jgi.p|Nanoce1779_2|593079, mRNA_5905 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593079
Unique Name	mRNA_5905
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2514
Alignment location	scaffold_14:16278..18791 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593165
Track	FilteredModels2
ProteinId	593079

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:16278..18791 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593079	gene_5905	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593079	mRNA_5905-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5905	CDS_5905	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:16278..18791-
coding sequence from alignment at scaffold_14:16278..18791-

mRNA sequence

>mRNA_5905 ID=mRNA_5905|Name=jgi.p|Nanoce1779_2|593079|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp
ACAGCTAGTAAATCATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCT
TCCTTGCCCCCCACGCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCG
ACGGCGGAGCAGTGGCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCT
TGACCGGGAGGAAATGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATT
GTCACCTTGTTCGTGTGGATCAGCAACCTCATCACCTTCCTATCAGGCTA
CGGTAAATTCAAGGCTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGC
TGCAACGCCCCAAGAGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGC
AAACAAATATGGGCCCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGC
CTATACACGCCAACACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAG
CCTTGTACTATTGGGGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGC
CTCCGCAATTCCAAGGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCAT
CTATCTCCCATTCGCCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCG
TCAATCTGACCGCCATGCTCACGATCGACTACCCCCACACACACCCCTAC
CTGGTCGGTGCCGTTGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGG
TATGTACGCTATCCTGGCCCACGACTGCCACATCACCCTCGCTTGGAGCA
TCTGGGGTCTCAAAGGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTG
TTCCGTTCCCTCCCTACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTC
CCTCACGGGGTATATCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTG
CTGGCACTTCTGCTACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGT
GCGGCGCTTTTCCTGGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTA
TGTGGATGGCGTGGCAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGA
AGCAGGTGGAAGATGCGTTCCATGCCACAGTCACTCGGTGCCACTATCAT
CAGATCTCCATCTACACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTT
CCCTTTCTTCTCCTCGAAACAGGCCAAGTCCACTCCTGCTGCTGCTCCTG
CTGGTGTAGCTGTGGCTACTGCTCCCCCGCCGGCGAAGGAAGAGATTGTC
AATGCTGCCGTGGCCACGGGCTCAGGAATTCTGAGCACCATCCCAGAAGG
CGAGGAGGAGAAAGAGACCACCAGCACCAACACTTCCTCCTCATCATCGG
AAAAACCCCGATCCTCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTC
ATTGTCCCATTTTTCGTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCAC
CCTCCTCTTTCTCACCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCC
TCCAAGTCGGAGAGAGACTCCGCTACCGCTGCAGCATGCACCTCTACCTC
TCCTCCCCTTCCTCGTCCTCCCCCTCCACCTCCTGTCAAGATTTGGACCT
GGTGCTGGGGAAGGACGGAGTGCTCTCCCTCTTCCGTGACCGGCGAGTGG
GCGAGGAGTCAGCCTTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCT
TATACAGCCACGGTGAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGA
GGGGGAGGTGGTGTGGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAG
GGAAGGAGGGAAGGGAGGAGGGAGGGGGGGGCGATGTTCGTCGATGGTTT
GTTGGGCGGCATGTATATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGA
CGTCATGGTAAAGGGAGATGGAGAGAGGGAGAGAAAAGGCGATGGAATCG
CATCTTTCCTTTGACTCGCTGTCATCACGCATGAGACGGCAATTTTGACA
TCATTTTAAACTTCAGTTCGTTTTATAATCAGGCGCGAGAGATTTAGGGC
GATTGCATGGTGCCCTACTACAGGCACAGGTCCCACCCACTTTTATTTAT
ATCCTCATATCTACTTGGACGATGAAGAAGGAGAAAAAGAGGACGGAGAA
GAAGGAGGAAAGGGGAGTATACATATATGGACATAGGATCAACTGTCGTC
GCAATTTTATTCAGTCAGCTTCTTTCCTCCCTTTTCCCCCTCCTCTTACG
TTGCCTGGACGGTAGCGGGAGCAGAGCAGAAGGAAGAGATCAGCGAGGAG
AAGATATGAAGAGGAAGCCAAGAGGGGGAGGGATGAACGTTTTTGAAGTG
CATGGATGATTTTGCATGAGAGAAGGCTGATTAAAACATGAAGAACAAGA
AAAGAAAAAGAAGACCAGAAAGTCGAAGAAGAAGAGAAGTAGGGGGGAAG
AGGGGAATGAGAGCCGCCTCCCACAAATCGAACGAAAAGCAAATAAAGCG
CGAAAAAGGTTGGA

protein sequence of jgi.p|Nanoce1779_2|593079

>mRNA_5905-protein ID=mRNA_5905-protein|Name=jgi.p|Nanoce1779_2|593079|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEHISTASPLSSSLPPTPTTSSSMGSPYRRRSSGSSPIRRRTKPPLTGRK
WFLHQLSRCQGIVTLFVWISNLITFLSGYGKFKALRWVDAPFVLWLQRPK
SMAHQFVTHGLGKQIWAPMLAVEMLYAWAYTRQHLVLTRALLVPLALYYW
GVFNRIASAEQRLRNSKGKVISWEEYLCIYLPFAIKSGFLSASACVNLTA
MLTIDYPHTHPYLVGAVAYSSQLGLVVLGMYAILAHDCHITLAWSIWGLK
GQPVPMSIVPYVFRSLPTLLLFVVRAYKSLTGYIKNWATAAAATAAGTSA
TASKVSHTAGGRAALFLADVEGLENVSGYVDGVARRAGQRLESVEKQVED
AFHATVTRCHYHQISIYTTFWDFCSSPVFPFFSSKQAKSTPAAAPAGVAV
ATAPPPAKEEIVNAAVATGSGILSTIPEGEEEKETTSTNTSSSSSEKPRS
SLPSPSLPFYLLIVPFFVLSFLLSASFFTLLFLTPPRSVLPHGEVLQVGE
RLRYRCSMHLYLSSPSSSSPSTSCQDLDLVLGKDGVLSLFRDRRVGEESA
LVWQSKGGEEGAYTATVNERSRLVVTSAEGEVVWASPRLVGVGEEGKEGR
EEGGGGDVRRWFVGRHVYQGCGGRADVCDVMV

mRNA from alignment at scaffold_14:16278..18791-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5905 ID=mRNA_5905|Name=jgi.p|Nanoce1779_2|593079|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp|location=Sequence derived from alignment at scaffold_14:16278..18791- (Nannochloropsis oceanica)
ACAGCTAGTAAATCATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCT
TCCTTGCCCCCCACGCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCG
ACGGCGGAGCAGTGGCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCT
TGACCGGGAGGAAATGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATT
GTCACCTTGTTCGTGTGGATCAGCAACCTCATCACCTTCCTATCAGGCTA
CGGTAAATTCAAGGCTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGC
TGCAACGCCCCAAGAGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGC
AAACAAATATGGGCCCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGC
CTATACACGCCAACACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAG
CCTTGTACTATTGGGGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGC
CTCCGCAATTCCAAGGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCAT
CTATCTCCCATTCGCCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCG
TCAATCTGACCGCCATGCTCACGATCGACTACCCCCACACACACCCCTAC
CTGGTCGGTGCCGTTGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGG
TATGTACGCTATCCTGGCCCACGACTGCCACATCACCCTCGCTTGGAGCA
TCTGGGGTCTCAAAGGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTG
TTCCGTTCCCTCCCTACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTC
CCTCACGGGGTATATCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTG
CTGGCACTTCTGCTACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGT
GCGGCGCTTTTCCTGGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTA
TGTGGATGGCGTGGCAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGA
AGCAGGTGGAAGATGCGTTCCATGCCACAGTCACTCGGTGCCACTATCAT
CAGATCTCCATCTACACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTT
CCCTTTCTTCTCCTCGAAACAGGCCAAGTCCACTCCTGCTGCTGCTCCTG
CTGGTGTAGCTGTGGCTACTGCTCCCCCGCCGGCGAAGGAAGAGATTGTC
AATGCTGCCGTGGCCACGGGCTCAGGAATTCTGAGCACCATCCCAGAAGG
CGAGGAGGAGAAAGAGACCACCAGCACCAACACTTCCTCCTCATCATCGG
AAAAACCCCGATCCTCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTC
ATTGTCCCATTTTTCGTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCAC
CCTCCTCTTTCTCACCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCC
TCCAAGTCGGAGAGAGACTCCGCTACCGCTGCAGCATGCACCTCTACCTC
TCCTCCCCTTCCTCGTCCTCCCCCTCCACCTCCTGTCAAGATTTGGACCT
GGTGCTGGGGAAGGACGGAGTGCTCTCCCTCTTCCGTGACCGGCGAGTGG
GCGAGGAGTCAGCCTTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCT
TATACAGCCACGGTGAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGA
GGGGGAGGTGGTGTGGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAG
GGAAGGAGGGAAGGGAGGAGGGAGGGGGGGGCGATGTTCGTCGATGGTTT
GTTGGGCGGCATGTATATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGA
CGTCATGGTAAAGGGAGATGGAGAGAGGGAGAGAAAAGGCGATGGAATCG
CATCTTTCCTTTGACTCGCTGTCATCACGCATGAGACGGCAATTTTGACA
TCATTTTAAACTTCAGTTCGTTTTATAATCAGGCGCGAGAGATTTAGGGC
GATTGCATGGTGCCCTACTACAGGCACAGGTCCCACCCACTTTTATTTAT
ATCCTCATATCTACTTGGACGATGAAGAAGGAGAAAAAGAGGACGGAGAA
GAAGGAGGAAAGGGGAGTATACATATATGGACATAGGATCAACTGTCGTC
GCAATTTTATTCAGTCAGCTTCTTTCCTCCCTTTTCCCCCTCCTCTTACG
TTGCCTGGACGGTAGCGGGAGCAGAGCAGAAGGAAGAGATCAGCGAGGAG
AAGATATGAAGAGGAAGCCAAGAGGGGGAGGGATGAACGTTTTTGAAGTG
CATGGATGATTTTGCATGAGAGAAGGCTGATTAAAACATGAAGAACAAGA
AAAGAAAAAGAAGACCAGAAAGTCGAAGAAGAAGAGAAGTAGGGGGGAAG
AGGGGAATGAGAGCCGCCTCCCACAAATCGAACGAAAAGCAAATAAAGCG
CGAAAAAGGTTGGA

Coding sequence (CDS) from alignment at scaffold_14:16278..18791-

>mRNA_5905 ID=mRNA_5905|Name=jgi.p|Nanoce1779_2|593079|organism=Nannochloropsis oceanica|type=CDS|length=1897bp|location=Sequence derived from alignment at scaffold_14:16278..18791- (Nannochloropsis oceanica)
ATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCTTCCTTGCCCCCCAC
GCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCGACGGCGGAGCAGTG
GCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCTTGACCGGGAGGAAA
TGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATTGTCACCTTGTTCGT
GTGGATCAGCAACCTCATCACCTTCCTATCAGGCTACGGTAAATTCAAGG
CTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGCTGCAACGCCCCAAG
AGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGCAAACAAATATGGGC
CCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGCCTATACACGCCAAC
ACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAGCCTTGTACTATTGG
GGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGCCTCCGCAATTCCAA
GGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCATCTATCTCCCATTCG
CCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCGTCAATCTGACCGCC
ATGCTCACGATCGACTACCCCCACACACACCCCTACCTGGTCGGTGCCGT
TGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGGTATGTACGCTATCC
TGGCCCACGACTGCCACATCACCCTCGCTTGGAGCATCTGGGGTCTCAAA
GGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTGTTCCGTTCCCTCCC
TACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTCCCTCACGGGGTATA
TCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTGCTGGCACTTCTGCT
ACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGTGCGGCGCTTTTCCT
GGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTATGTGGATGGCGTGG
CAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGAAGCAGGTGGAAGAT
GCGTTCCATGCCACAGTCACTCGGTGCCACTATCATCAGATCTCCATCTA
CACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTTCCCTTTCTTCTCCT
CGAAACAGGCCAAGTCCACTCCTGCTGCTGCTCCTGCTGGTGTAGCTGTG
GCTACTGCTCCCCCGCCGGCGAAGGAAGAGATTGTCAATGCTGCCGTGGC
CACGGGCTCAGGAATTCTGAGCACCATCCCAGAAGGCGAGGAGGAGAAAG
AGACCACCAGCACCAACACTTCCTCCTCATCATCGGAAAAACCCCGATCC
TCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTCATTGTCCCATTTTT
CGTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCACCCTCCTCTTTCTCA
CCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCCTCCAAGTCGGAGAG
AGACTCCGCTACCGCTGCAGCATGCACCTCTACCTCTCCTCCCCTTCCTC
GTCCTCCCCCTCCACCTCCTGTCAAGATTTGGACCTGGTGCTGGGGAAGG
ACGGAGTGCTCTCCCTCTTCCGTGACCGGCGAGTGGGCGAGGAGTCAGCC
TTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCTTATACAGCCACGGT
GAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGAGGGGGAGGTGGTGT
GGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAGGGAAGGAGGGAAGG
GAGGAGGGAGGGGGGGGCGATGTTCGTCGATGGTTTGTTGGGCGGCATGT
ATATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGACGTCATGGTAA

Synonyms

Publications