jgi.p|Nanoce1779_2|590580, mRNA_5859 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590580
Unique Name	mRNA_5859
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1375
Alignment location	scaffold_11:759094..760468 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590666
Track	FilteredModels2
ProteinId	590580

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:759094..760468 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590580	gene_5859	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590580	mRNA_5859-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5859	CDS_5859	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:759094..760468+
coding sequence from alignment at scaffold_11:759094..760468+

mRNA sequence

>mRNA_5859 ID=mRNA_5859|Name=jgi.p|Nanoce1779_2|590580|organism=Nannochloropsis oceanica|type=mRNA|length=1375bp
AGCCTAGCAATACACCCTGCATCACTTCCTCCTACAAAGCGGGCAGCCAT
GGCACCTATGTCCTTCGCTGCCTACCGAGCCCAACAAGCCGTGGTACGGG
AAGTATTCGACGAGGAGACAGGCAGGATGAGGCTGGTCAGGGGCACTGGG
GAGATAATCGAGCGAATTGTGAGCAAAGAGCAACAGCGGGCCATCAATAA
ACGGGCAACGGAAGGAGATGGACTGAGCTTCCAAGTGATGATGCGCAAAG
GTGGTGGAAAATAGAAAGGAGGATGAGAAGGAGGTGGAGGCGAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAGGATTGAGGATGAGGAGGGTCAAG
GAAAGAAGAAGGAGAAGGAGAATAATTCAAGTTACGGGCTCTCAGAGACG
ACCTGAGTGATGTCGTGACTTTGTTGTCACATTGTGGTGAGACAAGAGAG
AGATGCCCACGAGGACTAGTGGAGCGGATACAAATACGAATACTCGCGAA
AGACCGCCAAACGCGAAGAACGAAAAAGGAGGGAAGGAAACATACAACGC
CAATCCCTTCTCCCCTCCCCACACATACCCTATTTCTCTACAGGCCCACA
CAAACCGTTGCAGAGACATTTAAAACTGATGATACCGAGAAGACCGACAA
GTCCCACCGGGCAGGCCCCACGAAGTTTTTCCTTCCTTCTTCTCCTTCTC
CTTCCAGCCCTCCTTCTCCTCCTTTTCCTTAAAGAATGCCAAGCCTTTTT
TCCCCCTTCCCCTTCTTCTCTCCTTCGCCCTTCCCTCTACCCCCGCACGG
CCACGACCCTCCACTCTTCCTCCCCCCCATCTTCCTCCCCCCCCTCCTCC
CCTTCCTCTTCCTCTCCTTCCGACCTCCTCCACGAGGTCCGCAAGCTCCG
CGCCTCCGTTATCAAGTCAGAGCTCTCTACCCTCGGTGTACCGACCACAG
GCATCATCGACAAGGAAGAACTAGTTCGCCTCCTCGCCCACAACCGCCAG
CAGTTTCAACAACACCAGAAGCGTCAACAGCAACAGCAAGAAAAGCAACG
AGCCCAGGGAGGGAAGGAAGGAGGGAAGCCCTATGCCGCCCGTGTGCCCT
TTCGTCAAAAGACTCCGCCTTCTACGCTACCCGGAGGAGGACAGGCCAGC
CCCGGGCCGAAGAGCTATGTGTGCGTGGATGTGTGGGTGAAAGGCGAGAA
ACTAGAGTTTCTGATTGATTCAGGCGCGACCCCTACGATCATCACAGAGA
GGACAAGGGCGAGGTTAGGGTTGAGTGAACTTGGGGGGGGTCAAAGGATC
GAGGGTGTCACAGCCACAGGGGCAGGAGCAGCGCCTCGGGTGATGTTAAA
CGAAGTGTCTTTGCTCCCGCCAGGG

protein sequence of jgi.p|Nanoce1779_2|590580

>mRNA_5859-protein ID=mRNA_5859-protein|Name=jgi.p|Nanoce1779_2|590580|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MAPMSFAAYRAQQAVVREVFDEETGRMRLVRGTGEIIERIVSKEQQRAIN
KRATEGDGLSFQVMMRKGGGK*

mRNA from alignment at scaffold_11:759094..760468+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5859 ID=mRNA_5859|Name=jgi.p|Nanoce1779_2|590580|organism=Nannochloropsis oceanica|type=mRNA|length=1375bp|location=Sequence derived from alignment at scaffold_11:759094..760468+ (Nannochloropsis oceanica)
AGCCTAGCAATACACCCTGCATCACTTCCTCCTACAAAGCGGGCAGCCAT
GGCACCTATGTCCTTCGCTGCCTACCGAGCCCAACAAGCCGTGGTACGGG
AAGTATTCGACGAGGAGACAGGCAGGATGAGGCTGGTCAGGGGCACTGGG
GAGATAATCGAGCGAATTGTGAGCAAAGAGCAACAGCGGGCCATCAATAA
ACGGGCAACGGAAGGAGATGGACTGAGCTTCCAAGTGATGATGCGCAAAG
GTGGTGGAAAATAGAAAGGAGGATGAGAAGGAGGTGGAGGCGAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAGGATTGAGGATGAGGAGGGTCAAG
GAAAGAAGAAGGAGAAGGAGAATAATTCAAGTTACGGGCTCTCAGAGACG
ACCTGAGTGATGTCGTGACTTTGTTGTCACATTGTGGTGAGACAAGAGAG
AGATGCCCACGAGGACTAGTGGAGCGGATACAAATACGAATACTCGCGAA
AGACCGCCAAACGCGAAGAACGAAAAAGGAGGGAAGGAAACATACAACGC
CAATCCCTTCTCCCCTCCCCACACATACCCTATTTCTCTACAGGCCCACA
CAAACCGTTGCAGAGACATTTAAAACTGATGATACCGAGAAGACCGACAA
GTCCCACCGGGCAGGCCCCACGAAGTTTTTCCTTCCTTCTTCTCCTTCTC
CTTCCAGCCCTCCTTCTCCTCCTTTTCCTTAAAGAATGCCAAGCCTTTTT
TCCCCCTTCCCCTTCTTCTCTCCTTCGCCCTTCCCTCTACCCCCGCACGG
CCACGACCCTCCACTCTTCCTCCCCCCCATCTTCCTCCCCCCCCTCCTCC
CCTTCCTCTTCCTCTCCTTCCGACCTCCTCCACGAGGTCCGCAAGCTCCG
CGCCTCCGTTATCAAGTCAGAGCTCTCTACCCTCGGTGTACCGACCACAG
GCATCATCGACAAGGAAGAACTAGTTCGCCTCCTCGCCCACAACCGCCAG
CAGTTTCAACAACACCAGAAGCGTCAACAGCAACAGCAAGAAAAGCAACG
AGCCCAGGGAGGGAAGGAAGGAGGGAAGCCCTATGCCGCCCGTGTGCCCT
TTCGTCAAAAGACTCCGCCTTCTACGCTACCCGGAGGAGGACAGGCCAGC
CCCGGGCCGAAGAGCTATGTGTGCGTGGATGTGTGGGTGAAAGGCGAGAA
ACTAGAGTTTCTGATTGATTCAGGCGCGACCCCTACGATCATCACAGAGA
GGACAAGGGCGAGGTTAGGGTTGAGTGAACTTGGGGGGGGTCAAAGGATC
GAGGGTGTCACAGCCACAGGGGCAGGAGCAGCGCCTCGGGTGATGTTAAA
CGAAGTGTCTTTGCTCCCGCCAGGG

Coding sequence (CDS) from alignment at scaffold_11:759094..760468+

>mRNA_5859 ID=mRNA_5859|Name=jgi.p|Nanoce1779_2|590580|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_11:759094..760468+ (Nannochloropsis oceanica)
ATGGCACCTATGTCCTTCGCTGCCTACCGAGCCCAACAAGCCGTGGTACG
GGAAGTATTCGACGAGGAGACAGGCAGGATGAGGCTGGTCAGGGGCACTG
GGGAGATAATCGAGCGAATTGTGAGCAAAGAGCAACAGCGGGCCATCAAT
AAACGGGCAACGGAAGGAGATGGACTGAGCTTCCAAGTGATGATGCGCAA
AGGTGGTGGAAAATAG

Synonyms

Publications