jgi.p|Nanoce1779_2|590576, mRNA_5858 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590576
Unique Name	mRNA_5858
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	889
Alignment location	scaffold_11:757513..758401 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590662
Track	FilteredModels2
ProteinId	590576

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:757513..758401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590576	gene_5858	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590576	mRNA_5858-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5858	CDS_5858	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:757513..758401+
coding sequence from alignment at scaffold_11:757513..758401+

mRNA sequence

>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Nanoce1779_2|590576|organism=Nannochloropsis oceanica|type=mRNA|length=889bp
TGGCCTTCTTGTCTTCGTCGGTACTCCCCTGTTGCTGTTGATCTGCTTCC
TCCTCCTCCTGTTGCTGCTGCTGCTGCTGCTGCTGCCGTTGCCTATGCTG
TTTTTTTTTCTTAGCTTCTGCCGCGAAGGACTTGACTAAGGGAGCAAATG
AATATCGGGTGTACTGCTGCAGCAGGGCAAACATGGACTGGACCGACGCT
CCAGGCGTGCCGGATGCAGAACCCGTGGTCATTGTCGTCGCCGTGACACT
GCTGGTGCTTGTGCCGGTGCCAGTGTTGGAGCTACTTCTGCTGACTGTTT
CCGAGGACCCGCCCCCCAAAGTGATGACCTGCAATTGGTTGCTGATTGGG
CTGCCGTCGTCGAGCGGCTCGAGGGCGCGTTTGATAAAAGCCAATACCAA
CCCTCCGCTGGTGGCGGCCGAAGAACATGAGGAAGAGGAGGAGGTAACGG
AAGTTGAAAAAGGGAGCACTGTCACCATTCCTTCCTCCTCTTCACAACCT
CCAAAATCCAATGCTAAGGTATATCGTTGTCCTCCCCCCCGCTTACAATC
TCCTGGTAACGAAGACGCTTCGAAATACAGGGCAGGCACCCGGGCATCCG
CGACGAAGCGGGAGGCCATTTCTTTCGCCTCCAGGCTTTCTAGCGCTTCT
GCCATGCATTTATCGGGCTCCGGCAATTCAAACAGGACGCGGGCTGCGGC
TGCTCCGATGTAGGCACGCAGGCGGGAGGCCAGGGTGTCAGTCGTAGCGG
AAGAGGGGTGAGAGGAGGAAGAAGACAAAGCCTCATGCTGCTCGTCGGGA
GGCGGGGAAACTGGCATGTGATCGGCTGCGTCGTCCATAGCTTGCTTGAG
CAATGATAAGACTAGTCCGGTGTCTGTCTTAAGCTGTGA

protein sequence of jgi.p|Nanoce1779_2|590576

>mRNA_5858-protein ID=mRNA_5858-protein|Name=jgi.p|Nanoce1779_2|590576|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MDWTDAPGVPDAEPVVIVVAVTLLVLVPVPVLELLLLTVSEDPPPKVMTC
NWLLIGLPSSSGSRARLIKANTNPPLVAAEEHEEEEEVTEVEKGSTVTIP
SSSSQPPKSNAKVYRCPPPRLQSPGNEDASKYRAGTRASATKREAISFAS
RLSSASAMHLSGSGNSNRTRAAAAPM*

mRNA from alignment at scaffold_11:757513..758401+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Nanoce1779_2|590576|organism=Nannochloropsis oceanica|type=mRNA|length=889bp|location=Sequence derived from alignment at scaffold_11:757513..758401+ (Nannochloropsis oceanica)
TGGCCTTCTTGTCTTCGTCGGTACTCCCCTGTTGCTGTTGATCTGCTTCC
TCCTCCTCCTGTTGCTGCTGCTGCTGCTGCTGCTGCCGTTGCCTATGCTG
TTTTTTTTTCTTAGCTTCTGCCGCGAAGGACTTGACTAAGGGAGCAAATG
AATATCGGGTGTACTGCTGCAGCAGGGCAAACATGGACTGGACCGACGCT
CCAGGCGTGCCGGATGCAGAACCCGTGGTCATTGTCGTCGCCGTGACACT
GCTGGTGCTTGTGCCGGTGCCAGTGTTGGAGCTACTTCTGCTGACTGTTT
CCGAGGACCCGCCCCCCAAAGTGATGACCTGCAATTGGTTGCTGATTGGG
CTGCCGTCGTCGAGCGGCTCGAGGGCGCGTTTGATAAAAGCCAATACCAA
CCCTCCGCTGGTGGCGGCCGAAGAACATGAGGAAGAGGAGGAGGTAACGG
AAGTTGAAAAAGGGAGCACTGTCACCATTCCTTCCTCCTCTTCACAACCT
CCAAAATCCAATGCTAAGGTATATCGTTGTCCTCCCCCCCGCTTACAATC
TCCTGGTAACGAAGACGCTTCGAAATACAGGGCAGGCACCCGGGCATCCG
CGACGAAGCGGGAGGCCATTTCTTTCGCCTCCAGGCTTTCTAGCGCTTCT
GCCATGCATTTATCGGGCTCCGGCAATTCAAACAGGACGCGGGCTGCGGC
TGCTCCGATGTAGGCACGCAGGCGGGAGGCCAGGGTGTCAGTCGTAGCGG
AAGAGGGGTGAGAGGAGGAAGAAGACAAAGCCTCATGCTGCTCGTCGGGA
GGCGGGGAAACTGGCATGTGATCGGCTGCGTCGTCCATAGCTTGCTTGAG
CAATGATAAGACTAGTCCGGTGTCTGTCTTAAGCTGTGA

Coding sequence (CDS) from alignment at scaffold_11:757513..758401+

>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Nanoce1779_2|590576|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_11:757513..758401+ (Nannochloropsis oceanica)
ATGGACTGGACCGACGCTCCAGGCGTGCCGGATGCAGAACCCGTGGTCAT
TGTCGTCGCCGTGACACTGCTGGTGCTTGTGCCGGTGCCAGTGTTGGAGC
TACTTCTGCTGACTGTTTCCGAGGACCCGCCCCCCAAAGTGATGACCTGC
AATTGGTTGCTGATTGGGCTGCCGTCGTCGAGCGGCTCGAGGGCGCGTTT
GATAAAAGCCAATACCAACCCTCCGCTGGTGGCGGCCGAAGAACATGAGG
AAGAGGAGGAGGTAACGGAAGTTGAAAAAGGGAGCACTGTCACCATTCCT
TCCTCCTCTTCACAACCTCCAAAATCCAATGCTAAGGTATATCGTTGTCC
TCCCCCCCGCTTACAATCTCCTGGTAACGAAGACGCTTCGAAATACAGGG
CAGGCACCCGGGCATCCGCGACGAAGCGGGAGGCCATTTCTTTCGCCTCC
AGGCTTTCTAGCGCTTCTGCCATGCATTTATCGGGCTCCGGCAATTCAAA
CAGGACGCGGGCTGCGGCTGCTCCGATGTAG

Synonyms

Publications