jgi.p|Nanoce1779_2|671602, mRNA_5906 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671602
Unique NamemRNA_5906
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length674
Alignment locationscaffold_14:19280..20171 +

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Properties
Property NameValue
TranscriptId671688
TrackFilteredModels2
ProteinId671602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:19280..20171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671602gene_5906Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671602mRNA_5906-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5906CDS_5906Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5906 ID=mRNA_5906|Name=jgi.p|Nanoce1779_2|671602|organism=Nannochloropsis oceanica|type=mRNA|length=674bp
GCAGCAACAACATCAATAAAGTCATCACATCGTCGTCACCTCTCATTTTC
CTTCACCTCCTGCCTCTTCCACTTCCAGCCCCTGAACAACAGATGTATAT
CAATTAGACACGAGCCATGTCGAATCCGCCGTCAACTCACATTTTACGGG
ACCAAATCGGCCTGGCATTCGCCCCCGTCGAGAAGGCCATACACACCGTG
GCGAAGGCGCAAGGCCTGCGCGTCACCAAACCCGCCTGCGACCTGGTGAA
TGCCTTGTTGAGCGACTTCATTCTCCAGCTGTGCCATGCGGGAAACACAT
TGGAAGAGGAGGAGGTAGAGGATGAGGAAGAGGAGGACGACGAAGGCGAG
GAGGGAGGGCGGGCGAAGAAGAAACCTGCCGCCCCTAAGAGAAGTTCCTC
CAAAAAGGAAGCGGAAAGAGAAACAGGGAAAGGGGGAGGAGGTGGGGGAG
GAAGAAAGAGGAAAGGGAGCGGTCCGAAGACTAAGGAAGACGTGATGACA
GGAGGGAAAAGTGGGGGGGTTAAGCCAACAGCGAAGAAGCGTCGGCGAAA
AAAGATGAGTGCAGAGGAGGAGGCGGCATTAATGCGCGAACAAGAGGCAA
TCTTTGCACAGCATGCGGCCAAGGCGGTGGAGGGGGGAGAGAGAGGAGGA
GGAGGTGTAGGGGGGAGGTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|671602

>mRNA_5906-protein ID=mRNA_5906-protein|Name=jgi.p|Nanoce1779_2|671602|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MSNPPSTHILRDQIGLAFAPVEKAIHTVAKAQGLRVTKPACDLVNALLSD
FILQLCHAGNTLEEEEVEDEEEEDDEGEEGGRAKKKPAAPKRSSSKKEAE
RETGKGGGGGGGRKRKGSGPKTKEDVMTGGKSGGVKPTAKKRRRKKMSAE
EEAALMREQEAIFAQHAAKAVEGGERGGGGVGGRL*
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mRNA from alignment at scaffold_14:19280..20171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5906 ID=mRNA_5906|Name=jgi.p|Nanoce1779_2|671602|organism=Nannochloropsis oceanica|type=mRNA|length=892bp|location=Sequence derived from alignment at scaffold_14:19280..20171+ (Nannochloropsis oceanica)
GCAGCAACAACATCAATAAAGTCATCACATCGTCGTCACCTCTCATTTTC
CTTCACCTCCTGCCTCTTCCACTTCCAGCCCCTGAACAACAGATGTATAT
CAATTAGACACGAGCCATGTCGAATCCGCCGTCAACTCACATTTTACGGG
ACCAAATCGGCCTGGCATTCGCCCCCGTCGAGAAGGCCATACACACCGTG
GCGAAGGCGCAAGGCCTGCGCGTCACCAAACCCGCCTGCGACCTGGTGAA
TGCCTTGTTGAGCGGTAAGTGAGTTAAAATGAGAGGGAGGGTACGAAGGC
GAGGAGGGTGATAAAGAAGGTAGAGAGGTGGATGCAAGTATGTGACTGAA
TCCGCAGGACATCATTCTTTCCTTCCCTTCCCCCCCTCCCCCCCTCCAGA
CTTCATTCTCCAGCTGTGCCATGCGGGAAACACATTGGAAGTAAAAAAGA
AGGTCATCAGCGCAGAATGTATCGAAAAGGGACTGAAGAAGCTATCTGGG
CATTTATCGTTGTCAACAAAAAGGAGGAGGAGGTAGAGGATGAGGAAGAG
GAGGACGACGAAGGCGAGGAGGGAGGGCGGGCGAAGAAGAAACCTGCCGC
CCCTAAGAGAAGTTCCTCCAAAAAGGAAGCGGAAAGAGAAACAGGGAAAG
GGGGAGGAGGTGGGGGAGGAAGAAAGAGGAAAGGGAGCGGTCCGAAGACT
AAGGAAGACGTGATGACAGGAGGGAAAAGTGGGGGGGTTAAGCCAACAGC
GAAGAAGCGTCGGCGAAAAAAGATGAGTGCAGAGGAGGAGGCGGCATTAA
TGCGCGAACAAGAGGCAATCTTTGCACAGCATGCGGCCAAGGCGGTGGAG
GGGGGAGAGAGAGGAGGAGGAGGTGTAGGGGGGAGGTTGTGA
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Coding sequence (CDS) from alignment at scaffold_14:19280..20171+

>mRNA_5906 ID=mRNA_5906|Name=jgi.p|Nanoce1779_2|671602|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_14:19280..20171+ (Nannochloropsis oceanica)
ATGTCGAATCCGCCGTCAACTCACATTTTACGGGACCAAATCGGCCTGGC
ATTCGCCCCCGTCGAGAAGGCCATACACACCGTGGCGAAGGCGCAAGGCC
TGCGCGTCACCAAACCCGCCTGCGACCTGGTGAATGCCTTGTTGAGCGAC
TTCATTCTCCAGCTGTGCCATGCGGGAAACACATTGGAAGAGGAGGAGGT
AGAGGATGAGGAAGAGGAGGACGACGAAGGCGAGGAGGGAGGGCGGGCGA
AGAAGAAACCTGCCGCCCCTAAGAGAAGTTCCTCCAAAAAGGAAGCGGAA
AGAGAAACAGGGAAAGGGGGAGGAGGTGGGGGAGGAAGAAAGAGGAAAGG
GAGCGGTCCGAAGACTAAGGAAGACGTGATGACAGGAGGGAAAAGTGGGG
GGGTTAAGCCAACAGCGAAGAAGCGTCGGCGAAAAAAGATGAGTGCAGAG
GAGGAGGCGGCATTAATGCGCGAACAAGAGGCAATCTTTGCACAGCATGC
GGCCAAGGCGGTGGAGGGGGGAGAGAGAGGAGGAGGAGGTGTAGGGGGGA
GGTTGTGAATGTCGAATCCGCCGTCAACTCACATTTTACGGGACCAAATC
GGCCTGGCATTCGCCCCCGTCGAGAAGGCCATACACACCGTGGCGAAGGC
GCAAGGCCTGCGCGTCACCAAACCCGCCTGCGACCTGGTGAATGCCTTGT
TGAGCGACTTCATTCTCCAGCTGTGCCATGCGGGAAACACATTGGAAGAG
GAGGAGGTAGAGGATGAGGAAGAGGAGGACGACGAAGGCGAGGAGGGAGG
GCGGGCGAAGAAGAAACCTGCCGCCCCTAAGAGAAGTTCCTCCAAAAAGG
AAGCGGAAAGAGAAACAGGGAAAGGGGGAGGAGGTGGGGGAGGAAGAAAG
AGGAAAGGGAGCGGTCCGAAGACTAAGGAAGACGTGATGACAGGAGGGAA
AAGTGGGGGGGTTAAGCCAACAGCGAAGAAGCGTCGGCGAAAAAAGATGA
GTGCAGAGGAGGAGGCGGCATTAATGCGCGAACAAGAGGCAATCTTTGCA
CAGCATGCGGCCAAGGCGGTGGAGGGGGGAGAGAGAGGAGGAGGAGGTGT
AGGGGGGAGGTTGTGAATGTCGAATCCGCCGTCAACTCACATTTTACGGG
ACCAAATCGGCCTGGCATTCGCCCCCGTCGAGAAGGCCATACACACCGTG
GCGAAGGCGCAAGGCCTGCGCGTCACCAAACCCGCCTGCGACCTGGTGAA
TGCCTTGTTGAGCGACTTCATTCTCCAGCTGTGCCATGCGGGAAACACAT
TGGAAGAGGAGGAGGTAGAGGATGAGGAAGAGGAGGACGACGAAGGCGAG
GAGGGAGGGCGGGCGAAGAAGAAACCTGCCGCCCCTAAGAGAAGTTCCTC
CAAAAAGGAAGCGGAAAGAGAAACAGGGAAAGGGGGAGGAGGTGGGGGAG
GAAGAAAGAGGAAAGGGAGCGGTCCGAAGACTAAGGAAGACGTGATGACA
GGAGGGAAAAGTGGGGGGGTTAAGCCAACAGCGAAGAAGCGTCGGCGAAA
AAAGATGAGTGCAGAGGAGGAGGCGGCATTAATGCGCGAACAAGAGGCAA
TCTTTGCACAGCATGCGGCCAAGGCGGTGGAGGGGGGAGAGAGAGGAGGA
GGAGGTGTAGGGGGGAGGTTGTGA
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Synonyms
Publications