jgi.p|Nanoce1779_2|555767, mRNA_5884 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|555767
Unique Name	mRNA_5884
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1302
Alignment location	scaffold_11:834337..835963 -

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Properties


Property Name	Value
TranscriptId	555853
Track	FilteredModels2
ProteinId	555767

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:834337..835963 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555767	gene_5884	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555767	mRNA_5884-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5884	CDS_5884	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:834337..835963-
coding sequence from alignment at scaffold_11:834337..835963-

mRNA sequence

>mRNA_5884 ID=mRNA_5884|Name=jgi.p|Nanoce1779_2|555767|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ATGTGGTCCATCTTCATTTTGTTGAAGCTGTGGTCGTTTTCCACCACCGC
CGACGCCCACCGCCGGCACAAGGGGGAGACGCTGGAAGCCATTACCTTCT
CCAGCTACATCTATTTTTTGTTTGCGCCGACATTTATCTACCAGACGTCC
TACCCCCGAACCCGCTCCATCGACTGGGAGCACGTCCGAAGCTTGGTCTT
GCAGCTCGTCGGCGTGGGATTGATTGTCAAAGTGCTGGCTGTCGAGTGGA
TGTTTCCGGTGTTGGAAGCCCATGTAGGCCACGTGACAGCCCATAAGTAC
CATCTCGTGCTGCTGGGGGCTCTACGACTGGCGTTCCCGTGCGCAGTGGC
CTGGCTGCTTTCGGTTGGCTATGGCGTCTTCCATCTCTACACGAACTTGA
TTGCAGAATTGACACGATTCGGGGACCGCACCTTCTACCGGGAGTGGTGG
AACGTCAACACTCTCCGGGATTACTGGCGTCTATGGAATGCTCCCATGTC
TTTTTTCTTCAAGAGGCACGTCCTTTTCCCCCTCTACCGGCTTGGCGAAC
AGGGGGAGATTTTCCTGCGAGAGCATTTCTGCATGGGAAGCTTTACAATC
ATCTTTCTCTTGTCGGCATTCTTGCATGAAATTGTCATGGTGGTGCCTTT
TAACACCATCCAAGCCTACCGCGGCGTTTGCAATTTGTTTGGTCCATGGG
CCTTTTACGGCATTGCGGGACAGATCGGGGCTATACTGGCAACGGATCGG
TTGGCAAAGGCCGAGCCTTACCTCGGCAACGCTGTTTTCTGGACAATGTT
TTGCATCGTCGGGCAACCAATGGCAGTGCTACTCTATTATCACGACATCA
CCTCCTTCACCTCTTAGAAAGTTGAGGTGTGTGGATCACTCTGTATGTGT
GTACGTGTGTGTGTATTTATGCATGTGTTTTTGGGAGTGTGAGTGTATTT
GCCTACACGGACGTAACGTTGTGCGTACCTATGTGGGTGTTACTTATGTT
CCTCCACTGCGTCCATATGCGTGTATGTAATTTCGCTAGCTGGGATGGAG
AAAATATCAGGGGGTCAATTTTTAAGTTAAGTGCATTAGTTTATATATCA
GGAGGATGTGAAATCTCGTTCACAAAACACGTACAAAGCGTGAAGCTTTG
ATCCGTGCACGAACTGGGCCAATAAAACAGCAGGATAGAGGAGTAACAAA
GGGAGTGCAACCCTGCCTGGGGAAGGCAGCTGGGGGCCCCAATTGCCTAT
AAGAGATCATTTCAAGTAAAGCCCATGTTCTCATCAACGAAGCAAATGAA
GC

protein sequence of jgi.p|Nanoce1779_2|555767

>mRNA_5884-protein ID=mRNA_5884-protein|Name=jgi.p|Nanoce1779_2|555767|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MWSIFILLKLWSFSTTADAHRRHKGETLEAITFSSYIYFLFAPTFIYQTS
YPRTRSIDWEHVRSLVLQLVGVGLIVKVLAVEWMFPVLEAHVGHVTAHKY
HLVLLGALRLAFPCAVAWLLSVGYGVFHLYTNLIAELTRFGDRTFYREWW
NVNTLRDYWRLWNAPMSFFFKRHVLFPLYRLGEQGEIFLREHFCMGSFTI
IFLLSAFLHEIVMVVPFNTIQAYRGVCNLFGPWAFYGIAGQIGAILATDR
LAKAEPYLGNAVFWTMFCIVGQPMAVLLYYHDITSFTS*

mRNA from alignment at scaffold_11:834337..835963-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5884 ID=mRNA_5884|Name=jgi.p|Nanoce1779_2|555767|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp|location=Sequence derived from alignment at scaffold_11:834337..835963- (Nannochloropsis oceanica)
ATGTGGTCCATCTTCATTTTGTTGAAGCTGTGGTCGTTTTCCACCACCGC
CGACGCCCACCGCCGGCACAAGGGGGAGACGCTGGAAGCCATTACCTTCT
CCAGCTACATCTATTTTTTGTTTGCGCCGACATTTATCTACCAGACGTCC
TACCCCCGAACCCGCTCCATCGACTGGGAGCACGTCCGAAGCTTGGTCTT
GCAGCTCGTCGGCGTGGGATTGATTGTCAAAGTGCTGGCTGTCGAGTGGA
TGTTTCCGGTGTTGGAAGCCCATGTAGGCCACGTGACAGCCCATAAGTAC
CATCTCGTGCTGCTGGGGGCTCTACGACTGGCGTTCCCGTGCGCAGTGGC
CTGGCTGCTTTCGGTTGGCTATGGCGTCTTCCATCTCTACACGAACTTGA
TTGCAGAATTGACACGATTCGGGGACCGCACCTTCTACCGGGAGTGGTGG
AACGTCAACACTCTCCGGGATTACTGGCGTCTATGGAATGCTCCCATGTC
TTTTTTCTTCAAGAGGCACGTCCTTTTCCCCCTCTACCGGCTTGGCGAAC
AGGGGGAGATTTTCCTGCGAGAGCATTTCTGCGTCCGTTCCGCTTCCCTG
TCGATGAGGAAAAACGGACCGAGCGACTGTGTCAAGATGGGAAGCTTTAC
AATCATCTTTCTCTTGTCGGCATTCTTGCATGAAATTGTCATGGTGGTAC
GTCAAAGAGGGGGAGACCGGATGTTTTCTATGCATGGTCTCTTCCCTCTT
TTCCCGTGTTGAGGCACTCAACTCTCCCCTGACACACATGCAGCCCGTTC
GACTATTTACTTACTGAGGTGTCTTCCCCCACACATTTCTCCCCATCACC
GCGCAGGTGCCTTTTAACACCATCCAAGCCTACCGCGGCGTTTGCAATTT
GTTTGGTCCATGGGCCTTTTACGGCATTGCGGGACAGATCGGGGCTATAC
TGGCAACGGATCGGTTGGCAAAGGCCGAGCCTTACCTCGGCAACGCTGTT
TTCTGGACAATGTTTTGCATCGTCGGGCAACCAATGGCAGTAAGTGATGT
CTATGTGTATTGTACTTGTGCGTGCGTGTGTGTGGCCCAAACCAGTGTGT
ATGTACTTATTTTATCTCCTTATTTCCTCCCACTTTCCGAATAAAAATAG
GTGCTACTCTATTATCACGACATCACCTCCTTCACCTCTTAGAAAGTTGA
GGTGTGTGGATCACTCTGTATGTGTGTACGTGTGTGTGTATTTATGCATG
TGTTTTTGGGAGTGTGAGTGTATTTGCCTACACGGACGTAACGTTGTGCG
TACCTATGTGGGTGTTACTTATGTTCCTCCACTGCGTCCATATGCGTGTA
TGTAATTTCGCTAGCTGGGATGGAGAAAATATCAGGGGGTCAATTTTTAA
GTTAAGTGCATTAGTTTATATATCAGGAGGATGTGAAATCTCGTTCACAA
AACACGTACAAAGCGTGAAGCTTTGATCCGTGCACGAACTGGGCCAATAA
AACAGCAGGATAGAGGAGTAACAAAGGGAGTGCAACCCTGCCTGGGGAAG
GCAGCTGGGGGCCCCAATTGCCTATAAGAGATCATTTCAAGTAAAGCCCA
TGTTCTCATCAACGAAGCAAATGAAGC

Coding sequence (CDS) from alignment at scaffold_11:834337..835963-

>mRNA_5884 ID=mRNA_5884|Name=jgi.p|Nanoce1779_2|555767|organism=Nannochloropsis oceanica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_11:834337..835963- (Nannochloropsis oceanica)
GTGCTACTCTATTATCACGACATCACCTCCTTCACCTCTTAGGTGCCTTT
TAACACCATCCAAGCCTACCGCGGCGTTTGCAATTTGTTTGGTCCATGGG
CCTTTTACGGCATTGCGGGACAGATCGGGGCTATACTGGCAACGGATCGG
TTGGCAAAGGCCGAGCCTTACCTCGGCAACGCTGTTTTCTGGACAATGTT
TTGCATCGTCGGGCAACCAATGGCAATGGGAAGCTTTACAATCATCTTTC
TCTTGTCGGCATTCTTGCATGAAATTGTCATGGTGATGTGGTCCATCTTC
ATTTTGTTGAAGCTGTGGTCGTTTTCCACCACCGCCGACGCCCACCGCCG
GCACAAGGGGGAGACGCTGGAAGCCATTACCTTCTCCAGCTACATCTATT
TTTTGTTTGCGCCGACATTTATCTACCAGACGTCCTACCCCCGAACCCGC
TCCATCGACTGGGAGCACGTCCGAAGCTTGGTCTTGCAGCTCGTCGGCGT
GGGATTGATTGTCAAAGTGCTGGCTGTCGAGTGGATGTTTCCGGTGTTGG
AAGCCCATGTAGGCCACGTGACAGCCCATAAGTACCATCTCGTGCTGCTG
GGGGCTCTACGACTGGCGTTCCCGTGCGCAGTGGCCTGGCTGCTTTCGGT
TGGCTATGGCGTCTTCCATCTCTACACGAACTTGATTGCAGAATTGACAC
GATTCGGGGACCGCACCTTCTACCGGGAGTGGTGGAACGTCAACACTCTC
CGGGATTACTGGCGTCTATGGAATGCTCCCATGTCTTTTTTCTTCAAGAG
GCACGTCCTTTTCCCCCTCTACCGGCTTGGCGAACAGGGGGAGATTTTCC
TGCGAGAGCATTTCTGCGTGCTACTCTATTATCACGACATCACCTCCTTC
ACCTCTTAGGTGCCTTTTAACACCATCCAAGCCTACCGCGGCGTTTGCAA
TTTGTTTGGTCCATGGGCCTTTTACGGCATTGCGGGACAGATCGGGGCTA
TACTGGCAACGGATCGGTTGGCAAAGGCCGAGCCTTACCTCGGCAACGCT
GTTTTCTGGACAATGTTTTGCATCGTCGGGCAACCAATGGCAATGGGAAG
CTTTACAATCATCTTTCTCTTGTCGGCATTCTTGCATGAAATTGTCATGG
TGATGTGGTCCATCTTCATTTTGTTGAAGCTGTGGTCGTTTTCCACCACC
GCCGACGCCCACCGCCGGCACAAGGGGGAGACGCTGGAAGCCATTACCTT
CTCCAGCTACATCTATTTTTTGTTTGCGCCGACATTTATCTACCAGACGT
CCTACCCCCGAACCCGCTCCATCGACTGGGAGCACGTCCGAAGCTTGGTC
TTGCAGCTCGTCGGCGTGGGATTGATTGTCAAAGTGCTGGCTGTCGAGTG
GATGTTTCCGGTGTTGGAAGCCCATGTAGGCCACGTGACAGCCCATAAGT
ACCATCTCGTGCTGCTGGGGGCTCTACGACTGGCGTTCCCGTGCGCAGTG
GCCTGGCTGCTTTCGGTTGGCTATGGCGTCTTCCATCTCTACACGAACTT
GATTGCAGAATTGACACGATTCGGGGACCGCACCTTCTACCGGGAGTGGT
GGAACGTCAACACTCTCCGGGATTACTGGCGTCTATGGAATGCTCCCATG
TCTTTTTTCTTCAAGAGGCACGTCCTTTTCCCCCTCTACCGGCTTGGCGA
ACAGGGGGAGATTTTCCTGCGAGAGCATTTCTGCGTGCTACTCTATTATC
ACGACATCACCTCCTTCACCTCTTAGGTGCCTTTTAACACCATCCAAGCC
TACCGCGGCGTTTGCAATTTGTTTGGTCCATGGGCCTTTTACGGCATTGC
GGGACAGATCGGGGCTATACTGGCAACGGATCGGTTGGCAAAGGCCGAGC
CTTACCTCGGCAACGCTGTTTTCTGGACAATGTTTTGCATCGTCGGGCAA
CCAATGGCAATGGGAAGCTTTACAATCATCTTTCTCTTGTCGGCATTCTT
GCATGAAATTGTCATGGTGATGTGGTCCATCTTCATTTTGTTGAAGCTGT
GGTCGTTTTCCACCACCGCCGACGCCCACCGCCGGCACAAGGGGGAGACG
CTGGAAGCCATTACCTTCTCCAGCTACATCTATTTTTTGTTTGCGCCGAC
ATTTATCTACCAGACGTCCTACCCCCGAACCCGCTCCATCGACTGGGAGC
ACGTCCGAAGCTTGGTCTTGCAGCTCGTCGGCGTGGGATTGATTGTCAAA
GTGCTGGCTGTCGAGTGGATGTTTCCGGTGTTGGAAGCCCATGTAGGCCA
CGTGACAGCCCATAAGTACCATCTCGTGCTGCTGGGGGCTCTACGACTGG
CGTTCCCGTGCGCAGTGGCCTGGCTGCTTTCGGTTGGCTATGGCGTCTTC
CATCTCTACACGAACTTGATTGCAGAATTGACACGATTCGGGGACCGCAC
CTTCTACCGGGAGTGGTGGAACGTCAACACTCTCCGGGATTACTGGCGTC
TATGGAATGCTCCCATGTCTTTTTTCTTCAAGAGGCACGTCCTTTTCCCC
CTCTACCGGCTTGGCGAACAGGGGGAGATTTTCCTGCGAGAGCATTTCTG
CGTGCTACTCTATTATCACGACATCACCTCCTTCACCTCTTAGGTGCCTT
TTAACACCATCCAAGCCTACCGCGGCGTTTGCAATTTGTTTGGTCCATGG
GCCTTTTACGGCATTGCGGGACAGATCGGGGCTATACTGGCAACGGATCG
GTTGGCAAAGGCCGAGCCTTACCTCGGCAACGCTGTTTTCTGGACAATGT
TTTGCATCGTCGGGCAACCAATGGCAATGGGAAGCTTTACAATCATCTTT
CTCTTGTCGGCATTCTTGCATGAAATTGTCATGGTGATGTGGTCCATCTT
CATTTTGTTGAAGCTGTGGTCGTTTTCCACCACCGCCGACGCCCACCGCC
GGCACAAGGGGGAGACGCTGGAAGCCATTACCTTCTCCAGCTACATCTAT
TTTTTGTTTGCGCCGACATTTATCTACCAGACGTCCTACCCCCGAACCCG
CTCCATCGACTGGGAGCACGTCCGAAGCTTGGTCTTGCAGCTCGTCGGCG
TGGGATTGATTGTCAAAGTGCTGGCTGTCGAGTGGATGTTTCCGGTGTTG
GAAGCCCATGTAGGCCACGTGACAGCCCATAAGTACCATCTCGTGCTGCT
GGGGGCTCTACGACTGGCGTTCCCGTGCGCAGTGGCCTGGCTGCTTTCGG
TTGGCTATGGCGTCTTCCATCTCTACACGAACTTGATTGCAGAATTGACA
CGATTCGGGGACCGCACCTTCTACCGGGAGTGGTGGAACGTCAACACTCT
CCGGGATTACTGGCGTCTATGGAATGCTCCCATGTCTTTTTTCTTCAAGA
GGCACGTCCTTTTCCCCCTCTACCGGCTTGGCGAACAGGGGGAGATTTTC
CTGCGAGAGCATTTCTGC

Synonyms

Publications