jgi.p|Nanoce1779_2|577864, mRNA_588 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577864
Unique NamemRNA_588
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_3:1463847..1464783 -

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Properties
Property NameValue
TranscriptId577950
TrackFilteredModels2
ProteinId577864
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1463847..1464783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577864gene_588Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577864mRNA_588-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_588CDS_588Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_588 ID=mRNA_588|Name=jgi.p|Nanoce1779_2|577864|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
CACCTGGGAAGTGCGATGGAAGGAGAAGAGGGGGGCCATGATGGGCGAGG
AGAAAGCGAGGGAGGGACCGCGGGGAGAGGGGGTCAGGGAGAGCTTGAGG
TCCACAAGCTTGATGTCTTCCAGGGGATGGGGGAAGAGGAGGGAGGAGGA
GGAGGGGGAGGAGAGGGAGAGGGAGAGGAGGAGGTAGGTGGTGGAGGGGA
GAAGGGCACTGGGATTGGACGGGTGGAATAGCGTCGACAGCAAGGTCTGC
AGTCGGCTCACGGGCGACAAGGAGGAGAAAGAGGACGAGGAAGGGGCATT
GAAGAAGTCAATGACACGCCGCCGTATGCCCTTTCTCTTCGTCGCCTTCG
TCATTGCTGCCTCCCCTCCCTCCTCCTCGCCTTGCCCCCCTTCCTCGTCT
ACGGCCTCTAATCCCCGGTCGTCGGGGTCAGAGAGGCCCTTGACAAGACA
TAAGACCAACCGCTCTTTCGCCAGCTGTAGCGTTGCCCTCGCGCTCTCTT
TGGGGCCGGTGATGGAGGAGGAGACAGAGGAAGAGGGGCCGGACGAAGCG
GAGGCGGAGGACGGAGTGGAAATGGAGGAGGAGGGGGGGGGCAAAGAGGG
AGAGAAGAAGCGGTGAAGATCCATGATCAACCCGAAAACTTCCTCGCGCA
CTTCCAGGTCGGTGGTGGACGGGTTAGAGGCGAGGGTGACCAGGCTATGC
GACACCTTCCGCTCATCACCTAGGTAGCCTCCACTCAGCAACGCCTTGGC
TACCTGCAGCCTCAGCTCCTCCCCCCTCTCCTGCTCCCCCTCTCTCCCTC
CCTCCCCTGCTTTTGCGCCCATCATCT
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protein sequence of jgi.p|Nanoce1779_2|577864

>mRNA_588-protein ID=mRNA_588-protein|Name=jgi.p|Nanoce1779_2|577864|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MTRRRMPFLFVAFVIAASPPSSSPCPPSSSTASNPRSSGSERPLTRHKTN
RSFASCSVALALSLGPVMEEETEEEGPDEAEAEDGVEMEEEGGGKEGEKK
R*
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mRNA from alignment at scaffold_3:1463847..1464783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_588 ID=mRNA_588|Name=jgi.p|Nanoce1779_2|577864|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at scaffold_3:1463847..1464783- (Nannochloropsis oceanica)
CACCTGGGAAGTGCGATGGAAGGAGAAGAGGGGGGCCATGATGGGCGAGG
AGAAAGCGAGGGAGGGACCGCGGGGAGAGGGGGTCAGGGAGAGCTTGAGG
TCCACAAGCTTGATGTCTTCCAGGGGATGGGGGAAGAGGAGGGAGGAGGA
GGAGGGGGAGGAGAGGGAGAGGGAGAGGAGGAGGTAGGTGGTGGAGGGGA
GAAGGGCACTGGGATTGGACGGGTGGAATAGCGTCGACAGCAAGGTCTGC
AGTCGGCTCACGGGCGACAAGGAGGAGAAAGAGGACGAGGAAGGGGCATT
GAAGAAGTCAATGACACGCCGCCGTATGCCCTTTCTCTTCGTCGCCTTCG
TCATTGCTGCCTCCCCTCCCTCCTCCTCGCCTTGCCCCCCTTCCTCGTCT
ACGGCCTCTAATCCCCGGTCGTCGGGGTCAGAGAGGCCCTTGACAAGACA
TAAGACCAACCGCTCTTTCGCCAGCTGTAGCGTTGCCCTCGCGCTCTCTT
TGGGGCCGGTGATGGAGGAGGAGACAGAGGAAGAGGGGCCGGACGAAGCG
GAGGCGGAGGACGGAGTGGAAATGGAGGAGGAGGGGGGGGGCAAAGAGGG
AGAGAAGAAGCGGTGAAGATCCATGATCAACCCGAAAACTTCCTCGCGCA
CTTCCAGGTCGGTGGTGGACGGGTTAGAGGCGAGGGTGACCAGGCTGAGG
GAGGGAGGAAGGGATAGAGGAAAGGAGAAGGTTAAGTATGTGTATATGAC
GGAGAAAGGAGGAATCTGACGGAAGGAGGGAAGGAGCAGTAGAAATATCC
TTACCTATGCGACACCTTCCGCTCATCACCTAGGTAGCCTCCACTCAGCA
ACGCCTTGGCTACCTGCAGCCTCAGCTCCTCCCCCCTCTCCTGCTCCCCC
TCTCTCCCTCCCTCCCCTGCTTTTGCGCCCATCATCT
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Coding sequence (CDS) from alignment at scaffold_3:1463847..1464783-

>mRNA_588 ID=mRNA_588|Name=jgi.p|Nanoce1779_2|577864|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_3:1463847..1464783- (Nannochloropsis oceanica)
ATGACACGCCGCCGTATGCCCTTTCTCTTCGTCGCCTTCGTCATTGCTGC
CTCCCCTCCCTCCTCCTCGCCTTGCCCCCCTTCCTCGTCTACGGCCTCTA
ATCCCCGGTCGTCGGGGTCAGAGAGGCCCTTGACAAGACATAAGACCAAC
CGCTCTTTCGCCAGCTGTAGCGTTGCCCTCGCGCTCTCTTTGGGGCCGGT
GATGGAGGAGGAGACAGAGGAAGAGGGGCCGGACGAAGCGGAGGCGGAGG
ACGGAGTGGAAATGGAGGAGGAGGGGGGGGGCAAAGAGGGAGAGAAGAAG
CGGTGA
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Synonyms
Publications