jgi.p|Nanoce1779_2|590582, mRNA_5861 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590582
Unique NamemRNA_5861
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length726
Alignment locationscaffold_11:760444..761363 +

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Properties
Property NameValue
TranscriptId590668
TrackFilteredModels2
ProteinId590582
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:760444..761363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590582gene_5861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590582mRNA_5861-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5861CDS_5861Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5861 ID=mRNA_5861|Name=jgi.p|Nanoce1779_2|590582|organism=Nannochloropsis oceanica|type=mRNA|length=726bp
CGAAGTGTCTTTGCTCCCGCCAGGGGGGCGGGAAGGAGGGATGGGGGGAG
GGATGGTGAACATGGATGCGTTGGTGATGGGGAATGAGGGGGTGTTGCCT
CCAGGCGTGGATGGATTGCTCGGCGTGGTGTGGATGAGGTTCTTCGGCAT
TGTCGACTTTTCGTGGGCCAGCCAAACACTCACTGTCTACCCCTATGACG
TGCGAGGCCCGGGGGGAGGAAGCAGGGTGGGAGGGCTAGAGGTGATTTTG
GAGGATCCGCAGCCAACGTTGCTATCGAGGGGGGTAACCATGAGGCAGGA
TCCGATGAGTGGGCTGCATTTCGTGGATTTAACGTTGAGCACGGGTGGCA
GCCCTGTCCCAGCCCTGGTGGACCTGGGCGCCGGCATGAGTATAGTTAAT
TGGCGGGCCGCGAGGCAAGCCGGAATCGAAAGAGAAACCAGCCCTCGGGT
GATACGAAACGCGATGAGTGTCTGGGGCATCGACGGCACAGCCATGCCCG
TCGATTTGTGTGACTTTGAGTGCTTGAGTTTGGAAAAAGGCGTGAGTCTG
ACGCGGAGGAGGATAGGCGTGGCAGACTTACCTGCGTTTGGATTGATCGG
CTATGGGCAACGACCGGTGGGGGTGGTGGGGATGGATGTATTGGGAGGGA
CGGATCCGAACAGCAGAAGGATTGTGTTTGACTTTCGACGTAATCAGTTG
TACACCATGTGAGCAAGGGAGAGGCT
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protein sequence of jgi.p|Nanoce1779_2|590582

>mRNA_5861-protein ID=mRNA_5861-protein|Name=jgi.p|Nanoce1779_2|590582|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MGGGMVNMDALVMGNEGVLPPGVDGLLGVVWMRFFGIVDFSWASQTLTVY
PYDVRGPGGGSRVGGLEVILEDPQPTLLSRGVTMRQDPMSGLHFVDLTLS
TGGSPVPALVDLGAGMSIVNWRAARQAGIERETSPRVIRNAMSVWGIDGT
AMPVDLCDFECLSLEKGVSLTRRRIGVADLPAFGLIGYGQRPVGVVGMDV
LGGTDPNSRRIVFDFRRNQLYTM*
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mRNA from alignment at scaffold_11:760444..761363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5861 ID=mRNA_5861|Name=jgi.p|Nanoce1779_2|590582|organism=Nannochloropsis oceanica|type=mRNA|length=920bp|location=Sequence derived from alignment at scaffold_11:760444..761363+ (Nannochloropsis oceanica)
CGAAGTGTCTTTGCTCCCGCCAGGGGGGCGGGAAGGAGGGATGGGGGGAG
GGATGGTGAACATGGATGCGTTGGTGATGGGGAATGAGGGGGTGTTGCCT
CCAGGCGTGGATGGATTGCTCGGCGTGGTGTGGATGAGGTTCTTCGGCAT
TGTCGACTTTTCGTGGGCCAGCCAAACACTCACTGTCTACCCCTATGACG
TGCGAGGCCCGGGGGGAGGAAGCAGGGTGGGAGGGCTAGAGGTGATTTTG
GAGGATCCGCAGCCAACGTTGCTATCGAGGGGGGTAACCATGAGGCAGGA
TCCGATGAGTGGGCTGCATTTCGTGGATTTAACGTTGAGCACGGGTGGCA
GCCCTGTCCCAGCCCTGGTGGACCTGGGCGCCGGCATGAGTATAGTTAAT
TGGCGGGCCGCGAGGCAAGCCGGAATCGAAAGGTAAGTTTTTTTCTTTTT
TTCTTTCCTTCCTTTCCTTTTTCTTCCTTCGTTAGTTGTTTCGATCTTGG
CTTTGGTGTAAAACGGCGCAGTGATGAGTATGGTAACCCTAGCCCTAACC
TTTTCTTCTATCCGCCCCTTCCTCCTTCCCTCCTCGTTCACAACTGACCG
CTCCCTCGTTCCTACCCTCCCTGTAGAGAAACCAGCCCTCGGGTGATACG
AAACGCGATGAGTGTCTGGGGCATCGACGGCACAGCCATGCCCGTCGATT
TGTGTGACTTTGAGTGCTTGAGTTTGGAAAAAGGCGTGAGTCTGACGCGG
AGGAGGATAGGCGTGGCAGACTTACCTGCGTTTGGATTGATCGGCTATGG
GCAACGACCGGTGGGGGTGGTGGGGATGGATGTATTGGGAGGGACGGATC
CGAACAGCAGAAGGATTGTGTTTGACTTTCGACGTAATCAGTTGTACACC
ATGTGAGCAAGGGAGAGGCT
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Coding sequence (CDS) from alignment at scaffold_11:760444..761363+

>mRNA_5861 ID=mRNA_5861|Name=jgi.p|Nanoce1779_2|590582|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_11:760444..761363+ (Nannochloropsis oceanica)
ATGGGGGGAGGGATGGTGAACATGGATGCGTTGGTGATGGGGAATGAGGG
GGTGTTGCCTCCAGGCGTGGATGGATTGCTCGGCGTGGTGTGGATGAGGT
TCTTCGGCATTGTCGACTTTTCGTGGGCCAGCCAAACACTCACTGTCTAC
CCCTATGACGTGCGAGGCCCGGGGGGAGGAAGCAGGGTGGGAGGGCTAGA
GGTGATTTTGGAGGATCCGCAGCCAACGTTGCTATCGAGGGGGGTAACCA
TGAGGCAGGATCCGATGAGTGGGCTGCATTTCGTGGATTTAACGTTGAGC
ACGGGTGGCAGCCCTGTCCCAGCCCTGGTGGACCTGGGCGCCGGCATGAG
TATAGTTAATTGGCGGGCCGCGAGGCAAGCCGGAATCGAAAGAGAAACCA
GCCCTCGGGTGATACGAAACGCGATGAGTGTCTGGGGCATCGACGGCACA
GCCATGCCCGTCGATTTGTGTGACTTTGAGTGCTTGAGTTTGGAAAAAGG
CGTGAGTCTGACGCGGAGGAGGATAGGCGTGGCAGACTTACCTGCGTTTG
GATTGATCGGCTATGGGCAACGACCGGTGGGGGTGGTGGGGATGGATGTA
TTGGGAGGGACGGATCCGAACAGCAGAAGGATTGTGTTTGACTTTCGACG
TAATCAGTTGTACACCATGTGAATGGGGGGAGGGATGGTGAACATGGATG
CGTTGGTGATGGGGAATGAGGGGGTGTTGCCTCCAGGCGTGGATGGATTG
CTCGGCGTGGTGTGGATGAGGTTCTTCGGCATTGTCGACTTTTCGTGGGC
CAGCCAAACACTCACTGTCTACCCCTATGACGTGCGAGGCCCGGGGGGAG
GAAGCAGGGTGGGAGGGCTAGAGGTGATTTTGGAGGATCCGCAGCCAACG
TTGCTATCGAGGGGGGTAACCATGAGGCAGGATCCGATGAGTGGGCTGCA
TTTCGTGGATTTAACGTTGAGCACGGGTGGCAGCCCTGTCCCAGCCCTGG
TGGACCTGGGCGCCGGCATGAGTATAGTTAATTGGCGGGCCGCGAGGCAA
GCCGGAATCGAAAGAGAAACCAGCCCTCGGGTGATACGAAACGCGATGAG
TGTCTGGGGCATCGACGGCACAGCCATGCCCGTCGATTTGTGTGACTTTG
AGTGCTTGAGTTTGGAAAAAGGCGTGAGTCTGACGCGGAGGAGGATAGGC
GTGGCAGACTTACCTGCGTTTGGATTGATCGGCTATGGGCAACGACCGGT
GGGGGTGGTGGGGATGGATGTATTGGGAGGGACGGATCCGAACAGCAGAA
GGATTGTGTTTGACTTTCGACGTAATCAGTTGTACACCATGTGA
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Synonyms
Publications