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Properties
| Property Name | Value |
|---|
| TranscriptId | 528664 |
| Track | FilteredModels2 |
| ProteinId | 528578 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:824058..825153 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5881 ID=mRNA_5881|Name=jgi.p|Nanoce1779_2|528578|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGGTCGAGCACTTCACAGTCTCGGCGGTGGGGGTTTTAGAGCAGGGACG
GTTCCATACGTTGTTCACGGCCATGTTTAGTCACCAGAGCTTCACGCATT
TATTGGTGAATTGTGTCACGCTGTATTTCTTTGGCGCAGAGGCCGCCGTT
TTACTGGGAGCTCGGCGTTTCGTGAACCTCTATTTCGCCGGCGGTCTCGC
ATCATCCTTAGGCTGCGTCCTTTGGCCGTTCGTGGCACCCAAACTCCATA
TCCCGGCCTCCTACCGCGTCTCCAAGCATACAGTCGCCCTAGGAGCCTCG
GGTGCTGTGAACGCTCTCGTTGCTTGGTCTATCTTTATGTTCCCCACGCG
CATGGTGTACCTCTACTTGGTGCTGCCCGTGCCTGCCGCGTTGCTCGGTG
TCCTCTTCCTTGCCAAGGATCTCTCGGGACTCTATCAAGGGGGGTCTGGG
GAGGCCAATGCAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGATGAGGGAGGGAGGGCTGCCGCTGGGCAGCGTTGCCTTGGTTGTT
CTGTAGGGAGGGTGCATGAAGTATTTTTTTTTCAAAAATAG back to topprotein sequence of jgi.p|Nanoce1779_2|528578 >mRNA_5881-protein ID=mRNA_5881-protein|Name=jgi.p|Nanoce1779_2|528578|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MVEHFTVSAVGVLEQGRFHTLFTAMFSHQSFTHLLVNCVTLYFFGAEAAV
LLGARRFVNLYFAGGLASSLGCVLWPFVAPKLHIPASYRVSKHTVALGAS
GAVNALVAWSIFMFPTRMVYLYLVLPVPAALLGVLFLAKDLSGLYQGGSG
EANAGTEGGREGGREGGRDEGGRAAAGQRCLGCSVGRVHEVFFFQK* back to topmRNA from alignment at scaffold_11:824058..825153+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5881 ID=mRNA_5881|Name=jgi.p|Nanoce1779_2|528578|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp|location=Sequence derived from alignment at scaffold_11:824058..825153+ (Nannochloropsis oceanica)
ATGGTCGAGCACTTCACAGTCTCGGCGGTGGGGGTTTTAGAGCAGGGACG
GTTCCATACGTTGTTCACGGCCATGTTTAGTCACCAGAGCTTCACGCATT
TATTGGTGAATTGTGTCACGCTGTATTTCTTTGGCGCAGAGGGTAAGACG
AAGGAAGGGAAGAAGAAGGGGAAGGTCGAAGGGAGGACTGTTTTCTTTGT
TTTACGTTGTTGCCTCCATTTTCACTTATCCTCCTTCCCTCCTTTCCCGT
TCCTCCCCACCTCCCTCCCTCTCTTGTCAGCCGCCGTTTTACTGGGAGCT
CGGCGTTTCGTGAACCTCTATTTCGCCGGCGGTCTCGCATCATCCTTAGG
CTGCGTCCTTTGGCCGTTCGTGGCACCCAAGTACGCACCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCC
TCTATGTCCTTTCCTTCAACCAACCAACCAACCTCCCCCATCCCCCTCGT
CCTCCCTCCTTCCCTCCCTCCCAACGTGCCTCAGACTCCATATCCCGGCC
TCCTACCGCGTCTCCAAGCATACAGTCGCCCTAGGAGCCTCGGGTGCTGT
GAACGCTCTCGTTGCTTGGTCTATCTTTATGTTCCCCACGCGCATGGTGT
ACCTCTACTTGGTGCTGGTACGTGTGCTAGCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTTCCTTCCTCCCTTCCCTC
CCTTCGAATCAAACTTCCTCCCAATCCATTTTCCCTTCCCGCGAAGTGTC
CTCTTCCATCATACTGTACCAAGCCTTTTCCCACCCCCATCCTTCCCTCC
CTCCCCCCCTTCCTCGACCCTATCCTCCAGCCCGTGCCTGCCGCGTTGCT
CGGTGTCCTCTTCCTTGCCAAGGATCTCTCGGGACTCTATCAAGGGGGGT
CTGGGGAGGCCAATGCAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGATGAGGGAGGGAGGGCTGCCGCTGGGCAGCGTTGCCTTGG
TTGTTCTGTAGGGAGGGTGCATGAAGTATTTTTTTTTCAAAAATAG back to topCoding sequence (CDS) from alignment at scaffold_11:824058..825153+ >mRNA_5881 ID=mRNA_5881|Name=jgi.p|Nanoce1779_2|528578|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_11:824058..825153+ (Nannochloropsis oceanica)
ATGGTCGAGCACTTCACAGTCTCGGCGGTGGGGGTTTTAGAGCAGGGACG
GTTCCATACGTTGTTCACGGCCATGTTTAGTCACCAGAGCTTCACGCATT
TATTGGTGAATTGTGTCACGCTGTATTTCTTTGGCGCAGAGGCCGCCGTT
TTACTGGGAGCTCGGCGTTTCGTGAACCTCTATTTCGCCGGCGGTCTCGC
ATCATCCTTAGGCTGCGTCCTTTGGCCGTTCGTGGCACCCAAACTCCATA
TCCCGGCCTCCTACCGCGTCTCCAAGCATACAGTCGCCCTAGGAGCCTCG
GGTGCTGTGAACGCTCTCGTTGCTTGGTCTATCTTTATGTTCCCCACGCG
CATGGTGTACCTCTACTTGGTGCTGCCCGTGCCTGCCGCGTTGCTCGGTG
TCCTCTTCCTTGCCAAGGATCTCTCGGGACTCTATCAAGGGGGGTCTGGG
GAGGCCAATGCAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGATGAGGGAGGGAGGGCTGCCGCTGGGCAGCGTTGCCTTGGTTGTT
CTGTAGGGAGGGTGCATGAAGTATTTTTTTTTCAAAAATAGATGGTCGAG
CACTTCACAGTCTCGGCGGTGGGGGTTTTAGAGCAGGGACGGTTCCATAC
GTTGTTCACGGCCATGTTTAGTCACCAGAGCTTCACGCATTTATTGGTGA
ATTGTGTCACGCTGTATTTCTTTGGCGCAGAGGCCGCCGTTTTACTGGGA
GCTCGGCGTTTCGTGAACCTCTATTTCGCCGGCGGTCTCGCATCATCCTT
AGGCTGCGTCCTTTGGCCGTTCGTGGCACCCAAACTCCATATCCCGGCCT
CCTACCGCGTCTCCAAGCATACAGTCGCCCTAGGAGCCTCGGGTGCTGTG
AACGCTCTCGTTGCTTGGTCTATCTTTATGTTCCCCACGCGCATGGTGTA
CCTCTACTTGGTGCTGCCCGTGCCTGCCGCGTTGCTCGGTGTCCTCTTCC
TTGCCAAGGATCTCTCGGGACTCTATCAAGGGGGGTCTGGGGAGGCCAAT
GCAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGA
GGGAGGGAGGGCTGCCGCTGGGCAGCGTTGCCTTGGTTGTTCTGTAGGGA
GGGTGCATGAAGTATTTTTTTTTCAAAAATAGATGGTCGAGCACTTCACA
GTCTCGGCGGTGGGGGTTTTAGAGCAGGGACGGTTCCATACGTTGTTCAC
GGCCATGTTTAGTCACCAGAGCTTCACGCATTTATTGGTGAATTGTGTCA
CGCTGTATTTCTTTGGCGCAGAGGCCGCCGTTTTACTGGGAGCTCGGCGT
TTCGTGAACCTCTATTTCGCCGGCGGTCTCGCATCATCCTTAGGCTGCGT
CCTTTGGCCGTTCGTGGCACCCAAACTCCATATCCCGGCCTCCTACCGCG
TCTCCAAGCATACAGTCGCCCTAGGAGCCTCGGGTGCTGTGAACGCTCTC
GTTGCTTGGTCTATCTTTATGTTCCCCACGCGCATGGTGTACCTCTACTT
GGTGCTGCCCGTGCCTGCCGCGTTGCTCGGTGTCCTCTTCCTTGCCAAGG
ATCTCTCGGGACTCTATCAAGGGGGGTCTGGGGAGGCCAATGCAGGTACG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAGGGAGGGAG
GGCTGCCGCTGGGCAGCGTTGCCTTGGTTGTTCTGTAGGGAGGGTGCATG
AAGTATTTTTTTTTCAAAAATAGATGGTCGAGCACTTCACAGTCTCGGCG
GTGGGGGTTTTAGAGCAGGGACGGTTCCATACGTTGTTCACGGCCATGTT
TAGTCACCAGAGCTTCACGCATTTATTGGTGAATTGTGTCACGCTGTATT
TCTTTGGCGCAGAGGCCGCCGTTTTACTGGGAGCTCGGCGTTTCGTGAAC
CTCTATTTCGCCGGCGGTCTCGCATCATCCTTAGGCTGCGTCCTTTGGCC
GTTCGTGGCACCCAAACTCCATATCCCGGCCTCCTACCGCGTCTCCAAGC
ATACAGTCGCCCTAGGAGCCTCGGGTGCTGTGAACGCTCTCGTTGCTTGG
TCTATCTTTATGTTCCCCACGCGCATGGTGTACCTCTACTTGGTGCTGCC
CGTGCCTGCCGCGTTGCTCGGTGTCCTCTTCCTTGCCAAGGATCTCTCGG
GACTCTATCAAGGGGGGTCTGGGGAGGCCAATGCAGGTACGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAGGGAGGGAGGGCTGCCGC
TGGGCAGCGTTGCCTTGGTTGTTCTGTAGGGAGGGTGCATGAAGTATTTT
TTTTTCAAAAATAG back to top
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