jgi.p|Nanoce1779_2|40588, mRNA_5887 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|40588
Unique NamemRNA_5887
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1133
Alignment locationscaffold_11:846778..848139 -

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Properties
Property NameValue
TranscriptId40674
TrackFilteredModels2
ProteinId40588
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:846778..848139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|40588gene_5887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|40588mRNA_5887-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5887CDS_5887Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5887 ID=mRNA_5887|Name=jgi.p|Nanoce1779_2|40588|organism=Nannochloropsis oceanica|type=mRNA|length=1133bp
TCATTATCCCCCACAGGAGCAGTACCAGTACCAGCACCAACTCACGCAAC
GTCAGCAGGGGCAGACCCAGGAGGATCAGCAGCGGCCGAGGGCGCGTCTC
TTACCGAGAGCTACGCCCGCTCTCTCTTCCCGAACTAGAATAGGCCCGCG
AGATGGACAAACAGATGGATTTTCCTTCGTCCTCCAACAATGGGACGACA
TCGCCTCCCTCCACGGCTGCAGCTGCAGGAGCACGCTCATCCCCTTCTCC
TCCGCCGCCATCGAGTGCGCATCGACCAACGCAAGCACCGGAGGCAGGAA
TGGGTGGCAGCAGCGTTATGGCATCTTCATTTTCCCCTGTTTCTTCCTCT
ACCCCTAGCGTTCAAGTGGTCTCTCGTGCGTCGCCTACAAGGCTGATAAG
CCCTCCTCCCCCCCGGGCAGCAGGAGGAGGAGGGCGGGAGGAAGGGAGGG
ATAGGGTTGGCAGTAGGGATATTATGACACCGCCGATGTCTTCGCCTGCT
GGGCCAGGGATGGGAGGAGGGAGAGGAGACAGTGGAGGAGAGGGAGGGGA
GGAGGGAGGAAGGCACTTCCATAGCGAGGGGGGTGAAGAACACATTCCGG
TAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGCGAAGGAGAAAGAGGGGAT
TCTCAAGCCAGGAGCAGCGTCCTGTTGGACTGGTGGGCTAATGGCTCTAT
CGACCACTCTTTTATGTACACCACCAGCTTGATCATCCCCCCCACCCACT
CCGTCCCTCCCTCCCTCCCTCGTTACGCACACACTCCCTCCACCATCCAC
ACCAGATTCCCGACTCAGTAGACGGTTACGAGGTCAGCGGCACGCTTTTT
AAAAAGCGCGGTGGGTGGGGCAAGCACTTGGGATGGCGGCCGCGTGCCTT
CACTCTGTACGCGGGGTACATGTGCTATTACGAAGCGGACAGTCTGCGTG
AGGTGGAGGACAAGACGCTGCGGCATCCCCGGGGCTGGTTGCGCTTGGAG
GGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGAGGCGGCGGGTATGAGCGA
CAAGATGGGAGGGGGCGTTGAAGCGGAAGGGGAAGGAGGGAGGGGGAAAT
GGGGCTTCCACGTGTCAAGCCATCGGGGGCACG
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protein sequence of jgi.p|Nanoce1779_2|40588

>mRNA_5887-protein ID=mRNA_5887-protein|Name=jgi.p|Nanoce1779_2|40588|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MDKQMDFPSSSNNGTTSPPSTAAAAGARSSPSPPPPSSAHRPTQAPEAGM
GGSSVMASSFSPVSSSTPSVQVVSRASPTRLISPPPPRAAGGGGREEGRD
RVGSRDIMTPPMSSPAGPGMGGGRGDSGGEGGEEGGRHFHSEGGEEHIPV
GREGGRKGGSEGERGDSQARSSVLLDWWANGSIDHSFMYTTSLIIPPTHS
VPPSLPRYAHTPSTIHTRFPTQ*
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mRNA from alignment at scaffold_11:846778..848139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5887 ID=mRNA_5887|Name=jgi.p|Nanoce1779_2|40588|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_11:846778..848139- (Nannochloropsis oceanica)
TCATTATCCCCCACAGGAGCAGTACCAGTACCAGCACCAACTCACGCAAC
GTCAGCAGGGGCAGACCCAGGAGGATCAGCAGCGGCCGAGGGCGCGTCTC
TTACCGAGAGCTACGTAAGGATTACCTCTCCTTCCCCCCTTCCTCCCCTC
CCCCCGTCCGTCCTCTTTCTCCCTCCCAAGCTACCCTCGCTCAAGTCTTA
CCTAAACCATCTTCCCCGAACTAGAATAGGCCCGCTCTCTCTTCCCGAAC
TAGAATAGGCCCGCGAGATGGACAAACAGATGGATTTTCCTTCGTCCTCC
AACAATGGGACGACATCGCCTCCCTCCACGGCTGCAGCTGCAGGAGCACG
CTCATCCCCTTCTCCTCCGCCGCCATCGAGTGCGCATCGACCAACGCAAG
CACCGGAGGCAGGAATGGGTGGCAGCAGCGTTATGGCATCTTCATTTTCC
CCTGTTTCTTCCTCTACCCCTAGCGTTCAAGTGGTCTCTCGTGCGTCGCC
TACAAGGCTGATAAGCCCTCCTCCCCCCCGGGCAGCAGGAGGAGGAGGGC
GGGAGGAAGGGAGGGATAGGGTTGGCAGTAGGGATATTATGACACCGCCG
ATGTCTTCGCCTGCTGGGCCAGGGATGGGAGGAGGGAGAGGAGACAGTGG
AGGAGAGGGAGGGGAGGAGGGAGGAAGGCACTTCCATAGCGAGGGGGGTG
AAGAACACATTCCGGTAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGCGAA
GGAGAAAGAGGGGATTCTCAAGCCAGGAGCAGCGTCCTGTTGGACTGGTG
GGCTAATGGCTCTATCGACCACTCTTTTATGTACACCACCAGCTTGATCA
TCCCCCCCACCCACTCCGTCCCTCCCTCCCTCCCTCGTTACGCACACACT
CCCTCCACCATCCACACCAGATTCCCGACTCAGTAGACGGTTACGAGGTC
AGCGGCACGCTTTTTAAAAAGGCAAGCTTCTCTCCCTCCCTCCCTCCCTT
CCTCCCTCCCTTCCTTCCTGGTCTCACGCCCACCCCTCCTTCGCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTCCTCCTGCTAGCGCGGTGGGTGGGGC
AAGCACTTGGGATGGCGGCCGCGTGCCTTCACTCTGTACGCGGGGTACAT
GTGCTATTACGAAGCGGACAGTCTGCGTGAGGTGGAGGACAAGACGCTGC
GGCATCCCCGGGGCTGGTTGCGCTTGGAGGGAGGGAAGGAGGGAGGGAAG
GAGGGAGGGGAGGCGGCGGGTATGAGCGACAAGATGGGAGGGGGCGTTGA
AGCGGAAGGGGAAGGAGGGAGGGGGAAATGGGGCTTCCACGTGTCAAGCC
ATCGGGGGCACG
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Coding sequence (CDS) from alignment at scaffold_11:846778..848139-

>mRNA_5887 ID=mRNA_5887|Name=jgi.p|Nanoce1779_2|40588|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_11:846778..848139- (Nannochloropsis oceanica)
ATGGACAAACAGATGGATTTTCCTTCGTCCTCCAACAATGGGACGACATC
GCCTCCCTCCACGGCTGCAGCTGCAGGAGCACGCTCATCCCCTTCTCCTC
CGCCGCCATCGAGTGCGCATCGACCAACGCAAGCACCGGAGGCAGGAATG
GGTGGCAGCAGCGTTATGGCATCTTCATTTTCCCCTGTTTCTTCCTCTAC
CCCTAGCGTTCAAGTGGTCTCTCGTGCGTCGCCTACAAGGCTGATAAGCC
CTCCTCCCCCCCGGGCAGCAGGAGGAGGAGGGCGGGAGGAAGGGAGGGAT
AGGGTTGGCAGTAGGGATATTATGACACCGCCGATGTCTTCGCCTGCTGG
GCCAGGGATGGGAGGAGGGAGAGGAGACAGTGGAGGAGAGGGAGGGGAGG
AGGGAGGAAGGCACTTCCATAGCGAGGGGGGTGAAGAACACATTCCGGTA
GGGAGGGAGGGAGGGAGGAAAGGAGGGAGCGAAGGAGAAAGAGGGGATTC
TCAAGCCAGGAGCAGCGTCCTGTTGGACTGGTGGGCTAATGGCTCTATCG
ACCACTCTTTTATGTACACCACCAGCTTGATCATCCCCCCCACCCACTCC
GTCCCTCCCTCCCTCCCTCGTTACGCACACACTCCCTCCACCATCCACAC
CAGATTCCCGACTCAGTAG
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Synonyms
Publications