jgi.p|Nanoce1779_2|577863, mRNA_587 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577863
Unique NamemRNA_587
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1518
Alignment locationscaffold_3:1462341..1463858 -

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Properties
Property NameValue
TranscriptId577949
TrackFilteredModels2
ProteinId577863
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1462341..1463858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577863gene_587Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577863mRNA_587-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_587CDS_587Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_587 ID=mRNA_587|Name=jgi.p|Nanoce1779_2|577863|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
CGCCCATCATCTCTCTCACCCCCTTCCCTAGCAACTTCACCCCCGCCAGC
TGCACCCCCGGGCGCCAAGCCCCTCTCAGGTAGGCGCGAGAGGTGTCCGT
GAGACAGGAGGGGAGGAAGGGATGACACTCCTGCAATAGAATCAAGTCTT
GGGGATGTCTCGCATCTGCCAGTACCTGCAGTAGCCCCGCCATGGCCTTG
GGACTCACCCTCTTGGCCTTGCTCAGTGCCTTGACCACCTCCCTCCAGAG
CCGCCGGCTCTCCCCCCCCTGGGCCCCGTCCAGGAGTTCGCTGAAGCCTC
CCTTGCTCGGCGAGACCAGCGCCACGAGGGATCGAGGTCCTTGCTCCTCC
TTGCTAGGGTCGCCCTCCCACCTCCTGCTAAATTGGTCGAGCAATAGCGT
CCGAATTTGCTTCACGAGGCTCTTGGCGTGCTCGTCCACGTCAGGACGGG
TGGGGAGGGGTCGATCTGTTTCGTGGTAGCCTCCTTCCTCTCCCTCCTCC
CCCTCCTGCCCCTCCTGCCTCCCACCCTCCCTTTGGGAGGAGGGGAAAGG
GGACAGCGGGTAAAGGAAGCGAAGGAGGAGGCCTCCGACTTCTGCAGCAA
CTTCATAGACGAGGCTGCTGTGGGATTGCATCGCCTGGAGGAGGTGGCGG
AGGAGGGACTGGGCGAGGGCGGGATGATGAGAGGAGACGACGTTGATTTT
TCCAGCAGTTAGGAGGAGGGCGAGAATGTTCACACCGGTAGTGCGACGCC
TGGTGAGGCGGATCCCTAGGCTGTCTTTGCTATGATGCTTCCCGGTAGCG
GCTGTGGAAGGAGCGCTGAGAAGGGAGAGGAGGGCGGCGAAAGGCCCGAC
GCTGCTGGCACTGCTGCTGTTGCTGCTGCTGGGGACCTCCGGGTTGGTGG
TGGAGGAGGGGGAGGACGAGGAAAGTGGGAGGGAAGAGGGTGGGTCAGAG
AATAGTGCGGCTTCGAAAGTTTGTCGAAGGGCCTCATTTTTGCGGAGGAG
GAGGGAAAAAGCGGAGGAGGGGCCGGGAAGGAGGGAGGGAGGGGCGATCC
AGAGGGACAGGAGGGAGGAGAGAAAGTAGAGATTGCGGCGGGTGACGGGC
ATGAGAGTGTCGTCGTGGGCGTAGGTGAGGAAGTGACAGAGGAAGGAAGT
GCTGTCGATCAGTTCGTTTGAGGAGGAAAGGAGCGAGGGAGGGGAGGGGC
GGTAGTCTTGCCAGGCGGTCAGGAAGGTGTCGGCAACGTCACACAGGAAA
TAGTGACATGCGCTAGAGGAGGGCTGGCCGGAGGATGGGGGGGAGGGAGG
GGTGAGGAGGAGGGAGGCCACAGTGCTCAGGACCTTGCCTCCAAGATCCT
GGTTGATCCATCGCGCGAGAATAGACGCGGCGGGCTCGTTCAAGCACGCC
TGAAGGACGAAAAGCCGAGCATTACGGTGAAGGCCTGTGCCTTCCTCGAG
CGCCTGTTCCAAGGCCGCTACCCATGAGGGCTTTGACTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCT
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protein sequence of jgi.p|Nanoce1779_2|577863

>mRNA_587-protein ID=mRNA_587-protein|Name=jgi.p|Nanoce1779_2|577863|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MALGLTLLALLSALTTSLQSRRLSPPWAPSRSSLKPPLLGETSATRDRGP
CSSLLGSPSHLLLNWSSNSVRICFTRLLACSSTSGRVGRGRSVSW*
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mRNA from alignment at scaffold_3:1462341..1463858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_587 ID=mRNA_587|Name=jgi.p|Nanoce1779_2|577863|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp|location=Sequence derived from alignment at scaffold_3:1462341..1463858- (Nannochloropsis oceanica)
CGCCCATCATCTCTCTCACCCCCTTCCCTAGCAACTTCACCCCCGCCAGC
TGCACCCCCGGGCGCCAAGCCCCTCTCAGGTAGGCGCGAGAGGTGTCCGT
GAGACAGGAGGGGAGGAAGGGATGACACTCCTGCAATAGAATCAAGTCTT
GGGGATGTCTCGCATCTGCCAGTACCTGCAGTAGCCCCGCCATGGCCTTG
GGACTCACCCTCTTGGCCTTGCTCAGTGCCTTGACCACCTCCCTCCAGAG
CCGCCGGCTCTCCCCCCCCTGGGCCCCGTCCAGGAGTTCGCTGAAGCCTC
CCTTGCTCGGCGAGACCAGCGCCACGAGGGATCGAGGTCCTTGCTCCTCC
TTGCTAGGGTCGCCCTCCCACCTCCTGCTAAATTGGTCGAGCAATAGCGT
CCGAATTTGCTTCACGAGGCTCTTGGCGTGCTCGTCCACGTCAGGACGGG
TGGGGAGGGGTCGATCTGTTTCGTGGTAGCCTCCTTCCTCTCCCTCCTCC
CCCTCCTGCCCCTCCTGCCTCCCACCCTCCCTTTGGGAGGAGGGGAAAGG
GGACAGCGGGTAAAGGAAGCGAAGGAGGAGGCCTCCGACTTCTGCAGCAA
CTTCATAGACGAGGCTGCTGTGGGATTGCATCGCCTGGAGGAGGTGGCGG
AGGAGGGACTGGGCGAGGGCGGGATGATGAGAGGAGACGACGTTGATTTT
TCCAGCAGTTAGGAGGAGGGCGAGAATGTTCACACCGGTAGTGCGACGCC
TGGTGAGGCGGATCCCTAGGCTGTCTTTGCTATGATGCTTCCCGGTAGCG
GCTGTGGAAGGAGCGCTGAGAAGGGAGAGGAGGGCGGCGAAAGGCCCGAC
GCTGCTGGCACTGCTGCTGTTGCTGCTGCTGGGGACCTCCGGGTTGGTGG
TGGAGGAGGGGGAGGACGAGGAAAGTGGGAGGGAAGAGGGTGGGTCAGAG
AATAGTGCGGCTTCGAAAGTTTGTCGAAGGGCCTCATTTTTGCGGAGGAG
GAGGGAAAAAGCGGAGGAGGGGCCGGGAAGGAGGGAGGGAGGGGCGATCC
AGAGGGACAGGAGGGAGGAGAGAAAGTAGAGATTGCGGCGGGTGACGGGC
ATGAGAGTGTCGTCGTGGGCGTAGGTGAGGAAGTGACAGAGGAAGGAAGT
GCTGTCGATCAGTTCGTTTGAGGAGGAAAGGAGCGAGGGAGGGGAGGGGC
GGTAGTCTTGCCAGGCGGTCAGGAAGGTGTCGGCAACGTCACACAGGAAA
TAGTGACATGCGCTAGAGGAGGGCTGGCCGGAGGATGGGGGGGAGGGAGG
GGTGAGGAGGAGGGAGGCCACAGTGCTCAGGACCTTGCCTCCAAGATCCT
GGTTGATCCATCGCGCGAGAATAGACGCGGCGGGCTCGTTCAAGCACGCC
TGAAGGACGAAAAGCCGAGCATTACGGTGAAGGCCTGTGCCTTCCTCGAG
CGCCTGTTCCAAGGCCGCTACCCATGAGGGCTTTGACTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at scaffold_3:1462341..1463858-

>mRNA_587 ID=mRNA_587|Name=jgi.p|Nanoce1779_2|577863|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_3:1462341..1463858- (Nannochloropsis oceanica)
ATGGCCTTGGGACTCACCCTCTTGGCCTTGCTCAGTGCCTTGACCACCTC
CCTCCAGAGCCGCCGGCTCTCCCCCCCCTGGGCCCCGTCCAGGAGTTCGC
TGAAGCCTCCCTTGCTCGGCGAGACCAGCGCCACGAGGGATCGAGGTCCT
TGCTCCTCCTTGCTAGGGTCGCCCTCCCACCTCCTGCTAAATTGGTCGAG
CAATAGCGTCCGAATTTGCTTCACGAGGCTCTTGGCGTGCTCGTCCACGT
CAGGACGGGTGGGGAGGGGTCGATCTGTTTCGTGGTAG
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Synonyms
Publications