|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 590781 |
| Track | FilteredModels2 |
| ProteinId | 590695 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:843427..845759 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5886 ID=mRNA_5886|Name=jgi.p|Nanoce1779_2|590695|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
GGAGGAGGGCGGGGGGGAAGAAGGGGGAGAGGGGCCGGAGGAGGAACTGC
CTGAGCATACGTGGAGCCTCGGGGATGCGGCTCATTTCAAGGTTCGTATG
GGGCCTAACTACCGCCAGACGGGGCGCAAGGAAGCCTCAGGTCCCGCCCT
CTTCACACTGCTCCATTTGGACATCTACAAAACGCCATGTCGGATCGGCG
GCATCGCATCCCTCCTTCCCTCCCTACCCCCCGTGCCCCCCACCTCCGTC
CCGCCCTCCTCGTCTTCCGTCCCGCCCCTCGTCATCATCAACTGCCAGCT
TCCGTCCGAGGCTCCCGTGCTCCTCAACATGAGTGAAGATGGGCCGGGCT
ATAACGTCATCTTCTATTTCGCCTGCACGGAGGAGACGGCCAAGGCCCTC
CACGACCTTCCCTCCGCCTCTCCCGCCGTCCGTTTAATCGACGAATATTT
CCGCCTCGCGCCCACCTCCCCTGACTTCAGAGGCAGATTCAAAGCCATGG
CGCAGGTCCACGACATTGGTAAGCTCGGTCTGCCCGGCTTCATCGAGAAA
TACAACGGAAAACCGACCCTCATCACCAAAAGCGGGATACTGACCACAGG
GCCGGGCTATGCTGAGATGGACATAAACGTACACCGTTTCGGCTTCCCCG
CCAAACGCGGCCTCTACCACCTCCAAGAAAAATTCAAAGACATCGTGTTT
GAGATCGGCTTCATTATAGAAGGAAGGGATGACGTGGAGCTGCCTGAGGT
CATGCTGGCCGTGGCGCAATTTAATTATATCGATGTCAAACGTGCGCATG
ACTTGATGTAACCATGATGGATAAATGCACGCCAGCCCATCGTCCTTTTC
GTTTTATTCTTAATAAATCTAATTTAGTCTTTGTGCGGATGATTTTTGAT
GGAGCGGGGGCTGCAATGGCTTTGAGTGATGTATGTGCAGGGAGGGGCAG
AAACGAAGGAAGGAGAGAGGGAGGTGTGAAGAGAGACAGACCCATGTATC
TTGAAAAAAGGGTTCCGAAAATCTGGGGAGAAGTTGTCTTCGTCTGTTTA
CACAGTAGAGGCCCCTACAAAGAGGGAGAGAGGGAGGGAGGGAGGGAGGA
AGCAAGGAGGCCAGTCAAATGAAGGGGAGCGACAAGATGAAAAAAGTTAA
CACGCACTCATTCACA back to topprotein sequence of jgi.p|Nanoce1779_2|590695 >mRNA_5886-protein ID=mRNA_5886-protein|Name=jgi.p|Nanoce1779_2|590695|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MGPNYRQTGRKEASGPALFTLLHLDIYKTPCRIGGIASLLPSLPPVPPTS
VPPSSSSVPPLVIINCQLPSEAPVLLNMSEDGPGYNVIFYFACTEETAKA
LHDLPSASPAVRLIDEYFRLAPTSPDFRGRFKAMAQVHDIGKLGLPGFIE
KYNGKPTLITKSGILTTGPGYAEMDINVHRFGFPAKRGLYHLQEKFKDIV
FEIGFIIEGRDDVELPEVMLAVAQFNYIDVKRAHDL back to topmRNA from alignment at scaffold_11:843427..845759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5886 ID=mRNA_5886|Name=jgi.p|Nanoce1779_2|590695|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at scaffold_11:843427..845759- (Nannochloropsis oceanica)
GGAGGAGGGCGGGGGGGAAGAAGGGGGAGAGGGGCCGGAGGAGGAACTGC
CTGAGCATACGTGGAGCCTCGGGGATGCGGCTCATTTCAAGGTAGAGGGA
GGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGTTC
CAATGACAAGAGCAGACAGAAGATGATTGTCCGCGTGCTTCCCCGTCAAC
TCCCCTCCCTCCCTTCTTCCCTCCCTCCTTCCCTCCCTCCTTAGGTTCGT
ATGGGGCCTAACTACCGCCAGACGGGGCGCAAGGAAGCCTCAGGTCCCGC
CCTCTTCACACTGCTCCATTTGGACATCTACAAAACGCCATGTCGGGTAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGAGGGAAAGTGTTCTAC
CTGGACATGAACAAAGCACCGTGTCGGGGAGGGGGGGGGGGGGGGGAGGG
AAAGTGCTCTACCTGGACATCAACAAGAGACCATCGTCGTGTTGGGGAAG
ATCGGACCGGTCGATCCTCCCGTGTCTTACCTTCTTTTTCCTCCCCTTTC
CCCTCCTCTTCCCTCCTCTTTCCTCCTCCTCTCCTCCCTTGTCTTCTCTC
TCCTCCTCCCTTGTCTTCCCCCCTCTCTTCCCTCTCTCTTCTATTTCCAG
ATCGGCGGCATCGCATCCCTCCTTCCCTCCCTACCCCCCGTGCCCCCCAC
CTCCGTCCCGCCCTCCTCGTCTTCCGTCCCGCCCCTCGTCATCATCAACT
GCCAGCTTCCGTCCGAGGCTCCCGTGCTCCTCAACATGAGTGAAGATGGG
CCGGGCTATAACGTCATCTTCTATTTCGCCTGCACGGAGGAGGTGAGCCA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGAGGGAGGGAGGGAGG
GAGGGAAGGGTTCAATTCGATTCGATACCCTGCGCTTTCAAACACGTGTT
GACGCTGCTCTTCTCCTCCACCCCCCTCCCTCCCTCCCTCCCTCCCTAGA
CGGCCAAGGCCCTCCACGACCTTCCCTCCGCCTCTCCCGCCGTCCGTTTA
ATCGACGAATATTTCCGCCTCGCGCCCACCTCCCCTGACTTCAGAGGCAG
ATTCAAAGCCATGGCGCAGGTGGGTCCCCTCATTCCCTCCCTCCCTCCCT
CCCTCCCACTAGGGGCATGACGTTCCTTCGTCCTGGCCTTCTTGTCTGCA
TGTCGGGCACTCACCTTCCCCCCCTCCCTCCCCCCCTCCCCCCCAGGTCC
ACGACATTGGTAAGCTCGGTCTGCCCGGCTTCATCGAGAAATACAACGGA
AAACCGACCCTCATCACCAAAAGCGGGATACTGACCACAGTACGTCCTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCTCTGCCGGGCCTGGATGACACCAACGACCTACCATGACAAGAACCA
GCCACCGAATCTTTCGCCTCCTCACTACTCACCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCCCCTTCTCCCAGGGGCCGGGCTATGC
TGAGATGGACATAAACGTACACCGTTTCGGCTTCCCCGCCAAACGCGGCC
TCTACCACCTCCAAGAAAAATTCAAAGACATCGTGTTTGAGGTACGTCTC
ACTCCCTTTCCCTCCCTTCCTCCTCCATCCCTCCCTCCTTTCCCCTCCCT
TCCTCCCTCTCTCCTGCTCCCGCCTTCGCTCACTATACCTGCCTGACGTG
GCCCCCTCCACTTGCCTTGAACAAACGTTCAACGATATAATCACCTTTGA
GCCACCCCTTCCTTATCCCCCTCTCTTTCCCTCCCTCCCTCCCTACCTCT
CTCCCTCCCTCCCTCTCTAGATCGGCTTCATTATAGAAGGAAGGGATGAC
GTGGAGCTGCCTGAGGTCATGCTGGCCGTGGCGCAATTTAATTATATCGA
TGTCAAACGTGCGCATGACTTGATGTAACCATGATGGATAAATGCACGCC
AGCCCATCGTCCTTTTCGTTTTATTCTTAATAAATCTAATTTAGTCTTTG
TGCGGATGATTTTTGATGGAGCGGGGGCTGCAATGGCTTTGAGTGATGTA
TGTGCAGGGAGGGGCAGAAACGAAGGAAGGAGAGAGGGAGGTGTGAAGAG
AGACAGACCCATGTATCTTGAAAAAAGGGTTCCGAAAATCTGGGGAGAAG
TTGTCTTCGTCTGTTTACACAGTAGAGGCCCCTACAAAGAGGGAGAGAGG
GAGGGAGGGAGGGAGGAAGCAAGGAGGCCAGTCAAATGAAGGGGAGCGAC
AAGATGAAAAAAGTTAACACGCACTCATTCACA back to topCoding sequence (CDS) from alignment at scaffold_11:843427..845759- >mRNA_5886 ID=mRNA_5886|Name=jgi.p|Nanoce1779_2|590695|organism=Nannochloropsis oceanica|type=CDS|length=4254bp|location=Sequence derived from alignment at scaffold_11:843427..845759- (Nannochloropsis oceanica)
ATCGGCTTCATTATAGAAGGAAGGGATGACGTGGAGCTGCCTGAGGTCAT
GCTGGCCGTGGCGCAATTTAATTATATCGATGTCAAACGTGCGCATGACT
TGAGGGCCGGGCTATGCTGAGATGGACATAAACGTACACCGTTTCGGCTT
CCCCGCCAAACGCGGCCTCTACCACCTCCAAGAAAAATTCAAAGACATCG
TGTTTGAGGTCCACGACATTGGTAAGCTCGGTCTGCCCGGCTTCATCGAG
AAATACAACGGAAAACCGACCCTCATCACCAAAAGCGGGATACTGACCAC
AACGGCCAAGGCCCTCCACGACCTTCCCTCCGCCTCTCCCGCCGTCCGTT
TAATCGACGAATATTTCCGCCTCGCGCCCACCTCCCCTGACTTCAGAGGC
AGATTCAAAGCCATGGCGCAGATCGGCGGCATCGCATCCCTCCTTCCCTC
CCTACCCCCCGTGCCCCCCACCTCCGTCCCGCCCTCCTCGTCTTCCGTCC
CGCCCCTCGTCATCATCAACTGCCAGCTTCCGTCCGAGGCTCCCGTGCTC
CTCAACATGAGTGAAGATGGGCCGGGCTATAACGTCATCTTCTATTTCGC
CTGCACGGAGGAGATGGGGCCTAACTACCGCCAGACGGGGCGCAAGGAAG
CCTCAGGTCCCGCCCTCTTCACACTGCTCCATTTGGACATCTACAAAACG
CCATGTCGGATCGGCTTCATTATAGAAGGAAGGGATGACGTGGAGCTGCC
TGAGGTCATGCTGGCCGTGGCGCAATTTAATTATATCGATGTCAAACGTG
CGCATGACTTGAGGGCCGGGCTATGCTGAGATGGACATAAACGTACACCG
TTTCGGCTTCCCCGCCAAACGCGGCCTCTACCACCTCCAAGAAAAATTCA
AAGACATCGTGTTTGAGGTCCACGACATTGGTAAGCTCGGTCTGCCCGGC
TTCATCGAGAAATACAACGGAAAACCGACCCTCATCACCAAAAGCGGGAT
ACTGACCACAACGGCCAAGGCCCTCCACGACCTTCCCTCCGCCTCTCCCG
CCGTCCGTTTAATCGACGAATATTTCCGCCTCGCGCCCACCTCCCCTGAC
TTCAGAGGCAGATTCAAAGCCATGGCGCAGATCGGCGGCATCGCATCCCT
CCTTCCCTCCCTACCCCCCGTGCCCCCCACCTCCGTCCCGCCCTCCTCGT
CTTCCGTCCCGCCCCTCGTCATCATCAACTGCCAGCTTCCGTCCGAGGCT
CCCGTGCTCCTCAACATGAGTGAAGATGGGCCGGGCTATAACGTCATCTT
CTATTTCGCCTGCACGGAGGAGATGGGGCCTAACTACCGCCAGACGGGGC
GCAAGGAAGCCTCAGGTCCCGCCCTCTTCACACTGCTCCATTTGGACATC
TACAAAACGCCATGTCGGATCGGCTTCATTATAGAAGGAAGGGATGACGT
GGAGCTGCCTGAGGTCATGCTGGCCGTGGCGCAATTTAATTATATCGATG
TCAAACGTGCGCATGACTTGAGGGCCGGGCTATGCTGAGATGGACATAAA
CGTACACCGTTTCGGCTTCCCCGCCAAACGCGGCCTCTACCACCTCCAAG
AAAAATTCAAAGACATCGTGTTTGAGGTCCACGACATTGGTAAGCTCGGT
CTGCCCGGCTTCATCGAGAAATACAACGGAAAACCGACCCTCATCACCAA
AAGCGGGATACTGACCACAACGGCCAAGGCCCTCCACGACCTTCCCTCCG
CCTCTCCCGCCGTCCGTTTAATCGACGAATATTTCCGCCTCGCGCCCACC
TCCCCTGACTTCAGAGGCAGATTCAAAGCCATGGCGCAGATCGGCGGCAT
CGCATCCCTCCTTCCCTCCCTACCCCCCGTGCCCCCCACCTCCGTCCCGC
CCTCCTCGTCTTCCGTCCCGCCCCTCGTCATCATCAACTGCCAGCTTCCG
TCCGAGGCTCCCGTGCTCCTCAACATGAGTGAAGATGGGCCGGGCTATAA
CGTCATCTTCTATTTCGCCTGCACGGAGGAGATGGGGCCTAACTACCGCC
AGACGGGGCGCAAGGAAGCCTCAGGTCCCGCCCTCTTCACACTGCTCCAT
TTGGACATCTACAAAACGCCATGTCGGATCGGCTTCATTATAGAAGGAAG
GGATGACGTGGAGCTGCCTGAGGTCATGCTGGCCGTGGCGCAATTTAATT
ATATCGATGTCAAACGTGCGCATGACTTGAGGGCCGGGCTATGCTGAGAT
GGACATAAACGTACACCGTTTCGGCTTCCCCGCCAAACGCGGCCTCTACC
ACCTCCAAGAAAAATTCAAAGACATCGTGTTTGAGGTCCACGACATTGGT
AAGCTCGGTCTGCCCGGCTTCATCGAGAAATACAACGGAAAACCGACCCT
CATCACCAAAAGCGGGATACTGACCACAACGGCCAAGGCCCTCCACGACC
TTCCCTCCGCCTCTCCCGCCGTCCGTTTAATCGACGAATATTTCCGCCTC
GCGCCCACCTCCCCTGACTTCAGAGGCAGATTCAAAGCCATGGCGCAGAT
CGGCGGCATCGCATCCCTCCTTCCCTCCCTACCCCCCGTGCCCCCCACCT
CCGTCCCGCCCTCCTCGTCTTCCGTCCCGCCCCTCGTCATCATCAACTGC
CAGCTTCCGTCCGAGGCTCCCGTGCTCCTCAACATGAGTGAAGATGGGCC
GGGCTATAACGTCATCTTCTATTTCGCCTGCACGGAGGAGATGGGGCCTA
ACTACCGCCAGACGGGGCGCAAGGAAGCCTCAGGTCCCGCCCTCTTCACA
CTGCTCCATTTGGACATCTACAAAACGCCATGTCGGATCGGCTTCATTAT
AGAAGGAAGGGATGACGTGGAGCTGCCTGAGGTCATGCTGGCCGTGGCGC
AATTTAATTATATCGATGTCAAACGTGCGCATGACTTGAGGGCCGGGCTA
TGCTGAGATGGACATAAACGTACACCGTTTCGGCTTCCCCGCCAAACGCG
GCCTCTACCACCTCCAAGAAAAATTCAAAGACATCGTGTTTGAGGTCCAC
GACATTGGTAAGCTCGGTCTGCCCGGCTTCATCGAGAAATACAACGGAAA
ACCGACCCTCATCACCAAAAGCGGGATACTGACCACAACGGCCAAGGCCC
TCCACGACCTTCCCTCCGCCTCTCCCGCCGTCCGTTTAATCGACGAATAT
TTCCGCCTCGCGCCCACCTCCCCTGACTTCAGAGGCAGATTCAAAGCCAT
GGCGCAGATCGGCGGCATCGCATCCCTCCTTCCCTCCCTACCCCCCGTGC
CCCCCACCTCCGTCCCGCCCTCCTCGTCTTCCGTCCCGCCCCTCGTCATC
ATCAACTGCCAGCTTCCGTCCGAGGCTCCCGTGCTCCTCAACATGAGTGA
AGATGGGCCGGGCTATAACGTCATCTTCTATTTCGCCTGCACGGAGGAGA
TGGGGCCTAACTACCGCCAGACGGGGCGCAAGGAAGCCTCAGGTCCCGCC
CTCTTCACACTGCTCCATTTGGACATCTACAAAACGCCATGTCGGATCGG
CTTCATTATAGAAGGAAGGGATGACGTGGAGCTGCCTGAGGTCATGCTGG
CCGTGGCGCAATTTAATTATATCGATGTCAAACGTGCGCATGACTTGAGG
GCCGGGCTATGCTGAGATGGACATAAACGTACACCGTTTCGGCTTCCCCG
CCAAACGCGGCCTCTACCACCTCCAAGAAAAATTCAAAGACATCGTGTTT
GAGGTCCACGACATTGGTAAGCTCGGTCTGCCCGGCTTCATCGAGAAATA
CAACGGAAAACCGACCCTCATCACCAAAAGCGGGATACTGACCACAACGG
CCAAGGCCCTCCACGACCTTCCCTCCGCCTCTCCCGCCGTCCGTTTAATC
GACGAATATTTCCGCCTCGCGCCCACCTCCCCTGACTTCAGAGGCAGATT
CAAAGCCATGGCGCAGATCGGCGGCATCGCATCCCTCCTTCCCTCCCTAC
CCCCCGTGCCCCCCACCTCCGTCCCGCCCTCCTCGTCTTCCGTCCCGCCC
CTCGTCATCATCAACTGCCAGCTTCCGTCCGAGGCTCCCGTGCTCCTCAA
CATGAGTGAAGATGGGCCGGGCTATAACGTCATCTTCTATTTCGCCTGCA
CGGAGGAGATGGGGCCTAACTACCGCCAGACGGGGCGCAAGGAAGCCTCA
GGTCCCGCCCTCTTCACACTGCTCCATTTGGACATCTACAAAACGCCATG
TCGG back to top
|