jgi.p|Nanoce1779_2|40652, mRNA_5889 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|40652
Unique NamemRNA_5889
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length880
Alignment locationscaffold_11:853690..854593 +

Link to JBrowse

Properties
Property NameValue
TranscriptId40738
TrackFilteredModels2
ProteinId40652
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:853690..854593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|40652gene_5889Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|40652mRNA_5889-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5889CDS_5889Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5889 ID=mRNA_5889|Name=jgi.p|Nanoce1779_2|40652|organism=Nannochloropsis oceanica|type=mRNA|length=880bp
GATGTCGCGAGAGGCGCATTTCCCTCTTTGAGTTAGACCATCTCATGGAG
GGAGGGAAGGAGGGGCGGTCGGTTTTGTATTTTTATTGGTGGGTGCACGA
TTGTAGGGAGGAAGAGAGGGGATGGCGAGGAAGAGGGAGGAGGGGGAGGG
AAGAGGACGAAGCTTATTAACTCACACAAAGGAATGAAAATGAGAGGGAC
TGGAGTGGCAGGAGCAGCTGTAGCAGGAGTAGTAGCAGCAGCAGTTGCAG
CAGCCGTAGCAACTGGGAAAGGAAAAGTAGCAACATGCTTTCACAGCAAC
AGCTCGTATTATCATCTGCGTTTTGATCGTTATTTAATTACCGGTGGCTT
TGATCCTTTTTCTTGTCATTGTTGTTGGTGGGGTAGTAGCTGTTGCTGCT
GCTGCGGCAGTGGCTGCTATTTCTCGCTCTGGTGTGTCCACATGGGATTT
GAATGTATTTCTCTTGTCTTGAATGGTGCAGGCACATGCCAATCGGCCAG
TCTCTTCCCTTTCTTCTGCTTCTCTTTCTTTCTCTCTCTCTCGTCCTCTT
TTCCTCACTTCCTCATTCTCTTGATGTTTCTCGCTCTCGGTCAGTGGCAA
TTTGTCTTTGCCCCGTCGTTCCAATTTGATTTTAAGCATTTCTTCTCTAA
AAAAGAGATTTCTCGTATTGGGATTTGATTTTTCTCATGTATAAACCGTT
CATCCTCATTCTTTCTCTCACTTTCCCTCAATTCATCTCTCCATCTCTCC
CTCTCTAACTCTCCGTATTTCTCTCTCTTGTTCTTCTTTCATTATTTTTA
TTCTTAAATCTCCTTTGGTTGTGAATTGCTGGCTTCATGTCCTCGTGCAT
TTCTTTCTCTTCCTCGCTGGTACTGGTCTG
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protein sequence of jgi.p|Nanoce1779_2|40652

>mRNA_5889-protein ID=mRNA_5889-protein|Name=jgi.p|Nanoce1779_2|40652|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MKMRGTGVAGAAVAGVVAAAVAAAVATGKGKVATCFHSNSSYYHLRFDRY
LITGGFDPFSCHCCWWGSSCCCCCGSGCYFSLWCVHMGFECISLVLNGAG
TCQSASLFPFFCFSFFLSLSSSFPHFLILLMFLALGQWQFVFAPSFQFDF
KHFFSKKEISRIGI*
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mRNA from alignment at scaffold_11:853690..854593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5889 ID=mRNA_5889|Name=jgi.p|Nanoce1779_2|40652|organism=Nannochloropsis oceanica|type=mRNA|length=904bp|location=Sequence derived from alignment at scaffold_11:853690..854593+ (Nannochloropsis oceanica)
GATGTCGCGAGAGGCGCATTTCCCTCTTTGAGTTAGACCATCTCATGTAG
GGAGCGTTGGGGGGGGGGAGGGAGGGAGGGAAGGAGGGGCGGTCGGTTTT
GTATTTTTATTGGTGGGTGCACGATTGTAGGGAGGAAGAGAGGGGATGGC
GAGGAAGAGGGAGGAGGGGGAGGGAAGAGGACGAAGCTTATTAACTCACA
CAAAGGAATGAAAATGAGAGGGACTGGAGTGGCAGGAGCAGCTGTAGCAG
GAGTAGTAGCAGCAGCAGTTGCAGCAGCCGTAGCAACTGGGAAAGGAAAA
GTAGCAACATGCTTTCACAGCAACAGCTCGTATTATCATCTGCGTTTTGA
TCGTTATTTAATTACCGGTGGCTTTGATCCTTTTTCTTGTCATTGTTGTT
GGTGGGGTAGTAGCTGTTGCTGCTGCTGCGGCAGTGGCTGCTATTTCTCG
CTCTGGTGTGTCCACATGGGATTTGAATGTATTTCTCTTGTCTTGAATGG
TGCAGGCACATGCCAATCGGCCAGTCTCTTCCCTTTCTTCTGCTTCTCTT
TCTTTCTCTCTCTCTCGTCCTCTTTTCCTCACTTCCTCATTCTCTTGATG
TTTCTCGCTCTCGGTCAGTGGCAATTTGTCTTTGCCCCGTCGTTCCAATT
TGATTTTAAGCATTTCTTCTCTAAAAAAGAGATTTCTCGTATTGGGATTT
GATTTTTCTCATGTATAAACCGTTCATCCTCATTCTTTCTCTCACTTTCC
CTCAATTCATCTCTCCATCTCTCCCTCTCTAACTCTCCGTATTTCTCTCT
CTTGTTCTTCTTTCATTATTTTTATTCTTAAATCTCCTTTGGTTGTGAAT
TGCTGGCTTCATGTCCTCGTGCATTTCTTTCTCTTCCTCGCTGGTACTGG
TCTG
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Coding sequence (CDS) from alignment at scaffold_11:853690..854593+

>mRNA_5889 ID=mRNA_5889|Name=jgi.p|Nanoce1779_2|40652|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_11:853690..854593+ (Nannochloropsis oceanica)
ATGAAAATGAGAGGGACTGGAGTGGCAGGAGCAGCTGTAGCAGGAGTAGT
AGCAGCAGCAGTTGCAGCAGCCGTAGCAACTGGGAAAGGAAAAGTAGCAA
CATGCTTTCACAGCAACAGCTCGTATTATCATCTGCGTTTTGATCGTTAT
TTAATTACCGGTGGCTTTGATCCTTTTTCTTGTCATTGTTGTTGGTGGGG
TAGTAGCTGTTGCTGCTGCTGCGGCAGTGGCTGCTATTTCTCGCTCTGGT
GTGTCCACATGGGATTTGAATGTATTTCTCTTGTCTTGAATGGTGCAGGC
ACATGCCAATCGGCCAGTCTCTTCCCTTTCTTCTGCTTCTCTTTCTTTCT
CTCTCTCTCGTCCTCTTTTCCTCACTTCCTCATTCTCTTGATGTTTCTCG
CTCTCGGTCAGTGGCAATTTGTCTTTGCCCCGTCGTTCCAATTTGATTTT
AAGCATTTCTTCTCTAAAAAAGAGATTTCTCGTATTGGGATTTGA
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Synonyms
Publications