jgi.p|Nanoce1779_2|590604, mRNA_5866 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590604
Unique Name	mRNA_5866
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2327
Alignment location	scaffold_11:773212..775565 -

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Properties


Property Name	Value
TranscriptId	590690
Track	FilteredModels2
ProteinId	590604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:773212..775565 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590604	gene_5866	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590604	mRNA_5866-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5866	CDS_5866	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:773212..775565-
coding sequence from alignment at scaffold_11:773212..775565-

mRNA sequence

>mRNA_5866 ID=mRNA_5866|Name=jgi.p|Nanoce1779_2|590604|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp
ACGCACACTTACAGCATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGC
TGCCGCGTCCACCACCAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATG
CGCGTGAGCGGGGCAAGCGCGCCAAAGACCTCGACATCTACCCCACGGCA
CCACGGCAAGACAAGGAGAAATCCTTCGTGTGGCGTTCCGTCCACATCTA
CAAGCCCTTCAGAAAGGATTCAAGGGGAAACCTTTACTGCATGGCCTGCG
ATTCGTGGCTGAAGGGAGCCGCGTCGCAGTGTGGCGACCACCTGAGGCAT
TGCCACCCGGAGGAGTGGGCTCGCGTCAAACGCCTCAAAGCTGGAGACGA
AGAGGATGACACCATGTCAGCCTTGTCTTCTGGGTCGAAGAAGGTGCAGA
CCAAGCTCCATCACCACCAATACTGGCGGGGGGATGCCCTCCAGCGCGGG
CACAACCTCCGACCCTTCAACCTCGTCAGCGACCTCGGCTTTAGGGACTT
CGTCGGGGCCATCGGCCCCCAATACAAATTGCCTACGACCCGGACAATCA
AGAAGTACGTGAATGCGATGTTTGCCAAAGGCAAGGGGCTCATCAAGGGC
TTCCTCGCCCCGCTGACCTTGGATGATGGGGCCGGTCCAGCGTGTGGTAT
GACTGCCTGCCTTCAAACGGATGCGTGGGCTGGACGCAATGGCAAGTCCT
ACAACGGCACGCTTGCCACCACGCTGGACGACGACTTCAGGGGCCGCCTC
ATCTGCCTGGACATGGTGGAGTGCCAGAAGAAGCACCACACGGCCGCGGT
GATCACTGATTTGCTGAAGGCGTCGTTGGACGACTTCAAGATTCCTGCTG
CAAACATCTTCCGCACTGTGCACGACGCTGGGTCCAACGTCAAGAAAGGT
GAGATGCATATATTTAACTATCTATTAAACGTTGCACCTAATGTATTTTC
AACTTGGCGCTCACACACACACACACACATACATACACATGACAGGCGTG
CCCGACGCTGGGCTCAAGTCCTCCTCGTGTACCACACATGCCTTGCAGCG
GACCATCGTCAACTCGCTCAACCACAGCCCTGCCATCAAGACCATGATCA
ATAAGGTAAAGGCAGCTGTGAAGGCCGTCCGTCAAAGCCACTCCCAGACA
GCTTATCTCAGGGAGGCACGAGTGGCAGCAGGCGTTTTCGACCACCAGCT
TGTCCAAGCTAACGCCACACGTTGGAGCTCTCTCGCGAATGCTTGTGATC
GCTTGCTGGAGCAGCGGCCCGCCCTCGAGTCGGCGTACGCGGCCGATGAT
AGGGCCCGCACCAGCCGCCGTAACAGGGAGGTCGTCTTCCCTGTGGACAA
GCGCATCGATCCGGACACCTTCGCCGGTGTGTGCGATCTCCTTGCCGTGC
TTGACCCCTTTCGGAAGTTCACCACGGTTCTTCAGGCGGACTTTGGCACA
GCTGGGAAGGTGGTGCCTGCCATCTTCAAGCTACAGGCGCTCGTGACTGC
TGACAAGGTGAAAGTAGTCACGCCTAGGTCTGGGCCGAACCATCCCGGGT
CGTCGGCCGAGGTGCTCGCCACGGACCTCCACCCCGCCGTTCAGGAAGTC
CGCCAGCATATGGCTCAAGACATGGCGACGCGCTTCCATTGGGACATTCT
GCGGGACACCTTTGCAATCGCCTCCCTGCTCGACCCCCGTTTCAAAAAGC
TCGCCGATTACCATGTACCCGAGCACCTCGTCAAGGATGCATGGGGGCTG
CTTCGCCTAGAACTGGACAAGGCCATTACGACGCTCAAGGATGAGGGCAT
GTACACCGACAGGGCGGAGAAGCAGGGCGCAGGGGGCGACATCGTCGTGG
ACAGCGGGGACCCTTTCGCCGCAGAGAACACGGCCTCCAGGACGTCGGCA
GTTTCTGCCGGTGACGCCCTTGGCAACGGTGCGGACGGTGTCCCTCGCTC
CGTTTTGGGCACTGCAAGGGAGCAGCTTCTTAACCTTTCCGAGGTGTACC
AGGAGTTGGCCGATTACATCCGCATGCCAGTCGAGCCTTCTAGCACCTGC
CCACTGGACTGGTGGCGGTGCAACAAGCGGTTCTTTCCCGCCCTGGCGAA
GCTTGCTCGGCAGTATCTGTGCGTGCCCGCAACCTCTGCCGGGGTGGAGC
GGTTCTTTTCCGCTGCAGGCCTGACGATCAGCAACCTTCGGACGCGCCTC
AGCAGCAAGACTGTCGAGATGATTCTATTCCTGCGGCTGAATTGGGACAA
CTCGCTGTACACGGTGAAGCTTGGGGGCGCAGATCTCGAGGAGGTCACCC
GAGCGGAAGAAGGGGGGGGAGGGGGGG

protein sequence of jgi.p|Nanoce1779_2|590604

>mRNA_5866-protein ID=mRNA_5866-protein|Name=jgi.p|Nanoce1779_2|590604|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MACDSWLKGAASQCGDHLRHCHPEEWARVKRLKAGDEEDDTMSALSSGSK
KVQTKLHHHQYWRGDALQRGHNLRPFNLVSDLGFRDFVGAIGPQYKLPTT
RTIKKYVNAMFAKGKGLIKGFLAPLTLDDGAGPACGMTACLQTDAWAGRN
GKSYNGTLATTLDDDFRGRLICLDMVECQKKHHTAAVITDLLKASLDDFK
IPAANIFRTVHDAGSNVKKGEMHIFNYLLNVAPNVFSTWRSHTHTHIHTH
DRRARRWAQVLLVYHTCLAADHRQLAQPQPCHQDHDQ*

mRNA from alignment at scaffold_11:773212..775565-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5866 ID=mRNA_5866|Name=jgi.p|Nanoce1779_2|590604|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp|location=Sequence derived from alignment at scaffold_11:773212..775565- (Nannochloropsis oceanica)
ACGCACACTTACAGCATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGC
TGCCGCGTCCACCACCAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATG
CGCGTGAGCGGGGCAAGCGCGCCAAAGACCTCGACATCTACCCCACGGCA
CCACGGCAAGACAAGGAGAAATCCTTCGTGTGGCGTTCCGTCCACATCTA
CAAGCCCTTCAGAAAGGATTCAAGGGGAAACCTTTACTGCATGGCCTGCG
ATTCGTGGCTGAAGGGAGCCGCGTCGCAGTGTGGCGACCACCTGAGGCAT
TGCCACCCGGAGGAGTGGGCTCGCGTCAAACGCCTCAAAGCTGGAGACGA
AGAGGATGACACCATGTCAGCCTTGTCTTCTGGGTCGAAGAAGGTGCAGA
CCAAGCTCCATCACCACCAATACTGGCGGGGGGATGCCCTCCAGCGCGGG
CACAAGTACCTTACAGGCTTCTAGCTCCGCAGCCTCCGACCCTTCAACCT
CGTCAGCGACCTCGGCTTTAGGGACTTCGTCGGGGCCATCGGCCCCCAAT
ACAAATTGCCTACGACCCGGACAATCAAGAAGTACGTGAATGCGATGTTT
GCCAAAGGCAAGGGGCTCATCAAGGGCTTCCTCGCCCCGCTGACCTTGGA
TGATGGGGCCGGTCCAGCGTGTGGTATGACTGCCTGCCTTCAAACGGATG
CGTGGGCTGGACGCAATGGCAAGTCCTACAACGGCACGCTTGCCACCACG
CTGGACGACGACTTCAGGGGCCGCCTCATCTGCCTGGACATGGTGGAGTG
CCAGAAGAAGCACCACACGGCCGCGGTGATCACTGATTTGCTGAAGGCGT
CGTTGGACGACTTCAAGATTCCTGCTGCAAACATCTTCCGCACTGTGCAC
GACGCTGGGTCCAACGTCAAGAAAGGTGAGATGCATATATTTAACTATCT
ATTAAACGTTGCACCTAATGTATTTTCAACTTGGCGCTCACACACACACA
CACACATACATACACATGACAGGCGTGCCCGACGCTGGGCTCAAGTCCTC
CTCGTGTACCACACATGCCTTGCAGCGGACCATCGTCAACTCGCTCAACC
ACAGCCCTGCCATCAAGACCATGATCAATAAGGTAAAGGCAGCTGTGAAG
GCCGTCCGTCAAAGCCACTCCCAGACAGCTTATCTCAGGGAGGCACGAGT
GGCAGCAGGCGTTTTCGACCACCAGCTTGTCCAAGCTAACGCCACACGTT
GGAGCTCTCTCGCGAATGCTTGTGATCGCTTGCTGGAGCAGCGGCCCGCC
CTCGAGTCGGCGTACGCGGCCGATGATAGGGCCCGCACCAGCCGCCGTAA
CAGGGAGGTCGTCTTCCCTGTGGACAAGCGCATCGATCCGGACACCTTCG
CCGGTGTGTGCGATCTCCTTGCCGTGCTTGACCCCTTTCGGAAGTTCACC
ACGGTTCTTCAGGCGGACTTTGGCACAGCTGGGAAGGTGGTGCCTGCCAT
CTTCAAGCTACAGGCGCTCGTGACTGCTGACAAGGTGAAAGTAGTCACGC
CTAGGTCTGGGCCGAACCATCCCGGGTCGTCGGCCGAGGTGCTCGCCACG
GACCTCCACCCCGCCGTTCAGGAAGTCCGCCAGCATATGGCTCAAGACAT
GGCGACGCGCTTCCATTGGGACATTCTGCGGGACACCTTTGCAATCGCCT
CCCTGCTCGACCCCCGTTTCAAAAAGCTCGCCGATTACCATGTACCCGAG
CACCTCGTCAAGGATGCATGGGGGCTGCTTCGCCTAGAACTGGACAAGGC
CATTACGACGCTCAAGGATGAGGGCATGTACACCGACAGGGCGGAGAAGC
AGGGCGCAGGGGGCGACATCGTCGTGGACAGCGGGGACCCTTTCGCCGCA
GAGAACACGGCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACGCCCTTGG
CAACGGTGCGGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCAAGGGAGC
AGCTTCTTAACCTTTCCGAGGTGTACCAGGAGTTGGCCGATTACATCCGC
ATGCCAGTCGAGCCTTCTAGCACCTGCCCACTGGACTGGTGGCGGTGCAA
CAAGCGGTTCTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTATCTGTGCG
TGCCCGCAACCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGCAGGCCTG
ACGATCAGCAACCTTCGGACGCGCCTCAGCAGCAAGACTGTCGAGATGAT
TCTATTCCTGCGGCTGAATTGGGACAACTCGCTGTACACGGTGAAGCTTG
GGGGCGCAGATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGGGGGAGGG
GGGG

Coding sequence (CDS) from alignment at scaffold_11:773212..775565-

>mRNA_5866 ID=mRNA_5866|Name=jgi.p|Nanoce1779_2|590604|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_11:773212..775565- (Nannochloropsis oceanica)
CCTCCGACCCTTCAACCTCGTCAGCGACCTCGGCTTTAGGGACTTCGTCG
GGGCCATCGGCCCCCAATACAAATTGCCTACGACCCGGACAATCAAGAAG
TACGTGAATGCGATGTTTGCCAAAGGCAAGGGGCTCATCAAGGGCTTCCT
CGCCCCGCTGACCTTGGATGATGGGGCCGGTCCAGCGTGTGGTATGACTG
CCTGCCTTCAAACGGATGCGTGGGCTGGACGCAATGGCAAGTCCTACAAC
GGCACGCTTGCCACCACGCTGGACGACGACTTCAGGGGCCGCCTCATCTG
CCTGGACATGGTGGAGTGCCAGAAGAAGCACCACACGGCCGCGGTGATCA
CTGATTTGCTGAAGGCGTCGTTGGACGACTTCAAGATTCCTGCTGCAAAC
ATCTTCCGCACTGTGCACGACGCTGGGTCCAACGTCAAGAAAGGTGAGAT
GCATATATTTAACTATCTATTAAACGTTGCACCTAATGTATTTTCAACTT
GGCGCTCACACACACACACACACATACATACACATGACAGGCGTGCCCGA
CGCTGGGCTCAAGTCCTCCTCGTGTACCACACATGCCTTGCAGCGGACCA
TCGTCAACTCGCTCAACCACAGCCCTGCCATCAAGACCATGATCAATAAA
TGGCCTGCGATTCGTGGCTGAAGGGAGCCGCGTCGCAGTGTGGCGACCAC
CTGAGGCATTGCCACCCGGAGGAGTGGGCTCGCGTCAAACGCCTCAAAGC
TGGAGACGAAGAGGATGACACCATGTCAGCCTTGTCTTCTGGGTCGAAGA
AGGTGCAGACCAAGCTCCATCACCACCAATACTGGCGGGGGGATGCCCTC
CAGCGCGGGCACAACCTCCGACCCTTCAACCTCGTCAGCGACCTCGGCTT
TAGGGACTTCGTCGGGGCCATCGGCCCCCAATACAAATTGCCTACGACCC
GGACAATCAAGAAGTACGTGAATGCGATGTTTGCCAAAGGCAAGGGGCTC
ATCAAGGGCTTCCTCGCCCCGCTGACCTTGGATGATGGGGCCGGTCCAGC
GTGTGGTATGACTGCCTGCCTTCAAACGGATGCGTGGGCTGGACGCAATG
GCAAGTCCTACAACGGCACGCTTGCCACCACGCTGGACGACGACTTCAGG
GGCCGCCTCATCTGCCTGGACATGGTGGAGTGCCAGAAGAAGCACCACAC
GGCCGCGGTGATCACTGATTTGCTGAAGGCGTCGTTGGACGACTTCAAGA
TTCCTGCTGCAAACATCTTCCGCACTGTGCACGACGCTGGGTCCAACGTC
AAGAAAGGTGAGATGCATATATTTAACTATCTATTAAACGTTGCACCTAA
TGTATTTTCAACTTGGCGCTCACACACACACACACACATACATACACATG
ACAGGCGTGCCCGACGCTGGGCTCAAGTCCTCCTCGTGTACCACACATGC
CTTGCAGCGGACCATCGTCAACTCGCTCAACCACAGCCCTGCCATCAAGA
CCATGATCAATAAATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCGTCGC
AGTGTGGCGACCACCTGAGGCATTGCCACCCGGAGGAGTGGGCTCGCGTC
AAACGCCTCAAAGCTGGAGACGAAGAGGATGACACCATGTCAGCCTTGTC
TTCTGGGTCGAAGAAGGTGCAGACCAAGCTCCATCACCACCAATACTGGC
GGGGGGATGCCCTCCAGCGCGGGCACAA

Synonyms

Publications