jgi.p|Nanoce1779_2|639474, mRNA_5874 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639474
Unique NamemRNA_5874
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_11:804562..806046 -

Link to JBrowse

Properties
Property NameValue
TranscriptId639560
TrackFilteredModels2
ProteinId639474
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:804562..806046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639474gene_5874Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639474mRNA_5874-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5874CDS_5874Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5874 ID=mRNA_5874|Name=jgi.p|Nanoce1779_2|639474|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
ATGGCCGGTACGACTCAGCCCCAGATTGGCGGTGGTAGTGGTGGTAATGG
CGGCAAGGTTGATGACGGCGATCGCAAGCGAAGCTTTAAGGTCCTTACCT
ATAACCTTTGGATCGCACCGCTAGTGCGCTGGCATCCCAGCGAGAATCTG
GAGGCCATATGCGACTTTATCAGAAGCACCGACCCGGACTTGGTGTGCCT
ACAAGAGGTGTTTGACTGGCGCCTCGGCCCTCTGGGTTTTTTGTGCGAAA
AAATATTTGGCGGCGGCACTGGCTGGGGGCCCATCTCCTGGTTATTTTAT
TTCGAAGGCCTCCTCCTCCCCTTCTTCCAAACCAATCACCAAGCCCGCAT
CATCTCCACCCTCCTTCCTTCCCTCCCTTATTCCCTTCCGTCGGCTCCCA
TCCCATTTGCCCGGGGCCACAACCAAGGCCTGCTGGTGTTGTCGAAGCAC
GTCCTGCACCGGCCCCTCGCCCGATACCTCCCGGGAGTGGTGGTCCACAC
CATGGGCACCCAAGCCTTCACCCTCTACCCCTCCCAAGGGGAGGGAAGGA
GGAAGGACGCGAAGGAGGGCATTCGTTTCGTGAACCTTCACTTGGTGCCC
AATTTTGAGACGCACCCCTGGAAAGGTCGTTTGTTGGGGTGGCTTGGCGA
GAAAGACGTGCCTCGGCTACAGAGGCAGCAGCTGGCTGCCATCGGGCAGG
AAATGAGGCGGGAGGGAGGAGAGGAGGGCAGGTGGTGTGCAGTGGGCGAT
TTTAATGTGCATGGTCCCGAGGTGTTGGGGGTGGGGAGTCGAGTGACAGA
GGTGACCTGCCCGAAGGAGCAGCACGTGCTAGACCACCTGGTGACTGCCC
TGCCCTACACCTACACCGTCTTTCCCAACGTCGTCCTTAGTGACCATTAT
CCCGTCCTGGCCACGCTCGAGTTGTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|639474

>mRNA_5874-protein ID=mRNA_5874-protein|Name=jgi.p|Nanoce1779_2|639474|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MAGTTQPQIGGGSGGNGGKVDDGDRKRSFKVLTYNLWIAPLVRWHPSENL
EAICDFIRSTDPDLVCLQEVFDWRLGPLGFLCEKIFGGGTGWGPISWLFY
FEGLLLPFFQTNHQARIISTLLPSLPYSLPSAPIPFARGHNQGLLVLSKH
VLHRPLARYLPGVVVHTMGTQAFTLYPSQGEGRRKDAKEGIRFVNLHLVP
NFETHPWKGRLLGWLGEKDVPRLQRQQLAAIGQEMRREGGEEGRWCAVGD
FNVHGPEVLGVGSRVTEVTCPKEQHVLDHLVTALPYTYTVFPNVVLSDHY
PVLATLEL*
back to top

mRNA from alignment at scaffold_11:804562..806046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5874 ID=mRNA_5874|Name=jgi.p|Nanoce1779_2|639474|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp|location=Sequence derived from alignment at scaffold_11:804562..806046- (Nannochloropsis oceanica)
ATGGCCGGTACGACTCAGCCCCAGATTGGCGGTGGTAGTGGTGGTAATGG
CGGCAAGGTTGATGACGGCGATCGCAAGCGAAGCTTTAAGGTTCGTGGGT
GGATAGTAGAGTCGCATGCCTCCCTTTTTTCTCTATATTAATTATTCCGC
ATCGAGTCGTTGCTGTAATCCTTCATGGCTCGCGTCTGTCTTTCCTTCTC
TCATCTTTCTAATTCCCCTTGCCTCTCCGAATCCGTAACCCATCCTCCCC
CGCGCTCGTAGGTCCTTACCTATAACCTTTGGATCGCACCGCTAGTGCGC
TGGCATCCCAGCGAGAATCTGGAGGCCATATGCGACTTTATCAGAAGCAC
CGACCCGGACTTGGTGTGCCTACAAGAGGTATGTGCTAGCGGGGTAAAAA
TGCGGAGGGAGGATGAATGGGAATTCACTCTGTTTGCAGGCTGATGGCAT
TTACGGGGGAGGCTGGGGAGCGACGGACTGTGCTTGTCCGTGAATTGTAG
GCAAAGAAACGCCAATTAAATCGACGTATACGCTTCACAGACTCACCCCA
CACTCCTACCCGCCTCCACGCCTCACCCTCCTTCCCTTCCCCCTCCCGTT
TACAAGGTGTTTGACTGGCGCCTCGGCCCTCTGGGTTTTTTGTGCGAAAA
AATATTTGGCGGCGGCACTGGCTGGGGGCCCATCTCCTGGTTATTTTATT
TCGAAGGCCTCCTCCTCCCCTTCTTCCAAACCAATCACCAAGCCCGCATC
ATCTCCACCCTCCTTCCTTCCCTCCCTTATTCCCTTCCGTCGGCTCCCAT
CCCATTTGCCCGGGGCCACAACCAAGGCCTGCTGGTGTTGTCGAAGCACG
TCCTGCACCGGCCCCTCGCCCGATACCTCCCGGGAGTGGTGGTCCACACC
ATGGGCACCCAAGCCTTCACCCTCTACCCCTCCCAAGGGGAGGGAAGGAG
GAAGGACGCGAAGGAGGGCATTCGTTTCGTGAACCTTCACTTGGTGCCCA
ATTTTGAGACGCACCCCTGGAAAGGTCGTTTGTTGGGGTGGCTTGGCGAG
AAAGACGTGCCTCGGCTACAGAGGCAGCAGCTGGCTGCCATCGGGCAGGA
AATGAGGCGGGAGGGAGGAGAGGAGGGCAGGTGGTGTGCAGTGGGCGATT
TTAATGTGCATGGTCCCGAGGTGTTGGGGGTGGGGAGTCGAGTGACAGAG
GTGGGTGGTAGGAGGAGGGAGGGAGGGAGGGAGAGAGGGAGAGGAGGGGG
AGTAGCAAGCAGAGGAATGTCCTCAATGACAAAGCCATGAAAAGCGAAAT
TAAATTTGATCGAATCACCCCTTCCTCCCTCCCTCCCTCTCTCCCTCCCT
CCCCATCAGGTGACCTGCCCGAAGGAGCAGCACGTGCTAGACCACCTGGT
GACTGCCCTGCCCTACACCTACACCGTCTTTCCCAACGTCGTCCTTAGTG
ACCATTATCCCGTCCTGGCCACGCTCGAGTTGTAG
back to top

Coding sequence (CDS) from alignment at scaffold_11:804562..806046-

>mRNA_5874 ID=mRNA_5874|Name=jgi.p|Nanoce1779_2|639474|organism=Nannochloropsis oceanica|type=CDS|length=3708bp|location=Sequence derived from alignment at scaffold_11:804562..806046- (Nannochloropsis oceanica)
GTGACCTGCCCGAAGGAGCAGCACGTGCTAGACCACCTGGTGACTGCCCT
GCCCTACACCTACACCGTCTTTCCCAACGTCGTCCTTAGTGACCATTATC
CCGTCCTGGCCACGCTCGAGTTGTAGGTGTTTGACTGGCGCCTCGGCCCT
CTGGGTTTTTTGTGCGAAAAAATATTTGGCGGCGGCACTGGCTGGGGGCC
CATCTCCTGGTTATTTTATTTCGAAGGCCTCCTCCTCCCCTTCTTCCAAA
CCAATCACCAAGCCCGCATCATCTCCACCCTCCTTCCTTCCCTCCCTTAT
TCCCTTCCGTCGGCTCCCATCCCATTTGCCCGGGGCCACAACCAAGGCCT
GCTGGTGTTGTCGAAGCACGTCCTGCACCGGCCCCTCGCCCGATACCTCC
CGGGAGTGGTGGTCCACACCATGGGCACCCAAGCCTTCACCCTCTACCCC
TCCCAAGGGGAGGGAAGGAGGAAGGACGCGAAGGAGGGCATTCGTTTCGT
GAACCTTCACTTGGTGCCCAATTTTGAGACGCACCCCTGGAAAGGTCGTT
TGTTGGGGTGGCTTGGCGAGAAAGACGTGCCTCGGCTACAGAGGCAGCAG
CTGGCTGCCATCGGGCAGGAAATGAGGCGGGAGGGAGGAGAGGAGGGCAG
GTGGTGTGCAGTGGGCGATTTTAATGTGCATGGTCCCGAGGTGTTGGGGG
TGGGGAGTCGAGTGACAGAGGTCCTTACCTATAACCTTTGGATCGCACCG
CTAGTGCGCTGGCATCCCAGCGAGAATCTGGAGGCCATATGCGACTTTAT
CAGAAGCACCGACCCGGACTTGGTGTGCCTACAAGAGATGGCCGGTACGA
CTCAGCCCCAGATTGGCGGTGGTAGTGGTGGTAATGGCGGCAAGGTTGAT
GACGGCGATCGCAAGCGAAGCTTTAAGGTGACCTGCCCGAAGGAGCAGCA
CGTGCTAGACCACCTGGTGACTGCCCTGCCCTACACCTACACCGTCTTTC
CCAACGTCGTCCTTAGTGACCATTATCCCGTCCTGGCCACGCTCGAGTTG
TAGGTGTTTGACTGGCGCCTCGGCCCTCTGGGTTTTTTGTGCGAAAAAAT
ATTTGGCGGCGGCACTGGCTGGGGGCCCATCTCCTGGTTATTTTATTTCG
AAGGCCTCCTCCTCCCCTTCTTCCAAACCAATCACCAAGCCCGCATCATC
TCCACCCTCCTTCCTTCCCTCCCTTATTCCCTTCCGTCGGCTCCCATCCC
ATTTGCCCGGGGCCACAACCAAGGCCTGCTGGTGTTGTCGAAGCACGTCC
TGCACCGGCCCCTCGCCCGATACCTCCCGGGAGTGGTGGTCCACACCATG
GGCACCCAAGCCTTCACCCTCTACCCCTCCCAAGGGGAGGGAAGGAGGAA
GGACGCGAAGGAGGGCATTCGTTTCGTGAACCTTCACTTGGTGCCCAATT
TTGAGACGCACCCCTGGAAAGGTCGTTTGTTGGGGTGGCTTGGCGAGAAA
GACGTGCCTCGGCTACAGAGGCAGCAGCTGGCTGCCATCGGGCAGGAAAT
GAGGCGGGAGGGAGGAGAGGAGGGCAGGTGGTGTGCAGTGGGCGATTTTA
ATGTGCATGGTCCCGAGGTGTTGGGGGTGGGGAGTCGAGTGACAGAGGTC
CTTACCTATAACCTTTGGATCGCACCGCTAGTGCGCTGGCATCCCAGCGA
GAATCTGGAGGCCATATGCGACTTTATCAGAAGCACCGACCCGGACTTGG
TGTGCCTACAAGAGATGGCCGGTACGACTCAGCCCCAGATTGGCGGTGGT
AGTGGTGGTAATGGCGGCAAGGTTGATGACGGCGATCGCAAGCGAAGCTT
TAAGGTGACCTGCCCGAAGGAGCAGCACGTGCTAGACCACCTGGTGACTG
CCCTGCCCTACACCTACACCGTCTTTCCCAACGTCGTCCTTAGTGACCAT
TATCCCGTCCTGGCCACGCTCGAGTTGTAGGTGTTTGACTGGCGCCTCGG
CCCTCTGGGTTTTTTGTGCGAAAAAATATTTGGCGGCGGCACTGGCTGGG
GGCCCATCTCCTGGTTATTTTATTTCGAAGGCCTCCTCCTCCCCTTCTTC
CAAACCAATCACCAAGCCCGCATCATCTCCACCCTCCTTCCTTCCCTCCC
TTATTCCCTTCCGTCGGCTCCCATCCCATTTGCCCGGGGCCACAACCAAG
GCCTGCTGGTGTTGTCGAAGCACGTCCTGCACCGGCCCCTCGCCCGATAC
CTCCCGGGAGTGGTGGTCCACACCATGGGCACCCAAGCCTTCACCCTCTA
CCCCTCCCAAGGGGAGGGAAGGAGGAAGGACGCGAAGGAGGGCATTCGTT
TCGTGAACCTTCACTTGGTGCCCAATTTTGAGACGCACCCCTGGAAAGGT
CGTTTGTTGGGGTGGCTTGGCGAGAAAGACGTGCCTCGGCTACAGAGGCA
GCAGCTGGCTGCCATCGGGCAGGAAATGAGGCGGGAGGGAGGAGAGGAGG
GCAGGTGGTGTGCAGTGGGCGATTTTAATGTGCATGGTCCCGAGGTGTTG
GGGGTGGGGAGTCGAGTGACAGAGGTCCTTACCTATAACCTTTGGATCGC
ACCGCTAGTGCGCTGGCATCCCAGCGAGAATCTGGAGGCCATATGCGACT
TTATCAGAAGCACCGACCCGGACTTGGTGTGCCTACAAGAGATGGCCGGT
ACGACTCAGCCCCAGATTGGCGGTGGTAGTGGTGGTAATGGCGGCAAGGT
TGATGACGGCGATCGCAAGCGAAGCTTTAAGGTGACCTGCCCGAAGGAGC
AGCACGTGCTAGACCACCTGGTGACTGCCCTGCCCTACACCTACACCGTC
TTTCCCAACGTCGTCCTTAGTGACCATTATCCCGTCCTGGCCACGCTCGA
GTTGTAGGTGTTTGACTGGCGCCTCGGCCCTCTGGGTTTTTTGTGCGAAA
AAATATTTGGCGGCGGCACTGGCTGGGGGCCCATCTCCTGGTTATTTTAT
TTCGAAGGCCTCCTCCTCCCCTTCTTCCAAACCAATCACCAAGCCCGCAT
CATCTCCACCCTCCTTCCTTCCCTCCCTTATTCCCTTCCGTCGGCTCCCA
TCCCATTTGCCCGGGGCCACAACCAAGGCCTGCTGGTGTTGTCGAAGCAC
GTCCTGCACCGGCCCCTCGCCCGATACCTCCCGGGAGTGGTGGTCCACAC
CATGGGCACCCAAGCCTTCACCCTCTACCCCTCCCAAGGGGAGGGAAGGA
GGAAGGACGCGAAGGAGGGCATTCGTTTCGTGAACCTTCACTTGGTGCCC
AATTTTGAGACGCACCCCTGGAAAGGTCGTTTGTTGGGGTGGCTTGGCGA
GAAAGACGTGCCTCGGCTACAGAGGCAGCAGCTGGCTGCCATCGGGCAGG
AAATGAGGCGGGAGGGAGGAGAGGAGGGCAGGTGGTGTGCAGTGGGCGAT
TTTAATGTGCATGGTCCCGAGGTGTTGGGGGTGGGGAGTCGAGTGACAGA
GGTCCTTACCTATAACCTTTGGATCGCACCGCTAGTGCGCTGGCATCCCA
GCGAGAATCTGGAGGCCATATGCGACTTTATCAGAAGCACCGACCCGGAC
TTGGTGTGCCTACAAGAGATGGCCGGTACGACTCAGCCCCAGATTGGCGG
TGGTAGTGGTGGTAATGGCGGCAAGGTTGATGACGGCGATCGCAAGCGAA
GCTTTAAG
back to top
Synonyms
Publications