jgi.p|Nanoce1779_2|590650, mRNA_5877 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590650
Unique Name	mRNA_5877
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1073
Alignment location	scaffold_11:809688..811395 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590736
Track	FilteredModels2
ProteinId	590650

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:809688..811395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590650	gene_5877	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590650	mRNA_5877-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5877	CDS_5877	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:809688..811395+
coding sequence from alignment at scaffold_11:809688..811395+

mRNA sequence

>mRNA_5877 ID=mRNA_5877|Name=jgi.p|Nanoce1779_2|590650|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp
TCAGCAGACAGACTGAGCTCCAGGTGGGTCACAATATCCATCGAAATCCC
AGGAAGATACCCTCTTTCCCCTCCTTTACAAATAATTGTCACGTCTGATC
CCACCGTCGCATCACTTCTCCCCACTTCCCTATCCGTCCACGAGCTAGCT
CGGCGAGGCGTCCAACAAAGCCATGCTCCGTCAATTTAAAGGCCGCGTCC
TGCCCCCCGACCATCCTACCGTCCGCCTCTTGCGGAAGGTGGGGCGGAAA
TTGGCAAGGGCAGGAGGTAGAGATGCCGAGAAGCTGCCGTGGGAGTTCCA
TGTGGTTGACAGGGATGAGATCATGAATGCGGCGGCCATGCCTGGAGGGA
AGGTGGTTATCTTCACCGGTTTAAAGCAATGCGTCAACACCGAGGAAGAG
CTCGCGGCAGTGATAGGCCACGAGATCTCCCACGTCCTCCTCCGGCACTC
CGCGGAACAGATGGCGTCAATGGCCATGGTGAATTCCGTGTTGTTTTTTT
TGGCGTTACTCGGACTGCCCGTCAATGAGCTGACATTAATCCTAGGGGAC
CTTGTCGTACACAAGCCCAACAGCCGACTTCACGAAAAAGAGGCTGACAG
AGTAGGCGTGTTACTCTGTGCTAGAGCAGGGTATGATCCTTCTGCAGCCG
TGAGAGTCTTTGAAAGAATGGCAAAAGTAGAGGAGAAGAGGAGTGGAGGG
GTCATGATGCCAGGCTTTCTTAGCACGCATCCGGCGTTCCCCGAGCGGAT
TAGCCTGTTGAAAGAAGAAGCGGCGAAAGTCCGTCCAATTTACGAGGAGA
GTAAGGCGCAGGCCCTCTTCGCACAGGCCGTCGGAGCGAGTGGAGGAGGT
GGATGAGGAGTAGGACGGGGAGAAGGCGGGCGGATGAAGGGCAGGGGGGG
GGAATGGTTCGTTACCTGAGTGAATGCGAGGGAGGGGTAAAACATCCAGA
AATGAATGAGAATCGGTGGGAAGAGAGGCGGGGGGGAAGGAAACAATAGA
AGAGATAGCTGGAGGAAATAAAACGAAGGAAAGGGAACATGCGACATGGC
CGTTGGGCACAAAGCAATCAACC

protein sequence of jgi.p|Nanoce1779_2|590650

>mRNA_5877-protein ID=mRNA_5877-protein|Name=jgi.p|Nanoce1779_2|590650|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MLRQFKGRVLPPDHPTVRLLRKVGRKLARAGGRDAEKLPWEFHVVDRDEI
MNAAAMPGGKVVIFTGLKQCVNTEEELAAVIGHEISHVLLRHSAEQMASM
AMVNSVLFFLALLGLPVNELTLILGDLVVHKPNSRLHEKEADRVGVLLCA
RAGYDPSAAVRVFERMAKVEEKRSGGVMMPGFLSTHPAFPERISLLKEEA
AKVRPIYEESKAQALFAQAVGASGGGG*

mRNA from alignment at scaffold_11:809688..811395+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5877 ID=mRNA_5877|Name=jgi.p|Nanoce1779_2|590650|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at scaffold_11:809688..811395+ (Nannochloropsis oceanica)
TCAGCAGACAGACTGAGCTCCAGGTGGGTCACAATATCCATCGAAATCCC
AGGAAGATACCCTCTTTCCCCTCCTTTACAAATAATTGTCACGTCTGATC
CCACCGTCGCATCACTTCTCCCCACTTCCCTATCCGTCCACGAGCTAGCT
CGGCGAGGCGTCCAACAAAGCCATGCTCCGTCAATTTAAAGGCCGCGTCC
TGCCCCCCGACCATCCTACCGTCCGCCTCTTGCGGAAGGTGGGGCGGAAA
TTGGCAAGGGCAGGAGGTAGAGATGCCGAGAAGCTGCCGTGGGAGTTCCA
TGTGGTTGACAGGGGTAAGGGAGGGAGAGAATGAGGGAGGCAGGGAGGGA
AAGAGGGCGGGAATCAAGGCCATTTATCAAGACATTAGATTCTCTCTTAT
TCTTCTGACACAGATGAGATCATGAATGCGGCGGCCATGCCTGGAGGGAA
GGTGGTTATCTTCACCGGTTTAAAGGTACGGGTATGGGCGAGAGAGGGAG
GGGAGAATGGACATGAACTTCACTTGGTGGGAAAGTAAGACTTGCTTGAA
TCAGGCGACTGATCAGACGAAACGCCACTTTTCAATCTCATTCCTCCCTC
TCACCCTCCCTCCTTCCCTCAGCAATGCGTCAACACCGAGGAAGAGCTCG
CGGCAGTGATAGGCCACGAGATCTCCCACGTCCTCCTCCGGCACTCCGCG
GAACAGATGGCGTCAATGGCCATGGTGAATTCCGTGTTGTTTTTTTTGGC
GTTACTCGGACTGCCCGTCAATGAGCTGACATTAATCCTAGGTACGTTGA
TGTGCGCTTTCCTGCCGATGACGTCCCGAGGATGGTGTTCTGACCTCCTG
ACCTCCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTACCTCTCCCTCCCT
ACCTCTCCCTCCCTACCTACCTACCTCCTCAGGGGACCTTGTCGTACACA
AGCCCAACAGCCGACTTCACGAAAAAGAGGCTGACAGAGTAGGCGTGTTA
CTCTGTGCTAGAGCAGGGTATGATCCTTCTGCAGCCGTGAGAGTCTTTGA
AAGAATGGCAAAAGTAGAGGAGAAGAGGAGTGGAGGGGTCATGATGCCAG
GCTTTCTTAGCACGGTAAGTAGGGAGGGAGGGAGGGATGGATGGACAGAC
GAAAAATAAGATGAGAAAAAGCGGAGATACCGAAGTACATACACGCCAGT
AATGTGTTGGATCTCGGTACGATGTTTATTCTAATTGTGCATCACCCTAA
TCATGACCGTTCTGCACACAGCACTCGGTGTCACACGGTGTTTTCCAGGC
GGGTTATAGTTGTAATTACTTCTAACCGTGCATCACCTTAATCATGATCA
TACTTCACACAGCATCCGGCGTTCCCCGAGCGGATTAGCCTGTTGAAAGA
AGAAGCGGCGAAAGTCCGTCCAATTTACGAGGAGAGTAAGGCGCAGGCCC
TCTTCGCACAGGCCGTCGGAGCGAGTGGAGGAGGTGGATGAGGAGTAGGA
CGGGGAGAAGGCGGGCGGATGAAGGGCAGGGGGGGGGAATGGTTCGTTAC
CTGAGTGAATGCGAGGGAGGGGTAAAACATCCAGAAATGAATGAGAATCG
GTGGGAAGAGAGGCGGGGGGGAAGGAAACAATAGAAGAGATAGCTGGAGG
AAATAAAACGAAGGAAAGGGAACATGCGACATGGCCGTTGGGCACAAAGC
AATCAACC

Coding sequence (CDS) from alignment at scaffold_11:809688..811395+

>mRNA_5877 ID=mRNA_5877|Name=jgi.p|Nanoce1779_2|590650|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_11:809688..811395+ (Nannochloropsis oceanica)
ATGCTCCGTCAATTTAAAGGCCGCGTCCTGCCCCCCGACCATCCTACCGT
CCGCCTCTTGCGGAAGGTGGGGCGGAAATTGGCAAGGGCAGGAGGTAGAG
ATGCCGAGAAGCTGCCGTGGGAGTTCCATGTGGTTGACAGGGATGAGATC
ATGAATGCGGCGGCCATGCCTGGAGGGAAGGTGGTTATCTTCACCGGTTT
AAAGCAATGCGTCAACACCGAGGAAGAGCTCGCGGCAGTGATAGGCCACG
AGATCTCCCACGTCCTCCTCCGGCACTCCGCGGAACAGATGGCGTCAATG
GCCATGGTGAATTCCGTGTTGTTTTTTTTGGCGTTACTCGGACTGCCCGT
CAATGAGCTGACATTAATCCTAGGGGACCTTGTCGTACACAAGCCCAACA
GCCGACTTCACGAAAAAGAGGCTGACAGAGTAGGCGTGTTACTCTGTGCT
AGAGCAGGGTATGATCCTTCTGCAGCCGTGAGAGTCTTTGAAAGAATGGC
AAAAGTAGAGGAGAAGAGGAGTGGAGGGGTCATGATGCCAGGCTTTCTTA
GCACGCATCCGGCGTTCCCCGAGCGGATTAGCCTGTTGAAAGAAGAAGCG
GCGAAAGTCCGTCCAATTTACGAGGAGAGTAAGGCGCAGGCCCTCTTCGC
ACAGGCCGTCGGAGCGAGTGGAGGAGGTGGATGAATGCTCCGTCAATTTA
AAGGCCGCGTCCTGCCCCCCGACCATCCTACCGTCCGCCTCTTGCGGAAG
GTGGGGCGGAAATTGGCAAGGGCAGGAGGTAGAGATGCCGAGAAGCTGCC
GTGGGAGTTCCATGTGGTTGACAGGGATGAGATCATGAATGCGGCGGCCA
TGCCTGGAGGGAAGGTGGTTATCTTCACCGGTTTAAAGCAATGCGTCAAC
ACCGAGGAAGAGCTCGCGGCAGTGATAGGCCACGAGATCTCCCACGTCCT
CCTCCGGCACTCCGCGGAACAGATGGCGTCAATGGCCATGGTGAATTCCG
TGTTGTTTTTTTTGGCGTTACTCGGACTGCCCGTCAATGAGCTGACATTA
ATCCTAGGGGACCTTGTCGTACACAAGCCCAACAGCCGACTTCACGAAAA
AGAGGCTGACAGAGTAGGCGTGTTACTCTGTGCTAGAGCAGGGTATGATC
CTTCTGCAGCCGTGAGAGTCTTTGAAAGAATGGCAAAAGTAGAGGAGAAG
AGGAGTGGAGGGGTCATGATGCCAGGCTTTCTTAGCACGCATCCGGCGTT
CCCCGAGCGGATTAGCCTGTTGAAAGAAGAAGCGGCGAAAGTCCGTCCAA
TTTACGAGGAGAGTAAGGCGCAGGCCCTCTTCGCACAGGCCGTCGGAGCG
AGTGGAGGAGGTGGATGAATGCTCCGTCAATTTAAAGGCCGCGTCCTGCC
CCCCGACCATCCTACCGTCCGCCTCTTGCGGAAGGTGGGGCGGAAATTGG
CAAGGGCAGGAGGTAGAGATGCCGAGAAGCTGCCGTGGGAGTTCCATGTG
GTTGACAGGGATGAGATCATGAATGCGGCGGCCATGCCTGGAGGGAAGGT
GGTTATCTTCACCGGTTTAAAGCAATGCGTCAACACCGAGGAAGAGCTCG
CGGCAGTGATAGGCCACGAGATCTCCCACGTCCTCCTCCGGCACTCCGCG
GAACAGATGGCGTCAATGGCCATGGTGAATTCCGTGTTGTTTTTTTTGGC
GTTACTCGGACTGCCCGTCAATGAGCTGACATTAATCCTAGGGGACCTTG
TCGTACACAAGCCCAACAGCCGACTTCACGAAAAAGAGGCTGACAGAGTA
GGCGTGTTACTCTGTGCTAGAGCAGGGTATGATCCTTCTGCAGCCGTGAG
AGTCTTTGAAAGAATGGCAAAAGTAGAGGAGAAGAGGAGTGGAGGGGTCA
TGATGCCAGGCTTTCTTAGCACGCATCCGGCGTTCCCCGAGCGGATTAGC
CTGTTGAAAGAAGAAGCGGCGAAAGTCCGTCCAATTTACGAGGAGAGTAA
GGCGCAGGCCCTCTTCGCACAGGCCGTCGGAGCGAGTGGAGGAGGTGGAT
GAATGCTCCGTCAATTTAAAGGCCGCGTCCTGCCCCCCGACCATCCTACC
GTCCGCCTCTTGCGGAAGGTGGGGCGGAAATTGGCAAGGGCAGGAGGTAG
AGATGCCGAGAAGCTGCCGTGGGAGTTCCATGTGGTTGACAGGGATGAGA
TCATGAATGCGGCGGCCATGCCTGGAGGGAAGGTGGTTATCTTCACCGGT
TTAAAGCAATGCGTCAACACCGAGGAAGAGCTCGCGGCAGTGATAGGCCA
CGAGATCTCCCACGTCCTCCTCCGGCACTCCGCGGAACAGATGGCGTCAA
TGGCCATGGTGAATTCCGTGTTGTTTTTTTTGGCGTTACTCGGACTGCCC
GTCAATGAGCTGACATTAATCCTAGGGGACCTTGTCGTACACAAGCCCAA
CAGCCGACTTCACGAAAAAGAGGCTGACAGAGTAGGCGTGTTACTCTGTG
CTAGAGCAGGGTATGATCCTTCTGCAGCCGTGAGAGTCTTTGAAAGAATG
GCAAAAGTAGAGGAGAAGAGGAGTGGAGGGGTCATGATGCCAGGCTTTCT
TAGCACGCATCCGGCGTTCCCCGAGCGGATTAGCCTGTTGAAAGAAGAAG
CGGCGAAAGTCCGTCCAATTTACGAGGAGAGTAAGGCGCAGGCCCTCTTC
GCACAGGCCGTCGGAGCGAGTGGAGGAGGTGGATGAATGCTCCGTCAATT
TAAAGGCCGCGTCCTGCCCCCCGACCATCCTACCGTCCGCCTCTTGCGGA
AGGTGGGGCGGAAATTGGCAAGGGCAGGAGGTAGAGATGCCGAGAAGCTG
CCGTGGGAGTTCCATGTGGTTGACAGGGATGAGATCATGAATGCGGCGGC
CATGCCTGGAGGGAAGGTGGTTATCTTCACCGGTTTAAAGCAATGCGTCA
ACACCGAGGAAGAGCTCGCGGCAGTGATAGGCCACGAGATCTCCCACGTC
CTCCTCCGGCACTCCGCGGAACAGATGGCGTCAATGGCCATGGTGAATTC
CGTGTTGTTTTTTTTGGCGTTACTCGGACTGCCCGTCAATGAGCTGACAT
TAATCCTAGGGGACCTTGTCGTACACAAGCCCAACAGCCGACTTCACGAA
AAAGAGGCTGACAGAGTAGGCGTGTTACTCTGTGCTAGAGCAGGGTATGA
TCCTTCTGCAGCCGTGAGAGTCTTTGAAAGAATGGCAAAAGTAGAGGAGA
AGAGGAGTGGAGGGGTCATGATGCCAGGCTTTCTTAGCACGCATCCGGCG
TTCCCCGAGCGGATTAGCCTGTTGAAAGAAGAAGCGGCGAAAGTCCGTCC
AATTTACGAGGAGAGTAAGGCGCAGGCCCTCTTCGCACAGGCCGTCGGAG
CGAGTGGAGGAGGTGGATGA

Synonyms

Publications