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Properties
| Property Name | Value |
|---|
| TranscriptId | 590817 |
| Track | FilteredModels2 |
| ProteinId | 590731 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:867046..869073 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5891 ID=mRNA_5891|Name=jgi.p|Nanoce1779_2|590731|organism=Nannochloropsis oceanica|type=mRNA|length=830bp
AGGCTACATATCTATCAACCACCCATGGCCGCTGGACGAAGGACTGTGGT
GGCGGGTGGCAGGAGCAGCGGCATCAATGAGGAAGGTGGCGCCGGTGAAG
TGAAAAAAAGGGGAAACGGAGGAGGAGCGGCTGCAATGCCGATGCCTTGC
ACGCCCGAGAAACCCAGGGCACCGAAGGCGCCTGCTGCGCCCATCAAGCG
CGGCGGTGTGAGTCACGCGGTGGCTGCTGTGTCAGAGGGAAGCAAGCCCG
CGCCTACCCCTTGCTCCACCTCTGCCTCATCCTCGTCCTCGTGCTTCCCC
TCCTTATTCACCCTCCTGTTCCTGGTTGTAGCCGCCGTCGTATTGTCCCT
GTCCTTTCCCGCCATTTATGAATTGAAGCAGATCGTGCAAATGCAAGGAC
TCAGCGAGAGGGAAGTCCGCAAGATCGTGGTGGAGACGATGGAGAGCCAG
ACCCAAGGGCATGGCCGAGGGCGCAGGCAAGGGCCATCACCCAAGATTAA
TAAGGAAGACGTTCGCCAGGTCTTCAGGGACCTGATGAAAGAGGAGGGGG
CTGCTCTTCTTGGTCCTGTCCTTCAACCTCTTACTGCTGCTGCTGCTGCT
CCTCCTCCTCCTCCTCCTGCCATCGATGATAACAAGCTCCAAAAATGTGT
TTCCACAGAGGTGGCACGTCAGCTGCGAGCATATGGGCCACAGGGGCAAC
CCGCTACAGAGGAAGAGAGGACAGCAGCTGCTGCCCGAGGGGCGGTTCCT
TGAGGGAGAGCGGGAAGGAGGGAGGGAGGGAGCCGACATTTGAGGAAAAG
TAGAGGGAGTGACACGACACACAACACACG back to topprotein sequence of jgi.p|Nanoce1779_2|590731 >mRNA_5891-protein ID=mRNA_5891-protein|Name=jgi.p|Nanoce1779_2|590731|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MAAGRRTVVAGGRSSGINEEGGAGEVKKRGNGGGAAAMPMPCTPEKPRAP
KAPAAPIKRGGVSHAVAAVSEGSKPAPTPCSTSASSSSSCFPSLFTLLFL
VVAAVVLSLSFPAIYELKQIVQMQGLSEREVRKIVVETMESQTQGHGRGR
RQGPSPKINKEDVRQVFRDLMKEEGAALLGPVLQPLTAAAAAPPPPPPAI
DDNKLQKCVSTEVARQLRAYGPQGQPATEEERTAAAARGAVP* back to topmRNA from alignment at scaffold_11:867046..869073- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5891 ID=mRNA_5891|Name=jgi.p|Nanoce1779_2|590731|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at scaffold_11:867046..869073- (Nannochloropsis oceanica)
AGGCTACATATCTATCAACCACCCATGGCCGCTGGACGAAGGACTGTGGT
GGCGGGTGGCAGGAGCAGCGGCATCAATGAGGAAGGTGGCGCCGGTGAAG
TGAAAAAAAGGGGAAACGGAGGAGGAGCGGCTGCAATGCCGATGCCTTGC
ACGCCCGAGAAACCCAGGGTAAGAAAAGAAAAAGGAAGGAGAATAGCTAA
TGAGATGACGGGGCTTGGGAATAGAGGGCCGGCTCCTTTTCCCCCACGGC
CGGTCACCTCCCACCAAAATCATGCCGATGTGCCAGCCTGGACTGGCGTA
TGAAAGCCCGATAGATATGGTGAACATTAAAATCCAGACGCATGCATATC
GAGGAAGAAGCGAAAATTTCTCTCTTGCCTGACCAGTTGCTCAGACAAGG
CGATGCCAATCTCAGGGAATCATCTCATCCCTCCCTCTGTCCGCCCATCC
CTTCCTGCGTCCCTCCCTTCCTCCACATAGGCACCGAAGGCGCCTGCTGC
GCCCATCAAGCGCGGCGGTGTGAGTCACGCGGTGGCTGCTGTGTCAGAGG
GAAGCAAGCCCGCGCCTACCCCTTGCTCCACCTCTGCCTCATCCTCGTCC
TCGTGCTTCCCCTCCTTATTCACCCTCCTGTTCCTGGTTGTAGCCGCCGT
CGTATTGTCCCTGTCCTTTCCCGCCATTTATGAATTGAAGCAGATCGTGC
AAATGCAAGGGTGAGTCGATCGCGAGAGGGGAAGGGGGAGAGGGAAGGGA
AGGAAGGAAGGGAAGAGGAGGGAGATGTCTTGTTGTGGTGGCATTATAAC
AATCCTTATCCCTCTTCCGCTACCTCCCCTCCGTCCCTGGACTCTTCTTT
CGCTCCCCTTAAAGACTCAGCGAGAGGGAAGTCCGCAAGATCGTGGTGGA
GACGATGGAGAGCCAGACCCAAGGGCATGGCCGAGGGCGCAGGCAAGGGC
CATCACCCAAGGTACGCCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTC
CCTGCATCCTCTCTCTGTCCCCCTTCTCCCGTCATCTTTGATACATCCCG
GCTTTCCTCCTTTCGTCCATCACTCTCCCTCTGTGCCGGCGTTTCTCGCT
CCTTCACACTCCCCTCCCTCCCCTTCGTCCTCCTTGCACGTAGATTAATA
AGGAAGACGTTCGCCAGGTCTTCAGGGACCTGATGAAAGAGGAGGGGGCT
GGTGAGTGAAGGGATCGGATCAGGGAGAGTGAGAAGAAGGGATGAAGGGG
AGAAAAGAAGGAGGGCGGGATGGTCTGGGCTGTTTATTTTGGCCTCACAT
TCTCTCCTCTCCCCTCCCTCCCTCCCTCCCTCCTTGTCCCCCTCCCTTCC
TCCCTCCCCTCTTCCCTCTCTTCCTAGCTCTTCTTGGTCCTGTCCTTCAA
CCTCTTACTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCTGCCATCGA
TGATAACAAGCTCCAAAAATGTGTTTCCACAGAGGTACATTATTGCTTGT
CCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCATTTCACCGCCCTGTCC
GTATCCTCTCTTCGTTACCACCACCTTCCCTCCATCCCTCCCTCCGACCC
TCCCTCCCTTCTTCTTCCATTCTCCAAGGGCGCTCGTCAGCCTTTACAGG
CCGACCAGACAACTTCTCCCCCCTCCCTCCCTCCTTTCCTCCCTCCCTCC
CCCCCTCCCTCCCTCCTTTCCTCCCTTCCTCCTTTCTTCCCCTTTTCCTT
CCTCCCTTTCTCCCTTCCTCCCTTCCTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTACCTACCTACCTCCCTACCGTTCGTTTTCC
CTCCTTAGGTGGCACGTCAGCTGCGAGCATATGGGCCACAGGGGCAACCC
GCTACAGAGGAAGAGAGGACAGCAGCTGCTGCCCGAGGGGCGGTTCCTTG
AGGGAGAGCGGGAAGGAGGGAGGGAGGGAGCCGACATTTGAGGAAAAGTA
GAGGGAGTGACACGACACACAACACACG back to topCoding sequence (CDS) from alignment at scaffold_11:867046..869073- >mRNA_5891 ID=mRNA_5891|Name=jgi.p|Nanoce1779_2|590731|organism=Nannochloropsis oceanica|type=CDS|length=4374bp|location=Sequence derived from alignment at scaffold_11:867046..869073- (Nannochloropsis oceanica)
GTGGCACGTCAGCTGCGAGCATATGGGCCACAGGGGCAACCCGCTACAGA
GGAAGAGAGGACAGCAGCTGCTGCCCGAGGGGCGGTTCCTTGACTCTTCT
TGGTCCTGTCCTTCAACCTCTTACTGCTGCTGCTGCTGCTCCTCCTCCTC
CTCCTCCTGCCATCGATGATAACAAGCTCCAAAAATGTGTTTCCACAGAG
ATTAATAAGGAAGACGTTCGCCAGGTCTTCAGGGACCTGATGAAAGAGGA
GGGGGCTGACTCAGCGAGAGGGAAGTCCGCAAGATCGTGGTGGAGACGAT
GGAGAGCCAGACCCAAGGGCATGGCCGAGGGCGCAGGCAAGGGCCATCAC
CCAAGGCACCGAAGGCGCCTGCTGCGCCCATCAAGCGCGGCGGTGTGAGT
CACGCGGTGGCTGCTGTGTCAGAGGGAAGCAAGCCCGCGCCTACCCCTTG
CTCCACCTCTGCCTCATCCTCGTCCTCGTGCTTCCCCTCCTTATTCACCC
TCCTGTTCCTGGTTGTAGCCGCCGTCGTATTGTCCCTGTCCTTTCCCGCC
ATTTATGAATTGAAGCAGATCGTGCAAATGCAAGGATGGCCGCTGGACGA
AGGACTGTGGTGGCGGGTGGCAGGAGCAGCGGCATCAATGAGGAAGGTGG
CGCCGGTGAAGTGAAAAAAAGGGGAAACGGAGGAGGAGCGGCTGCAATGC
CGATGCCTTGCACGCCCGAGAAACCCAGGGTGGCACGTCAGCTGCGAGCA
TATGGGCCACAGGGGCAACCCGCTACAGAGGAAGAGAGGACAGCAGCTGC
TGCCCGAGGGGCGGTTCCTTGACTCTTCTTGGTCCTGTCCTTCAACCTCT
TACTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCTGCCATCGATGATA
ACAAGCTCCAAAAATGTGTTTCCACAGAGATTAATAAGGAAGACGTTCGC
CAGGTCTTCAGGGACCTGATGAAAGAGGAGGGGGCTGACTCAGCGAGAGG
GAAGTCCGCAAGATCGTGGTGGAGACGATGGAGAGCCAGACCCAAGGGCA
TGGCCGAGGGCGCAGGCAAGGGCCATCACCCAAGGCACCGAAGGCGCCTG
CTGCGCCCATCAAGCGCGGCGGTGTGAGTCACGCGGTGGCTGCTGTGTCA
GAGGGAAGCAAGCCCGCGCCTACCCCTTGCTCCACCTCTGCCTCATCCTC
GTCCTCGTGCTTCCCCTCCTTATTCACCCTCCTGTTCCTGGTTGTAGCCG
CCGTCGTATTGTCCCTGTCCTTTCCCGCCATTTATGAATTGAAGCAGATC
GTGCAAATGCAAGGATGGCCGCTGGACGAAGGACTGTGGTGGCGGGTGGC
AGGAGCAGCGGCATCAATGAGGAAGGTGGCGCCGGTGAAGTGAAAAAAAG
GGGAAACGGAGGAGGAGCGGCTGCAATGCCGATGCCTTGCACGCCCGAGA
AACCCAGGGTGGCACGTCAGCTGCGAGCATATGGGCCACAGGGGCAACCC
GCTACAGAGGAAGAGAGGACAGCAGCTGCTGCCCGAGGGGCGGTTCCTTG
ACTCTTCTTGGTCCTGTCCTTCAACCTCTTACTGCTGCTGCTGCTGCTCC
TCCTCCTCCTCCTCCTGCCATCGATGATAACAAGCTCCAAAAATGTGTTT
CCACAGAGATTAATAAGGAAGACGTTCGCCAGGTCTTCAGGGACCTGATG
AAAGAGGAGGGGGCTGACTCAGCGAGAGGGAAGTCCGCAAGATCGTGGTG
GAGACGATGGAGAGCCAGACCCAAGGGCATGGCCGAGGGCGCAGGCAAGG
GCCATCACCCAAGGCACCGAAGGCGCCTGCTGCGCCCATCAAGCGCGGCG
GTGTGAGTCACGCGGTGGCTGCTGTGTCAGAGGGAAGCAAGCCCGCGCCT
ACCCCTTGCTCCACCTCTGCCTCATCCTCGTCCTCGTGCTTCCCCTCCTT
ATTCACCCTCCTGTTCCTGGTTGTAGCCGCCGTCGTATTGTCCCTGTCCT
TTCCCGCCATTTATGAATTGAAGCAGATCGTGCAAATGCAAGGATGGCCG
CTGGACGAAGGACTGTGGTGGCGGGTGGCAGGAGCAGCGGCATCAATGAG
GAAGGTGGCGCCGGTGAAGTGAAAAAAAGGGGAAACGGAGGAGGAGCGGC
TGCAATGCCGATGCCTTGCACGCCCGAGAAACCCAGGGTGGCACGTCAGC
TGCGAGCATATGGGCCACAGGGGCAACCCGCTACAGAGGAAGAGAGGACA
GCAGCTGCTGCCCGAGGGGCGGTTCCTTGACTCTTCTTGGTCCTGTCCTT
CAACCTCTTACTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCTGCCAT
CGATGATAACAAGCTCCAAAAATGTGTTTCCACAGAGATTAATAAGGAAG
ACGTTCGCCAGGTCTTCAGGGACCTGATGAAAGAGGAGGGGGCTGACTCA
GCGAGAGGGAAGTCCGCAAGATCGTGGTGGAGACGATGGAGAGCCAGACC
CAAGGGCATGGCCGAGGGCGCAGGCAAGGGCCATCACCCAAGGCACCGAA
GGCGCCTGCTGCGCCCATCAAGCGCGGCGGTGTGAGTCACGCGGTGGCTG
CTGTGTCAGAGGGAAGCAAGCCCGCGCCTACCCCTTGCTCCACCTCTGCC
TCATCCTCGTCCTCGTGCTTCCCCTCCTTATTCACCCTCCTGTTCCTGGT
TGTAGCCGCCGTCGTATTGTCCCTGTCCTTTCCCGCCATTTATGAATTGA
AGCAGATCGTGCAAATGCAAGGATGGCCGCTGGACGAAGGACTGTGGTGG
CGGGTGGCAGGAGCAGCGGCATCAATGAGGAAGGTGGCGCCGGTGAAGTG
AAAAAAAGGGGAAACGGAGGAGGAGCGGCTGCAATGCCGATGCCTTGCAC
GCCCGAGAAACCCAGGGTGGCACGTCAGCTGCGAGCATATGGGCCACAGG
GGCAACCCGCTACAGAGGAAGAGAGGACAGCAGCTGCTGCCCGAGGGGCG
GTTCCTTGACTCTTCTTGGTCCTGTCCTTCAACCTCTTACTGCTGCTGCT
GCTGCTCCTCCTCCTCCTCCTCCTGCCATCGATGATAACAAGCTCCAAAA
ATGTGTTTCCACAGAGATTAATAAGGAAGACGTTCGCCAGGTCTTCAGGG
ACCTGATGAAAGAGGAGGGGGCTGACTCAGCGAGAGGGAAGTCCGCAAGA
TCGTGGTGGAGACGATGGAGAGCCAGACCCAAGGGCATGGCCGAGGGCGC
AGGCAAGGGCCATCACCCAAGGCACCGAAGGCGCCTGCTGCGCCCATCAA
GCGCGGCGGTGTGAGTCACGCGGTGGCTGCTGTGTCAGAGGGAAGCAAGC
CCGCGCCTACCCCTTGCTCCACCTCTGCCTCATCCTCGTCCTCGTGCTTC
CCCTCCTTATTCACCCTCCTGTTCCTGGTTGTAGCCGCCGTCGTATTGTC
CCTGTCCTTTCCCGCCATTTATGAATTGAAGCAGATCGTGCAAATGCAAG
GATGGCCGCTGGACGAAGGACTGTGGTGGCGGGTGGCAGGAGCAGCGGCA
TCAATGAGGAAGGTGGCGCCGGTGAAGTGAAAAAAAGGGGAAACGGAGGA
GGAGCGGCTGCAATGCCGATGCCTTGCACGCCCGAGAAACCCAGGGTGGC
ACGTCAGCTGCGAGCATATGGGCCACAGGGGCAACCCGCTACAGAGGAAG
AGAGGACAGCAGCTGCTGCCCGAGGGGCGGTTCCTTGACTCTTCTTGGTC
CTGTCCTTCAACCTCTTACTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCT
CCTGCCATCGATGATAACAAGCTCCAAAAATGTGTTTCCACAGAGATTAA
TAAGGAAGACGTTCGCCAGGTCTTCAGGGACCTGATGAAAGAGGAGGGGG
CTGACTCAGCGAGAGGGAAGTCCGCAAGATCGTGGTGGAGACGATGGAGA
GCCAGACCCAAGGGCATGGCCGAGGGCGCAGGCAAGGGCCATCACCCAAG
GCACCGAAGGCGCCTGCTGCGCCCATCAAGCGCGGCGGTGTGAGTCACGC
GGTGGCTGCTGTGTCAGAGGGAAGCAAGCCCGCGCCTACCCCTTGCTCCA
CCTCTGCCTCATCCTCGTCCTCGTGCTTCCCCTCCTTATTCACCCTCCTG
TTCCTGGTTGTAGCCGCCGTCGTATTGTCCCTGTCCTTTCCCGCCATTTA
TGAATTGAAGCAGATCGTGCAAATGCAAGGATGGCCGCTGGACGAAGGAC
TGTGGTGGCGGGTGGCAGGAGCAGCGGCATCAATGAGGAAGGTGGCGCCG
GTGAAGTGAAAAAAAGGGGAAACGGAGGAGGAGCGGCTGCAATGCCGATG
CCTTGCACGCCCGAGAAACCCAGG back to top
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