jgi.p|Nanoce1779_2|590766, mRNA_5899 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590766
Unique NamemRNA_5899
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1058
Alignment locationscaffold_11:892782..894301 -

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Properties
Property NameValue
TranscriptId590852
TrackFilteredModels2
ProteinId590766
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:892782..894301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590766gene_5899Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590766mRNA_5899-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5899CDS_5899Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5899 ID=mRNA_5899|Name=jgi.p|Nanoce1779_2|590766|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp
CAGGCACGAATCCCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATG
ACCGGGGCAGAGGAAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCAT
CACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGCGAGATTCGCCAGG
TACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTT
ATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGCCGC
AAAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGA
ACATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTA
GATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCTCCAAGTT
CCACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGTCAATG
TGCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCC
CCATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCAT
CCAGGGCGGGCCTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCAC
TGACAAGCCTCAAGGTTACAAATTGGGGACTGTTTGTTTGAAAAATGAGC
AGCGGAAAGTATAAATCAGTCATCCGGGAAGAAATATAGACTGCCGTAGG
AAATAAAACATAAATGAAAGACACGCATTGAGTCCCCGCTCTTGAATTTT
CCTGATTTATTAAAATAGCAATATTTCCCCGGCAAATAGAATTGGAAATA
CATCGAGTGTGCCGATTTTTGTAGTCCCCTAGCACCTGAAATATATCCGG
CATGTGCCGGCAAGGACCTGGTTACGCGTGTTGTAGGAGGTTTTGGTGGC
GATCCCCCTACCCAAATCATCTTGACACAGTCTCCCCCACCTGACTCGCA
AATGGTTATCGATTACCCGTTTAGATGTTTCGATGATTTTAGAGGCTTAA
CCATTGTCAATATCGAACTCACAAAAGAACCAATCCATAATCAATCAATC
TATCAATT
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protein sequence of jgi.p|Nanoce1779_2|590766

>mRNA_5899-protein ID=mRNA_5899-protein|Name=jgi.p|Nanoce1779_2|590766|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MTGAEEGVRSHALFGGAITFTLPASFANVSEIRQVPDNQEVFVDQSSDAS
LILELLELERGKEGLEAAKYFFCDLAEHNEAQAANIQFQADMSKTGVVPH
LDAYPTYCLIGTQSISKFHTPSAAHQSVRIYLVNVRLQQTGTDLVLTLNL
PPSAQAPAAAEFSQTLFIQGGPCPDPAVAALQEALTSLKVTNWGLFV*
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mRNA from alignment at scaffold_11:892782..894301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5899 ID=mRNA_5899|Name=jgi.p|Nanoce1779_2|590766|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at scaffold_11:892782..894301- (Nannochloropsis oceanica)
CAGGCACGAATCCCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATG
ACCGGGGCAGAGGAAGGTACGTGCAAATGCGGATTATGCCGCTCGTATCA
ACTCCTCTCCAAGAACCTCCCCACCATCCCCACAGGAGTCCGATCCCACG
CCCTATTCGGCGGTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAAAC
GTCAGGTAAGTAAATTTTACCTGTTAGTTGTGGTCTTCGCACTTCGTGCT
CTCTTCCTGGTACAATCTAAGGGCTAGGGTGACAGACTCGTAGGCCCCTC
CCTGACAGTCACACATAATATATACCATCCCTTTTGCAGCGAGATTCGCC
AGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCA
CTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGT
ATGTGTCTGTAAGGTACCGAACAGGGAGGGAGTGTAGTGGCGTATGCGTG
ATTTCACTGCCTGTGAGTCCTCCACCTCGAGCCTCTACACAATTAATCCT
TATCCATTAAATAGGCCGCAAAATACTTTTTCTGTGACCTTGCCGAGCAC
AACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGACATGAGCAAAAC
CGGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTGTCTTATCGGCA
CACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCACATCAATCTGTG
CGTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGCACGGACCTCGT
TCTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGCCGCCGCCGAAT
TTAGCCAGACCTTGTTCATCCAGGTAGGTAAGTCTCTTGAGAGATGAAGG
AATCGGGAGCGACATATCTGGTGGGCATATGTCAATCTTTACATACTTAT
ATGGTACAGAAGCACAATTCAAAACCACAGGCTAAGTTTTATTTACATTC
CCCACAAAATATTTAGGGCGGGCCTTGCCCAGACCCGGCTGTGGCAGCAT
TACAGGAAGCACTGACAAGCCTCAAGGTTACAAATTGGGGACTGTTTGTT
TGAAAAATGAGCAGCGGAAAGTATAAATCAGTCATCCGGGAAGAAATATA
GACTGCCGTAGGAAATAAAACATAAATGAAAGACACGCATTGAGTCCCCG
CTCTTGAATTTTCCTGATTTATTAAAATAGCAATATTTCCCCGGCAAATA
GAATTGGAAATACATCGAGTGTGCCGATTTTTGTAGTCCCCTAGCACCTG
AAATATATCCGGCATGTGCCGGCAAGGACCTGGTTACGCGTGTTGTAGGA
GGTTTTGGTGGCGATCCCCCTACCCAAATCATCTTGACACAGTCTCCCCC
ACCTGACTCGCAAATGGTTATCGATTACCCGTTTAGATGTTTCGATGATT
TTAGAGGCTTAACCATTGTCAATATCGAACTCACAAAAGAACCAATCCAT
AATCAATCAATCTATCAATT
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Coding sequence (CDS) from alignment at scaffold_11:892782..894301-

>mRNA_5899 ID=mRNA_5899|Name=jgi.p|Nanoce1779_2|590766|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_11:892782..894301- (Nannochloropsis oceanica)
GGCGGGCCTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCACTGAC
AAGCCTCAAGGTTACAAATTGGGGACTGTTTGTTTGAGCCGCAAAATACT
TTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGAACATTCAG
TTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTAGATGCCTA
CCCAACCTACTGTCTTATCGGCACACAAAGTATCTCCAAGTTCCACACGC
CCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGTCAATGTGCGCTTG
CAACAGACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCCCCATCGGC
ACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCATCCAGCGAG
ATTCGCCAGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGA
CGCGTCACTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCC
TTGAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCATCACATTCACCC
TGCCCGCCTCGTTTGCAAACGTCAGATGACCGGGGCAGAGGAAGGGCGGG
CCTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCACTGACAAGCCT
CAAGGTTACAAATTGGGGACTGTTTGTTTGAGCCGCAAAATACTTTTTCT
GTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGAACATTCAGTTTCAA
GCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTAGATGCCTACCCAAC
CTACTGTCTTATCGGCACACAAAGTATCTCCAAGTTCCACACGCCCAGTG
CGGCACATCAATCTGTGCGTATCTATCTTGTCAATGTGCGCTTGCAACAG
ACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCCCCATCGGCACAAGC
ACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCATCCAGCGAGATTCGC
CAGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTC
ACTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGG
AGTCCGATCCCACGCCCTATTCGGCGGTGCCATCACATTCACCCTGCCCG
CCTCGTTTGCAAACGTCAGATGACCGGGGCAGAGGAAGGGCGGGCCTTGC
CCAGACCCGGCTGTGGCAGCATTACAGGAAGCACTGACAAGCCTCAAGGT
TACAAATTGGGGACTGTTTGTTTGAGCCGCAAAATACTTTTTCTGTGACC
TTGCCGAGCACAACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGAC
ATGAGCAAAACCGGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTG
TCTTATCGGCACACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCAC
ATCAATCTGTGCGTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGC
ACGGACCTCGTTCTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGC
CGCCGCCGAATTTAGCCAGACCTTGTTCATCCAGCGAGATTCGCCAGGTA
CCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTAT
CCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGAGTCCG
ATCCCACGCCCTATTCGGCGGTGCCATCACATTCACCCTGCCCGCCTCGT
TTGCAAACGTCAGATGACCGGGGCAGAGGAAGGGCGGGCCTTGCCCAGAC
CCGGCTGTGGCAGCATTACAGGAAGCACTGACAAGCCTCAAGGTTACAAA
TTGGGGACTGTTTGTTTGAGCCGCAAAATACTTTTTCTGTGACCTTGCCG
AGCACAACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGACATGAGC
AAAACCGGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTGTCTTAT
CGGCACACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCACATCAAT
CTGTGCGTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGCACGGAC
CTCGTTCTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGCCGCCGC
CGAATTTAGCCAGACCTTGTTCATCCAGCGAGATTCGCCAGGTACCAGAC
AATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTATCCTAGA
ATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGAGTCCGATCCCA
CGCCCTATTCGGCGGTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAA
ACGTCAGATGACCGGGGCAGAGGAAGGGCGGGCCTTGCCCAGACCCGGCT
GTGGCAGCATTACAGGAAGCACTGACAAGCCTCAAGGTTACAAATTGGGG
ACTGTTTGTTTGAGCCGCAAAATACTTTTTCTGTGACCTTGCCGAGCACA
ACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGACATGAGCAAAACC
GGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTGTCTTATCGGCAC
ACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCACATCAATCTGTGC
GTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGCACGGACCTCGTT
CTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGCCGCCGCCGAATT
TAGCCAGACCTTGTTCATCCAGCGAGATTCGCCAGGTACCAGACAATCAA
GAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTATCCTAGAATTGCT
GGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGAGTCCGATCCCACGCCCT
ATTCGGCGGTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAAACGTCA
GATGACCGGGGCAGAGGAAG
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Synonyms
Publications