jgi.p|Nanoce1779_2|590756, mRNA_5898 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590756
Unique NamemRNA_5898
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1138
Alignment locationscaffold_11:891228..892493 -

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Properties
Property NameValue
TranscriptId590842
TrackFilteredModels2
ProteinId590756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:891228..892493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590756gene_5898Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590756mRNA_5898-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5898CDS_5898Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5898 ID=mRNA_5898|Name=jgi.p|Nanoce1779_2|590756|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp
ATGGATCGCAGGACAGCCGAGCACCTGATTGGCCAAGGCTGCGTGATGGG
CATCGTCCATGTATTGTCCGGCCCCGACCACCTTTCTGCCTTGGCAGCAC
TCACGGCCACAGTCCCTCCTTACAAAGCTTTCTTTGCCGGCGTCCAGTGG
GGCATGGGACATAGCACGGGCCTGATCCTCATGACAGCCGTTTTTGTGAG
TGTCGAGCACGAGATTATGGACCGGGTGGCGAGTTATTGTGAGTGGCTTG
TGGGCTTTTTGATGATTGGCTTGGGGGCATGGACGATGTGGCGGGCTTTT
CACGGAAGGCCTTTCCAGCACTCACCATTGACACCGAGGGAAAGAAAGAG
TTTTTCGACGGCGCCAGCGGTGGCACCGGGGTTGTTGGTGAGAGAGGATG
GTGAGAAGGGGAGCAGAAGCGGAGGAGAAGACGAAGAGGAAAGGTACGAG
GGGAGGAGTGGAAGCAAGGAGCTGGAGGTCGTACCAGTGGCGAATCCGGA
GTGGGGGAAAGAAGTGGTGGCTGTGTGTTCTCCCGGGTCGTTGGGGAATG
AATGTGAGGGAAGAGGAGGAGAAAAGAAAGGATTGGACGGAGAAAAAGAA
GCAGAGGATGGCAGCGCGGTCGTCGTGAAGATGGATGAGAACTCTACCGT
CATTCCCACCTCCGCCTCCCGTGACGATGTGTCCCTCCCACTCAGCCACA
AGGAGAGGACGGAGGAAGCGAAGGAGGGCGCGCCGTCAAGGAGTGGCTGG
TGCCGTCGCCCAAAGCAGTTGAAGGAGAAATTGTTGTCGTTTGTGGTGGG
GGTAGTACACGGCGTGGCGGGACCCGGAGGGATTTTGGGCGTGCTGCCGG
CGGTGCAGCTGCGTGATTGGGGCAAGTCCTCGCTGTATTTGGGGACGTTT
TGTGTGATGTCTTCGTTGACGATGGGTGCCTTTGCCGCTGTGTACGGAGG
CGTGACGTATGGATTGGGGAAGAAGGTGAGCGAGAGGGATGGAGGAGAGA
AGGGTAAGAAGAGGGCCGAGAGGCTTGATTTCAGCTTGAAGATTTTCAGC
GCCATGTTGTCGGTGGTGGTGGGGGTGCTGTGGCTAGCGTTGACGGCGAC
GGGGAAGATGGCGGAGGTGTTTGGGGAGTAGAGCGAGG
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protein sequence of jgi.p|Nanoce1779_2|590756

>mRNA_5898-protein ID=mRNA_5898-protein|Name=jgi.p|Nanoce1779_2|590756|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MDRRTAEHLIGQGCVMGIVHVLSGPDHLSALAALTATVPPYKAFFAGVQW
GMGHSTGLILMTAVFVSVEHEIMDRVASYCEWLVGFLMIGLGAWTMWRAF
HGRPFQHSPLTPRERKSFSTAPAVAPGLLVREDGEKGSRSGGEDEEERYE
GRSGSKELEVVPVANPEWGKEVVAVCSPGSLGNECEGRGGEKKGLDGEKE
AEDGSAVVVKMDENSTVIPTSASRDDVSLPLSHKERTEEAKEGAPSRSGW
CRRPKQLKEKLLSFVVGVVHGVAGPGGILGVLPAVQLRDWGKSSLYLGTF
CVMSSLTMGAFAAVYGGVTYGLGKKVSERDGGEKGKKRAERLDFSLKIFS
AMLSVVVGVLWLALTATGKMAEVFGE*
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mRNA from alignment at scaffold_11:891228..892493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5898 ID=mRNA_5898|Name=jgi.p|Nanoce1779_2|590756|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp|location=Sequence derived from alignment at scaffold_11:891228..892493- (Nannochloropsis oceanica)
ATGGATCGCAGGACAGCCGAGCACCTGATTGGCCAAGGCTGCGTGATGGG
CATCGTCCATGTATTGTCCGGTAGGTTTAAAGCGGAGTGCCCAGGACGGG
TGGGTGAGTGGGCATGGCCATCCCGTCGCTCTTGTCGTCTCACGCGTCAA
ACCTGCCGTAAATCGTCCCCCACTCCCTCTCTCACATCCTATTCGCAGGC
CCCGACCACCTTTCTGCCTTGGCAGCACTCACGGCCACAGTCCCTCCTTA
CAAAGCTTTCTTTGCCGGCGTCCAGTGGGGCATGGGACATAGCACGGGCC
TGATCCTCATGACAGCCGTTTTTGTGAGTGTCGAGCACGAGATTATGGAC
CGGGTGGCGAGTTATTGTGAGTGGCTTGTGGGCTTTTTGATGATTGGCTT
GGGGGCATGGACGATGTGGCGGGCTTTTCACGGAAGGCCTTTCCAGCACT
CACCATTGACACCGAGGGAAAGAAAGAGTTTTTCGACGGCGCCAGCGGTG
GCACCGGGGTTGTTGGTGAGAGAGGATGGTGAGAAGGGGAGCAGAAGCGG
AGGAGAAGACGAAGAGGAAAGGTACGAGGGGAGGAGTGGAAGCAAGGAGC
TGGAGGTCGTACCAGTGGCGAATCCGGAGTGGGGGAAAGAAGTGGTGGCT
GTGTGTTCTCCCGGGTCGTTGGGGAATGAATGTGAGGGAAGAGGAGGAGA
AAAGAAAGGATTGGACGGAGAAAAAGAAGCAGAGGATGGCAGCGCGGTCG
TCGTGAAGATGGATGAGAACTCTACCGTCATTCCCACCTCCGCCTCCCGT
GACGATGTGTCCCTCCCACTCAGCCACAAGGAGAGGACGGAGGAAGCGAA
GGAGGGCGCGCCGTCAAGGAGTGGCTGGTGCCGTCGCCCAAAGCAGTTGA
AGGAGAAATTGTTGTCGTTTGTGGTGGGGGTAGTACACGGCGTGGCGGGA
CCCGGAGGGATTTTGGGCGTGCTGCCGGCGGTGCAGCTGCGTGATTGGGG
CAAGTCCTCGCTGTATTTGGGGACGTTTTGTGTGATGTCTTCGTTGACGA
TGGGTGCCTTTGCCGCTGTGTACGGAGGCGTGACGTATGGATTGGGGAAG
AAGGTGAGCGAGAGGGATGGAGGAGAGAAGGGTAAGAAGAGGGCCGAGAG
GCTTGATTTCAGCTTGAAGATTTTCAGCGCCATGTTGTCGGTGGTGGTGG
GGGTGCTGTGGCTAGCGTTGACGGCGACGGGGAAGATGGCGGAGGTGTTT
GGGGAGTAGAGCGAGG
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Coding sequence (CDS) from alignment at scaffold_11:891228..892493-

>mRNA_5898 ID=mRNA_5898|Name=jgi.p|Nanoce1779_2|590756|organism=Nannochloropsis oceanica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_11:891228..892493- (Nannochloropsis oceanica)
GCCCCGACCACCTTTCTGCCTTGGCAGCACTCACGGCCACAGTCCCTCCT
TACAAAGCTTTCTTTGCCGGCGTCCAGTGGGGCATGGGACATAGCACGGG
CCTGATCCTCATGACAGCCGTTTTTGTGAGTGTCGAGCACGAGATTATGG
ACCGGGTGGCGAGTTATTGTGAGTGGCTTGTGGGCTTTTTGATGATTGGC
TTGGGGGCATGGACGATGTGGCGGGCTTTTCACGGAAGGCCTTTCCAGCA
CTCACCATTGACACCGAGGGAAAGAAAGAGTTTTTCGACGGCGCCAGCGG
TGGCACCGGGGTTGTTGGTGAGAGAGGATGGTGAGAAGGGGAGCAGAAGC
GGAGGAGAAGACGAAGAGGAAAGGTACGAGGGGAGGAGTGGAAGCAAGGA
GCTGGAGGTCGTACCAGTGGCGAATCCGGAGTGGGGGAAAGAAGTGGTGG
CTGTGTGTTCTCCCGGGTCGTTGGGGAATGAATGTGAGGGAAGAGGAGGA
GAAAAGAAAGGATTGGACGGAGAAAAAGAAGCAGAGGATGGCAGCGCGGT
CGTCGTGAAGATGGATGAGAACTCTACCGTCATTCCCACCTCCGCCTCCC
GTGACGATGTGTCCCTCCCACTCAGCCACAAGGAGAGGACGGAGGAAGCG
AAGGAGGGCGCGCCGTCAAGGAGTGGCTGGTGCCGTCGCCCAAAGCAGTT
GAAGGAGAAATTGTTGTCGTTTGTGGTGGGGGTAGTACACGGCGTGGCGG
GACCCGGAGGGATTTTGGGCGTGCTGCCGGCGGTGCAGCTGCGTGATTGG
GGCAAGTCCTCGCTGTATTTGGGGACGTTTTGTGTGATGTCTTCGTTGAC
GATGGGTGCCTTTGCCGCTGTGTACGGAGGCGTGACGTATGGATTGGGGA
AGAAGGTGAGCGAGAGGGATGGAGGAGAGAAGGGTAAGAAGAGGGCCGAG
AGGCTTGATTTCAGCTTGAAGATTTTCAGCGCCATGTTGTCGGTGGTGGT
GGGGGTGCTGTGGCTAGCGTTGACGGCGACGGGGAAGATGGCGGAGGTGT
TTGGGGAGTAGATGGATCGCAGGACAGCCGAGCACCTGATTGGCCAAGGC
TGCGTGATGGGCATCGTCCATGTATTGTCCGGCCCCGACCACCTTTCTGC
CTTGGCAGCACTCACGGCCACAGTCCCTCCTTACAAAGCTTTCTTTGCCG
GCGTCCAGTGGGGCATGGGACATAGCACGGGCCTGATCCTCATGACAGCC
GTTTTTGTGAGTGTCGAGCACGAGATTATGGACCGGGTGGCGAGTTATTG
TGAGTGGCTTGTGGGCTTTTTGATGATTGGCTTGGGGGCATGGACGATGT
GGCGGGCTTTTCACGGAAGGCCTTTCCAGCACTCACCATTGACACCGAGG
GAAAGAAAGAGTTTTTCGACGGCGCCAGCGGTGGCACCGGGGTTGTTGGT
GAGAGAGGATGGTGAGAAGGGGAGCAGAAGCGGAGGAGAAGACGAAGAGG
AAAGGTACGAGGGGAGGAGTGGAAGCAAGGAGCTGGAGGTCGTACCAGTG
GCGAATCCGGAGTGGGGGAAAGAAGTGGTGGCTGTGTGTTCTCCCGGGTC
GTTGGGGAATGAATGTGAGGGAAGAGGAGGAGAAAAGAAAGGATTGGACG
GAGAAAAAGAAGCAGAGGATGGCAGCGCGGTCGTCGTGAAGATGGATGAG
AACTCTACCGTCATTCCCACCTCCGCCTCCCGTGACGATGTGTCCCTCCC
ACTCAGCCACAAGGAGAGGACGGAGGAAGCGAAGGAGGGCGCGCCGTCAA
GGAGTGGCTGGTGCCGTCGCCCAAAGCAGTTGAAGGAGAAATTGTTGTCG
TTTGTGGTGGGGGTAGTACACGGCGTGGCGGGACCCGGAGGGATTTTGGG
CGTGCTGCCGGCGGTGCAGCTGCGTGATTGGGGCAAGTCCTCGCTGTATT
TGGGGACGTTTTGTGTGATGTCTTCGTTGACGATGGGTGCCTTTGCCGCT
GTGTACGGAGGCGTGACGTATGGATTGGGGAAGAAGGTGAGCGAGAGGGA
TGGAGGAGAGAAGGGTAAGAAGAGGGCCGAGAGGCTTGATTTCAGCTTGA
AGATTTTCAGCGCCATGTTGTCGGTGGTGGTGGGGGTGCTGTGGCTAGCG
TTGACGGCGACGGGGAAGATGGCGGAGGTGTTTGGGGAGTAGATGGATCG
CAGGACAGCCGAGCACCTGATTGGCCAAGGCTGCGTGATGGGCATCGTCC
ATGTATTGTCCG
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Synonyms
Publications