGGGACCTGCGGGGCTACGGGT
GCTAGGTGGCATCATCGTGAAGGGGTTCACAGGGTGTGGTAGGACCATGA
CATGGTGCGTATCGAGCCTTGTGTCTTGA
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Synonyms
Publications