jgi.p|Nanoce1779_2|590642, mRNA_5873 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590642
Unique NamemRNA_5873
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length598
Alignment locationscaffold_11:803253..804028 +

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Properties
Property NameValue
TranscriptId590728
TrackFilteredModels2
ProteinId590642
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:803253..804028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590642gene_5873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590642mRNA_5873-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5873CDS_5873Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5873 ID=mRNA_5873|Name=jgi.p|Nanoce1779_2|590642|organism=Nannochloropsis oceanica|type=mRNA|length=598bp
CAGTCTACTGCACAGCTCAAACCCACTTACCAACCCAAAGATACAATGGT
TCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGCCTCCC
CCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACAAGGCC
GTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAACCCGGT
TCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAACCAAG
TATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGGAATTC
GCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCTTATGT
CTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACCTGAAT
ATGCGGAAAAGATTATGCCTAACGAAAGCGTTAACCTGGGGTATCTTATC
TCGGGGCCCTCGGCGAGTGCAGTGAAGATGGGAGACTTCAAGGTTACTGC
CGCCGAATGGTGCGAAGAGGACAAATAGGCAAGGAATGAGGGAGGGAGGG
AGGGAGGGAGGGAGGCCAAAGGGACTGAAAGGCCCGTATAGTGAATGA
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protein sequence of jgi.p|Nanoce1779_2|590642

>mRNA_5873-protein ID=mRNA_5873-protein|Name=jgi.p|Nanoce1779_2|590642|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MVRNCAFAAFISIVALASPALAHETTNLRMESNKAVAASPMDALSVTMPN
PVHTWKDEKTGTFYAQNQVFLSNNDPTRAVCDVEFAVPVDEAAETRVESS
YVSNVKTGKSGLTGDLPEYAEKIMPNESVNLGYLISGPSASAVKMGDFKV
TAAEWCEEDK*
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mRNA from alignment at scaffold_11:803253..804028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5873 ID=mRNA_5873|Name=jgi.p|Nanoce1779_2|590642|organism=Nannochloropsis oceanica|type=mRNA|length=776bp|location=Sequence derived from alignment at scaffold_11:803253..804028+ (Nannochloropsis oceanica)
CAGTCTACTGCACAGCTCAAACCCACTTACCAACCCAAAGATACAATGGT
TCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGCCTCCC
CCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACAAGGCC
GTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAACCCGGT
TCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAACCAAG
TATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGGAATTC
GCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCTTATGT
CTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACCTGAAT
ATGCGGAAAAGTAAGTATGACTGAATACACTACGTAGAGAAGGGATAGGA
GGGAGGAAAGGGGACGGGAGTAATAGAATATTGATCGTGATGGAGCAAGT
TAATTCGTACTCTTATGTATGCCCTGTCCTCCCTCCTTCCCTCCCTCCCT
CCCTTTCTTTTTCTTCATCTCCATCCACCACCAACCAGGATTATGCCTAA
CGAAAGCGTTAACCTGGGGTATCTTATCTCGGGGCCCTCGGCGAGTGCAG
TGAAGATGGGAGACTTCAAGGTTACTGCCGCCGAATGGTGCGAAGAGGAC
AAATAGGCAAGGAATGAGGGAGGGAGGGAGGGAGGGAGGGAGGCCAAAGG
GACTGAAAGGCCCGTATAGTGAATGA
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Coding sequence (CDS) from alignment at scaffold_11:803253..804028+

>mRNA_5873 ID=mRNA_5873|Name=jgi.p|Nanoce1779_2|590642|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_11:803253..804028+ (Nannochloropsis oceanica)
ATGGTTCGTAACTGTGCCTTTGCTGCCTTCATCTCCATCGTAGCCCTAGC
CTCCCCCGCTCTGGCGCACGAAACAACCAACCTTCGTATGGAAAGCAACA
AGGCCGTCGCCGCTTCTCCCATGGACGCGCTGTCGGTCACCATGCCCAAC
CCGGTTCACACGTGGAAGGATGAGAAAACTGGCACATTTTACGCACAAAA
CCAAGTATTCCTTTCCAACAACGACCCCACCCGCGCGGTGTGTGATGTGG
AATTCGCCGTGCCTGTCGATGAGGCGGCTGAGACGAGGGTAGAGAGCTCT
TATGTCTCGAATGTCAAGACGGGCAAAAGTGGGTTGACTGGAGACTTACC
TGAATATGCGGAAAAGATTATGCCTAACGAAAGCGTTAACCTGGGGTATC
TTATCTCGGGGCCCTCGGCGAGTGCAGTGAAGATGGGAGACTTCAAGGTT
ACTGCCGCCGAATGGTGCGAAGAGGACAAATAGATGGTTCGTAACTGTGC
CTTTGCTGCCTTCATCTCCATCGTAGCCCTAGCCTCCCCCGCTCTGGCGC
ACGAAACAACCAACCTTCGTATGGAAAGCAACAAGGCCGTCGCCGCTTCT
CCCATGGACGCGCTGTCGGTCACCATGCCCAACCCGGTTCACACGTGGAA
GGATGAGAAAACTGGCACATTTTACGCACAAAACCAAGTATTCCTTTCCA
ACAACGACCCCACCCGCGCGGTGTGTGATGTGGAATTCGCCGTGCCTGTC
GATGAGGCGGCTGAGACGAGGGTAGAGAGCTCTTATGTCTCGAATGTCAA
GACGGGCAAAAGTGGGTTGACTGGAGACTTACCTGAATATGCGGAAAAGA
TTATGCCTAACGAAAGCGTTAACCTGGGGTATCTTATCTCGGGGCCCTCG
GCGAGTGCAGTGAAGATGGGAGACTTCAAGGTTACTGCCGCCGAATGGTG
CGAAGAGGACAAATAG
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Synonyms
Publications