jgi.p|Nanoce1779_2|576076, mRNA_59 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576076
Unique Name	mRNA_59
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2866
Alignment location	scaffold_3:165801..168693 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576162
Track	FilteredModels2
ProteinId	576076

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:165801..168693 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576076	gene_59	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576076	mRNA_59-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_59	CDS_59	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:165801..168693+
coding sequence from alignment at scaffold_3:165801..168693+

mRNA sequence

>mRNA_59 ID=mRNA_59|Name=jgi.p|Nanoce1779_2|576076|organism=Nannochloropsis oceanica|type=mRNA|length=2866bp
GGAAATCTTCTCCTGGGCGGGTGACTCGAAGTGGGGGCAGCGGGGAAGGA
GGAGGAGGAGGGGGGGATGAAGTGATGAGTGACCCACTTTTAATGTGGGA
GTACGTCAAGGAGGCACTGAGTGATCCGAGCATGAAGGGGGGAAACCTTG
CTGACATCCAAGCGTACATCCAGGCCAAGCACGGGCACAGCGCGCGTCAG
ACACGTAAGTGTCTCAATACGGCCATTGAGAAAGCCGTGAGCGATAAACG
GATCGAGAAGCTTGGGCGACATTATCGCATTAGGGTTGGTAATGAATTTA
AACCGTCGGCTTTTAAAGTGGCGACGAGCGAGGCCATCAGGGGCGTGGAA
GGAGCGTTGAAGATGAAGGAGGTAGAGGAGCAGCAGCATCAACAACAAGA
CCAACAGCAGCAGCAGTATGACGAAAAGTCTCATCAGCAGCACTTGCAGG
TGCAGCGGATGGATCATGTGCCGGAAGGGAGGCCAGGAAAGATTATGGGT
GGGGCTGATCCCCTTGCACCGGAAGAAGGAGGGGCGATAGATATGAGCAG
GAGCACGAGCACCAGCGGGGGCACAGCTGCAGCAGATACTGCTGGTACCT
CGTCCTCTTCAACAACTGTTGCTCCTTTTGACGCCCATCCTCCTCCGCCA
GCCACTGACCCTTCATCGGCTGCTGCAGAAGCAGGTGTCGCCGCGGCCAA
TGGAGCAGGGGCAGCAGCTGCTTATGGGCATTACTCTCCGTCTCAGTACG
CCGCGCATTATGCAGCAATCGCTCAACACACACAGCAACAGCACCAACAG
CAGCATTACCATTATCCGGGCTATGGCACCTACTCCTATCCGTCCCCCTA
TGCCTCCTATCCGTACTCCACCGCCGCCGCCCCCTCAGGCACCGACCCAG
GAGCAGGCGCTGGAGCAGCAGCAGCAGCAGCCGCATCAGCTACTGCGTAT
GGTTATCATCCATCGTACGCTCATCCTGCTTACGGGGGGTTCGCGGGAAG
CTACCCCGGCGGCAGCTACGTGCACCCTGCCTATGGATACAATGCCGGGT
ACTCACCCTACACCACCTCGGCAATCTCAGCAGAAGCATACAGCAACTAC
TACTACCAGCAGCAGCAACAGCAGCAACAGGCTGCTGCTGCCGCCGCCGC
CGCAGCAGCTTCAGCAACAACAACGCGTGAGCAGCAGTACAAGCAGTCGG
CAGGAGACAGGCGTCAGCAGCAGGAGTCTTTTTCGAGCTTGACAGCCCCC
TCTCCTCCTCATCTGACCGTACCAGCCTCTTCCCGTGCTGCTTCGTCAGA
AGAGAAAGGAAGAGGAGGTGAAGGAGGATGTGGTGATATTCAAACGGGCA
GTCCAAGGGGGGGAGCGATGACTAGTCTGGCTGCTGCATTGGGGGAGGGC
AGCGTCGAGGAAATGGATGCTCGAGGGAGGGAAGGAGGGAAAGGCAGGGA
TAATCGGTCGCTGGAGCTGAAGATGTTTGATGGGGCGAATGTGGGGGCCT
TAAATCAGTTGGCGAGAGAGAATGAGGCGAGGCTTGCAAAGAGGAGGGAG
AGGGAGAAGGTGCAGCGGCAGGAGAAGAAGGCCAAGCAAAAGAAGGCTAT
TCAGTCCTCGGTCATGTCGGCGGCGGCGATAGGTGCATTGAGAGGAGGGA
CAGAGGCAGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGAGGAAGGAAGGG
GAAGGGGAGGAAGGATGGGATGGCACCTCATCGTCGGTGGCGCTGCCTGT
CCCCCCATTTATTCCGGGTCGGCTTGTCTCGACTGAGGAGGCGTGGGAGG
CGGAGGAGAAGAGGCAATCCGTAGTGCGTGACGATTCGAACCTCTCTGGA
GACAAGGGGAGGGTGGAGCAGGAGCCGAGGAAGCAGGAGAGGAAGGAGGC
GAAGGCGAGATATGGGGGGGGGCACAGGCAATCGACCGAGGAGGGGGAGA
GGGATCCCGAGTCGAAGAAGAGGAATGCTGTCACGGGTGTTGCTGCTGGA
GCGATGGTGACGGATGAGGCAAGTACAGCGGTGCTAGGCATTGGCACGGA
TGAGGGGTCAGGAGGGGGAGGAGGGAAGAAACGGTCGACCACGCCAACGG
CTCTGTCGGTATCCTCCCCTCGCTCTGCCAGCGGGGGGGGAGGGAAGAAA
AAGCCTCTTATTTCCTCGGAGGAGAAGATGTCATTGACCGATGCTCAGCG
CGCGGAAAAGATGGAGGAGATCAAGAAGTGGGAAAACGAATTCCGCAAGG
CAAAGAAGGGGTTTGCTGAGATACAGGAGGTGGTGATGGAATTGAGGCAA
GCGAGGGAGAAAGAGGCGGCGGAATTGAATGATCTAAAACGACGGTGGTT
GCAGAGTCAGACGCGGTTCGCCAACTACCACAGACTGAAAGAGGAGTCTC
TTCTACCGGGCGTAAAGGACGATTTGGATGTGATCGTCGCCGAGGCACGC
AAGAAAAAGGGCCAAGCAGCAGCAGTAGCAGGTGGCAGTGGTGGTGGTGG
TGGTGGACTCCGTGTGGCTTCTGCGGCGCCTGGGGGACTCTTATCCGTTA
CCCCCCCTTCCCTCATTTTATCAACGCCTCGGTTGCCCTCCCGCACCGTC
CCGGACCTGTTGGAAGTGACCCATTTCGTGCGCCAGCTGGCCAAGCCGCT
CTCCGTCGAAGCTTTTCCTCTCATCCACCTCCTTCGGGCCTTGACGGAAG
GTGACGAAATTACGGAGGGCGTGGAAGGGGAGGGAAGGAGGGAAGGCAAT
AGCTGTGTGCTGATGCGTGAGTTCAGTGAGGTACCTGCTCCACTGCCCCC
CTTCTCTACGCGTGGGGGGCCAAAGAGTTTGGACGTAGGCGCGCCTCCTC
CCTTCTTCCTCTCTCG

protein sequence of jgi.p|Nanoce1779_2|576076

>mRNA_59-protein ID=mRNA_59-protein|Name=jgi.p|Nanoce1779_2|576076|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MEQGQQLLMGITLRLSTPRIMQQSLNTHSNSTNSSITIIRAMAPTPIRPP
MPPIRTPPPPPPQAPTQEQALEQQQQQPHQLLRMVIIHRTLILLTGGSRE
ATPAAATCTLPMDTMPGTHPTPPRQSQQKHTATTTTSSSNSSNRLLLPPP
PQQLQQQQRVSSSTSSRQETGVSSRSLFRA*

mRNA from alignment at scaffold_3:165801..168693+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_59 ID=mRNA_59|Name=jgi.p|Nanoce1779_2|576076|organism=Nannochloropsis oceanica|type=mRNA|length=2893bp|location=Sequence derived from alignment at scaffold_3:165801..168693+ (Nannochloropsis oceanica)
GGAAATCTTCTCCTGGGCGGGTGACTCGAAGTGGGGGCAGCGGGGAAGGA
GGAGGAGGAGGGGGGGATGAAGTGATGAGTGACCCACTTTTAATGTGGGA
GTACGTCAAGGAGGCACTGAGTGATCCGAGCATGAAGGGGGGAAACCTTG
CTGACATCCAAGCGTACATCCAGGCCAAGCACGGGCACAGCGCGCGTCAG
ACACGTAAGTGTCTCAATACGGCCATTGAGAAAGCCGTGAGCGATAAACG
GATCGAGAAGCTTGGGCGACATTATCGCATTAGGGTTGGTAATGAATTTA
AACCGTCGGCTTTTAAAGTGGCGACGAGCGAGGCCATCAGGGGCGTGGAA
GGAGCGTTGAAGATGAAGGAGGTAGAGGAGCAGCAGCATCAACAACAAGA
CCAACAGCAGCAGCAGTATGACGAAAAGTCTCATCAGCAGCACTTGCAGG
TGCAGCGGATGGATCATGTGCCGGAAGGGAGGCCAGGAAAGATTATGGGT
GGGGCTGATCCCCTTGCACCGGAAGAAGGAGGGGCGATAGATATGAGCAG
GAGCACGAGCACCAGCGGGGGCACAGCTGCAGCAGATACTGCTGGTACCT
CGTCCTCTTCAACAACTGTTGCTCCTTTTGACGCCCATCCTCCTCCGCCA
GCCACTGACCCTTCATCGGCTGCTGCAGAAGCAGGTGTCGCCGCGGCCAA
TGGAGCAGGGGCAGCAGCTGCTTATGGGCATTACTCTCCGTCTCAGTACG
CCGCGCATTATGCAGCAATCGCTCAACACACACAGCAACAGCACCAACAG
CAGCACCAACAGCAACAGCACCAACAGCAGCATTACCATTATCCGGGCTA
TGGCACCTACTCCTATCCGTCCCCCTATGCCTCCTATCCGTACTCCACCG
CCGCCGCCCCCTCAGGCACCGACCCAGGAGCAGGCGCTGGAGCAGCAGCA
GCAGCAGCCGCATCAGCTACTGCGTATGGTTATCATCCATCGTACGCTCA
TCCTGCTTACGGGGGGTTCGCGGGAAGCTACCCCGGCGGCAGCTACGTGC
ACCCTGCCTATGGATACAATGCCGGGTACTCACCCTACACCACCTCGGCA
ATCTCAGCAGAAGCATACAGCAACTACTACTACCAGCAGCAGCAACAGCA
GCAACAGGCTGCTGCTGCCGCCGCCGCCGCAGCAGCTTCAGCAACAACAA
CGCGTGAGCAGCAGTACAAGCAGTCGGCAGGAGACAGGCGTCAGCAGCAG
GAGTCTTTTTCGAGCTTGACAGCCCCCTCTCCTCCTCATCTGACCGTACC
AGCCTCTTCCCGTGCTGCTTCGTCAGAAGAGAAAGGAAGAGGAGGTGAAG
GAGGATGTGGTGATATTCAAACGGGCAGTCCAAGGGGGGGAGCGATGACT
AGTCTGGCTGCTGCATTGGGGGAGGGCAGCGTCGAGGAAATGGATGCTCG
AGGGAGGGAAGGAGGGAAAGGCAGGGATAATCGGTCGCTGGAGCTGAAGA
TGTTTGATGGGGCGAATGTGGGGGCCTTAAATCAGTTGGCGAGAGAGAAT
GAGGCGAGGCTTGCAAAGAGGAGGGAGAGGGAGAAGGTGCAGCGGCAGGA
GAAGAAGGCCAAGCAAAAGAAGGCTATTCAGTCCTCGGTCATGTCGGCGG
CGGCGATAGGTGCATTGAGAGGAGGGACAGAGGCAGAGGAGGAGGAGGAG
CAGCAGCAGCAGCAGAGGAAGGAAGGGGAAGGGGAGGAAGGATGGGATGG
CACCTCATCGTCGGTGGCGCTGCCTGTCCCCCCATTTATTCCGGGTCGGC
TTGTCTCGACTGAGGAGGCGTGGGAGGCGGAGGAGAAGAGGCAATCCGTA
GTGCGTGACGATTCGAACCTCTCTGGAGACAAGGGGAGGGTGGAGCAGGA
GCCGAGGAAGCAGGAGAGGAAGGAGGCGAAGGCGAGATATGGGGGGGGGC
ACAGGCAATCGACCGAGGAGGGGGAGAGGGATCCCGAGTCGAAGAAGAGG
AATGCTGTCACGGGTGTTGCTGCTGGAGCGATGGTGACGGATGAGGCAAG
TACAGCGGTGCTAGGCATTGGCACGGATGAGGGGTCAGGAGGGGGAGGAG
GGAAGAAACGGTCGACCACGCCAACGGCTCTGTCGGTATCCTCCCCTCGC
TCTGCCAGCGGGGGGGGAGGGAAGAAAAAGCCTCTTATTTCCTCGGAGGA
GAAGATGTCATTGACCGATGCTCAGCGCGCGGAAAAGATGGAGGAGATCA
AGAAGTGGGAAAACGAATTCCGCAAGGCAAAGAAGGGGTTTGCTGAGATA
CAGGAGGTGGTGATGGAATTGAGGCAAGCGAGGGAGAAAGAGGCGGCGGA
ATTGAATGATCTAAAACGACGGTGGTTGCAGAGTCAGACGCGGTTCGCCA
ACTACCACAGACTGAAAGAGGAGTCTCTTCTACCGGGCGTAAAGGACGAT
TTGGATGTGATCGTCGCCGAGGCACGCAAGAAAAAGGGCCAAGCAGCAGC
AGTAGCAGGTGGCAGTGGTGGTGGTGGTGGTGGACTCCGTGTGGCTTCTG
CGGCGCCTGGGGGACTCTTATCCGTTACCCCCCCTTCCCTCATTTTATCA
ACGCCTCGGTTGCCCTCCCGCACCGTCCCGGACCTGTTGGAAGTGACCCA
TTTCGTGCGCCAGCTGGCCAAGCCGCTCTCCGTCGAAGCTTTTCCTCTCA
TCCACCTCCTTCGGGCCTTGACGGAAGGTGACGAAATTACGGAGGGCGTG
GAAGGGGAGGGAAGGAGGGAAGGCAATAGCTGTGTGCTGATGCGTGAGTT
CAGTGAGGTACCTGCTCCACTGCCCCCCTTCTCTACGCGTGGGGGGCCAA
AGAGTTTGGACGTAGGCGCGCCTCCTCCCTTCTTCCTCTCTCG

Coding sequence (CDS) from alignment at scaffold_3:165801..168693+

>mRNA_59 ID=mRNA_59|Name=jgi.p|Nanoce1779_2|576076|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_3:165801..168693+ (Nannochloropsis oceanica)
ATGGAGCAGGGGCAGCAGCTGCTTATGGGCATTACTCTCCGTCTCAGTAC
GCCGCGCATTATGCAGCAATCGCTCAACACACACAGCAACAGCACCAACA
GCAGCATTACCATTATCCGGGCTATGGCACCTACTCCTATCCGTCCCCCT
ATGCCTCCTATCCGTACTCCACCGCCGCCGCCCCCTCAGGCACCGACCCA
GGAGCAGGCGCTGGAGCAGCAGCAGCAGCAGCCGCATCAGCTACTGCGTA
TGGTTATCATCCATCGTACGCTCATCCTGCTTACGGGGGGTTCGCGGGAA
GCTACCCCGGCGGCAGCTACGTGCACCCTGCCTATGGATACAATGCCGGG
TACTCACCCTACACCACCTCGGCAATCTCAGCAGAAGCATACAGCAACTA
CTACTACCAGCAGCAGCAACAGCAGCAACAGGCTGCTGCTGCCGCCGCCG
CCGCAGCAGCTTCAGCAACAACAACGCGTGAGCAGCAGTACAAGCAGTCG
GCAGGAGACAGGCGTCAGCAGCAGGAGTCTTTTTCGAGCTTGAATGGAGC
AGGGGCAGCAGCTGCTTATGGGCATTACTCTCCGTCTCAGTACGCCGCGC
ATTATGCAGCAATCGCTCAACACACACAGCAACAGCACCAACAGCAGCAT
TACCATTATCCGGGCTATGGCACCTACTCCTATCCGTCCCCCTATGCCTC
CTATCCGTACTCCACCGCCGCCGCCCCCTCAGGCACCGACCCAGGAGCAG
GCGCTGGAGCAGCAGCAGCAGCAGCCGCATCAGCTACTGCGTATGGTTAT
CATCCATCGTACGCTCATCCTGCTTACGGGGGGTTCGCGGGAAGCTACCC
CGGCGGCAGCTACGTGCACCCTGCCTATGGATACAATGCCGGGTACTCAC
CCTACACCACCTCGGCAATCTCAGCAGAAGCATACAGCAACTACTACTAC
CAGCAGCAGCAACAGCAGCAACAGGCTGCTGCTGCCGCCGCCGCCGCAGC
AGCTTCAGCAACAACAACGCGTGAGCAGCAGTACAAGCAGTCGGCAGGAG
ACAGGCGTCAGCAGCAGGAGTCTTTTTCGAGCTTGA

Synonyms

Publications