jgi.p|Nanoce1779_2|39305, mRNA_5865 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|39305
Unique Name	mRNA_5865
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1661
Alignment location	scaffold_11:770470..772130 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	39391
Track	FilteredModels2
ProteinId	39305

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:770470..772130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|39305	gene_5865	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|39305	mRNA_5865-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5865	CDS_5865	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:770470..772130+
coding sequence from alignment at scaffold_11:770470..772130+

mRNA sequence

>mRNA_5865 ID=mRNA_5865|Name=jgi.p|Nanoce1779_2|39305|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp
TAAATTTGTCAGATGCGGGGTTGATAAACTGTTCTACTTGAAGAGGTCTC
CTCGGAGGGATGTACAAGTGAGGTTCGTCTCGGCCAAAACCCATCGATAT
GGGACCTAGGAAAAACATGCCAACACCATCATCACGTGGAGTGCTTATGT
TTTCACTTGAAAGAATGGTTGGCATGCTTGTGATGATGTGATGGTCGGGG
TGGACACAAAAATTACTTCACATGCAGGAGCAGGGGAACATGCGAATTAA
CCGAGGAGCGAGCTCCTCCGATCCGGTCGTCGTAAAATGTTTGGGATTGC
ATCACATACACGATGCATTTACAATGTCTCACGCACCCATAGTTGGCATG
GTCTGTTTTCTTATCGACTGATCCCCTTGCACAGGCCAGCGTCAAATCAA
TCAAGCTATGCACCGCCTACTCCCCCTACTCCCCCTTGCCGCCGCCGCCT
CCTCCTCCTCCTCCTGGTCCCAAGTTAGCATCACCCAAGCCGACAACGGG
CAGCAACCCCCGCCCATCATGTCTGCTATCACCGGTGCCTTTGCCAATGG
CACCCAGTTCCTGATTTTCGGTGGCTGCACAAGCTCATGTTGTTTTGCCC
CCATCGACGCTCAATGGACACTCGACCTCACCCAGGACCTGACGCAGGGC
ACCTGGTCTAAACGCATCCCTCACTCCGGCTCTTTGACCGCGATGTCCGC
CGTTCCTTCCGCCCGCTTCGGCGCCGCTAGCACCGTGGATTCAACGAAGG
ACATTCTCTATGCCTTTGGCGGACAAGACTCTTCTCAAGCTTTTCTTGGG
GACTTGTACAAGTTCGAGGCACGCACGCAGGAATGGACCGAAATCAAGCC
TTCAATCTTTTCTGAAACTTCCACGTTGTCTTTTCAACGGCCACCTGCTC
CAAGAGCAGCGGCTTCCTTGTCCGTCGTCCGGGGAGGAGTGGGAGGAGGA
CGGGAGGGAGGGAGGGGACAGGAGAAGCACCTAGTTTTAATTGGGGGCTT
TGGCCGGCAGGGTGCAAAAGAAGATGAGGTTTGGGGTTTGAAATTGTCTG
GTACTGGAAGACAAATGGAAAACGGCTGGGTACGTCTTGTTCCCTCATCT
TCTACTGATGTGAGGGAGGTGGAGGAGGGGAAGGAGGAAGGCACTCCCTC
TCGCTCCACGTCAAGGGGGCTGCCCGCACGGTGGCATCACGTTGCGGTGC
CCGTCAAGATCCCTAACATCACCCCCTCTCCCTCCTCTTCCTCGCCTTCC
TTCCCATGCGAGGAAGGGAGGGGACAAAAGGATGCTTTGGTCATCGTGGG
AGGGTCCGACGCAACCGGGCAAGATCACAACGAGGCCTTGCTTGTGGAGA
TTGACTGGGAGGAAGGCACCTACACATGGCGGGTCTTGGCGGCAGAAACA
GAGGAGAAGGAGCAGGACGAAAGGAGCCGACCGCCCGTCAGGCAGTAAGT
TTTTCGTGTGGGAGGAGAATGGCGGGTGTGTTGAAACAGAGGATGATCGT
CCCTGTAGTGCGATTGCCTGTTCTGTTTGCACGCCATAATTTCATTGGAA
CGATGACATAATTTACACGCATGGCTTTCACCCTTCCACACATTTACCAC
ACTTCTTTCCCTCTCCCTCCCTCCCGTCCCACTTCCTCAAACCCCACAGC
GGCCACCTCGC

protein sequence of jgi.p|Nanoce1779_2|39305

>mRNA_5865-protein ID=mRNA_5865-protein|Name=jgi.p|Nanoce1779_2|39305|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MHRLLPLLPLAAAASSSSSWSQVSITQADNGQQPPPIMSAITGAFANGTQ
FLIFGGCTSSCCFAPIDAQWTLDLTQDLTQGTWSKRIPHSGSLTAMSAVP
SARFGAASTVDSTKDILYAFGGQDSSQAFLGDLYKFEARTQEWTEIKPSI
FSETSTLSFQRPPAPRAAASLSVVRGGVGGGREGGRGQEKHLVLIGGFGR
QGAKEDEVWGLKLSGTGRQMENGWVRLVPSSSTDVREVEEGKEEGTPSRS
TSRGLPARWHHVAVPVKIPNITPSPSSSSPSFPCEEGRGQKDALVIVGGS
DATGQDHNEALLVEIDWEEGTYTWRVLAAETEEKEQDERSRPPVRQ*

mRNA from alignment at scaffold_11:770470..772130+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5865 ID=mRNA_5865|Name=jgi.p|Nanoce1779_2|39305|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp|location=Sequence derived from alignment at scaffold_11:770470..772130+ (Nannochloropsis oceanica)
TAAATTTGTCAGATGCGGGGTTGATAAACTGTTCTACTTGAAGAGGTCTC
CTCGGAGGGATGTACAAGTGAGGTTCGTCTCGGCCAAAACCCATCGATAT
GGGACCTAGGAAAAACATGCCAACACCATCATCACGTGGAGTGCTTATGT
TTTCACTTGAAAGAATGGTTGGCATGCTTGTGATGATGTGATGGTCGGGG
TGGACACAAAAATTACTTCACATGCAGGAGCAGGGGAACATGCGAATTAA
CCGAGGAGCGAGCTCCTCCGATCCGGTCGTCGTAAAATGTTTGGGATTGC
ATCACATACACGATGCATTTACAATGTCTCACGCACCCATAGTTGGCATG
GTCTGTTTTCTTATCGACTGATCCCCTTGCACAGGCCAGCGTCAAATCAA
TCAAGCTATGCACCGCCTACTCCCCCTACTCCCCCTTGCCGCCGCCGCCT
CCTCCTCCTCCTCCTGGTCCCAAGTTAGCATCACCCAAGCCGACAACGGG
CAGCAACCCCCGCCCATCATGTCTGCTATCACCGGTGCCTTTGCCAATGG
CACCCAGTTCCTGATTTTCGGTGGCTGCACAAGCTCATGTTGTTTTGCCC
CCATCGACGCTCAATGGACACTCGACCTCACCCAGGACCTGACGCAGGGC
ACCTGGTCTAAACGCATCCCTCACTCCGGCTCTTTGACCGCGATGTCCGC
CGTTCCTTCCGCCCGCTTCGGCGCCGCTAGCACCGTGGATTCAACGAAGG
ACATTCTCTATGCCTTTGGCGGACAAGACTCTTCTCAAGCTTTTCTTGGG
GACTTGTACAAGTTCGAGGCACGCACGCAGGAATGGACCGAAATCAAGCC
TTCAATCTTTTCTGAAACTTCCACGTTGTCTTTTCAACGGCCACCTGCTC
CAAGAGCAGCGGCTTCCTTGTCCGTCGTCCGGGGAGGAGTGGGAGGAGGA
CGGGAGGGAGGGAGGGGACAGGAGAAGCACCTAGTTTTAATTGGGGGCTT
TGGCCGGCAGGGTGCAAAAGAAGATGAGGTTTGGGGTTTGAAATTGTCTG
GTACTGGAAGACAAATGGAAAACGGCTGGGTACGTCTTGTTCCCTCATCT
TCTACTGATGTGAGGGAGGTGGAGGAGGGGAAGGAGGAAGGCACTCCCTC
TCGCTCCACGTCAAGGGGGCTGCCCGCACGGTGGCATCACGTTGCGGTGC
CCGTCAAGATCCCTAACATCACCCCCTCTCCCTCCTCTTCCTCGCCTTCC
TTCCCATGCGAGGAAGGGAGGGGACAAAAGGATGCTTTGGTCATCGTGGG
AGGGTCCGACGCAACCGGGCAAGATCACAACGAGGCCTTGCTTGTGGAGA
TTGACTGGGAGGAAGGCACCTACACATGGCGGGTCTTGGCGGCAGAAACA
GAGGAGAAGGAGCAGGACGAAAGGAGCCGACCGCCCGTCAGGCAGTAAGT
TTTTCGTGTGGGAGGAGAATGGCGGGTGTGTTGAAACAGAGGATGATCGT
CCCTGTAGTGCGATTGCCTGTTCTGTTTGCACGCCATAATTTCATTGGAA
CGATGACATAATTTACACGCATGGCTTTCACCCTTCCACACATTTACCAC
ACTTCTTTCCCTCTCCCTCCCTCCCGTCCCACTTCCTCAAACCCCACAGC
GGCCACCTCGC

Coding sequence (CDS) from alignment at scaffold_11:770470..772130+

>mRNA_5865 ID=mRNA_5865|Name=jgi.p|Nanoce1779_2|39305|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at scaffold_11:770470..772130+ (Nannochloropsis oceanica)
ATGCACCGCCTACTCCCCCTACTCCCCCTTGCCGCCGCCGCCTCCTCCTC
CTCCTCCTGGTCCCAAGTTAGCATCACCCAAGCCGACAACGGGCAGCAAC
CCCCGCCCATCATGTCTGCTATCACCGGTGCCTTTGCCAATGGCACCCAG
TTCCTGATTTTCGGTGGCTGCACAAGCTCATGTTGTTTTGCCCCCATCGA
CGCTCAATGGACACTCGACCTCACCCAGGACCTGACGCAGGGCACCTGGT
CTAAACGCATCCCTCACTCCGGCTCTTTGACCGCGATGTCCGCCGTTCCT
TCCGCCCGCTTCGGCGCCGCTAGCACCGTGGATTCAACGAAGGACATTCT
CTATGCCTTTGGCGGACAAGACTCTTCTCAAGCTTTTCTTGGGGACTTGT
ACAAGTTCGAGGCACGCACGCAGGAATGGACCGAAATCAAGCCTTCAATC
TTTTCTGAAACTTCCACGTTGTCTTTTCAACGGCCACCTGCTCCAAGAGC
AGCGGCTTCCTTGTCCGTCGTCCGGGGAGGAGTGGGAGGAGGACGGGAGG
GAGGGAGGGGACAGGAGAAGCACCTAGTTTTAATTGGGGGCTTTGGCCGG
CAGGGTGCAAAAGAAGATGAGGTTTGGGGTTTGAAATTGTCTGGTACTGG
AAGACAAATGGAAAACGGCTGGGTACGTCTTGTTCCCTCATCTTCTACTG
ATGTGAGGGAGGTGGAGGAGGGGAAGGAGGAAGGCACTCCCTCTCGCTCC
ACGTCAAGGGGGCTGCCCGCACGGTGGCATCACGTTGCGGTGCCCGTCAA
GATCCCTAACATCACCCCCTCTCCCTCCTCTTCCTCGCCTTCCTTCCCAT
GCGAGGAAGGGAGGGGACAAAAGGATGCTTTGGTCATCGTGGGAGGGTCC
GACGCAACCGGGCAAGATCACAACGAGGCCTTGCTTGTGGAGATTGACTG
GGAGGAAGGCACCTACACATGGCGGGTCTTGGCGGCAGAAACAGAGGAGA
AGGAGCAGGACGAAAGGAGCCGACCGCCCGTCAGGCAGTAA

Synonyms

Publications