jgi.p|Nanoce1779_2|590561, mRNA_5856 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590561
Unique NamemRNA_5856
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1704
Alignment locationscaffold_11:739707..741410 -

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Properties
Property NameValue
TranscriptId590647
TrackFilteredModels2
ProteinId590561
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:739707..741410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590561gene_5856Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590561mRNA_5856-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5856CDS_5856Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5856 ID=mRNA_5856|Name=jgi.p|Nanoce1779_2|590561|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp
CAGGGGCCATGCGCCAAGCACTACCACCATTATCTCCCCTGCTCCTCCAA
CTCCTCCTCATCCTCCTCCTCGCAGTCGCCTTTGCCCCTATAGTGGTTGC
TGCGGCCACATCCTTTTCAGCGCGCAGCACCGCTGACGTCGTCCACCACC
ACCAGGGCCTTCCTTTCTTCTACCCTGCGACGGATAATGCGATTCATTGG
AGCGGCCGCGTGCTGCGAGACGATTACGGGCGCGTCACCTTCGACTGGCC
CGGTGTCACGGCATCTTTCCGCATCGAGGGCAATGCTAGCATTGTTGAGG
TGTTGGTGAACGATACCACAGTCGAGGGGACGCGCTTTGCAGTATACTTG
GACTCGCCGGGGCAAGAACAACAGCACTTGCAAACGTTCTTGACGAAACG
GGGGATCATGTACTACCCGTTGCTCAGCGGCAACAAGTTTCAAACACGAG
GGCTTGCGCTCCCTTCTGATGTCACGCTTTCGATGGTACACACGCAAGAA
TCGCGTTACCTGGCCGAGACGGCGGCAGGCGATAACGTGACAGTGGTGGG
ATTTACTACGAATGGGCTCCTGGCAAGTCCTCTTCCGGCTACACGCCGGC
TTGAATTCATTGGAGACAGCATCACAGCAGGCTATGGGGCGGATGCTGCG
GCACCGTGCCATCCCAGCGTGGTGAACAACAATTATGCCCTCACATGGGC
CCATTTGCTCTGCCAAAAGTTACGCGCCGAATGCTTCGTGGAGGCTTACT
CGGGAAGCGGTGTGATATTCAGTTACCCGGACCCAGCTTCTCCGCCTGTA
ACGATGCCCGAGCGGTATCACGATACCTTAGCCAGCAACCGCTTGAAGGG
AGAAGGAGGGCATCCCTGGGTGGTGGACATGGACGCGTTTCGTCCCGATG
CTATAGTAATAAACCTGGGCACAAATGATTTCTGTTGCGGTGGGGCCCAA
AATGCAAGCTTCGTGCAGGAATATGAAGATGCATATTTGAGCTTTGTAAT
GGGAGTGGTACAGAGCTATGCCGTGCCATCAGCAAGGGAGAGGAATGGGA
AAATGGAGGAGACGAATGAGGGATACGAGAGCGTGAGAAGAAGCGTGGAG
GTGAAGGAGGTGGGGGTGATGGCCGACTTATCGGCTTTGAGGGAGAAAGA
TGAAATGATCTATCTCCGAGCTGCGGCGTTGCGTGGCTCTCCACCATTTT
TGGCATCGTCGTTATCTTACCCTGTGGTATTTTTAGGCGTAGGCCCTATG
AGTGATCAGTACAAAGCGCCGCTTCAGCGAGTCCTCAAGCGTTTGATAAA
TCACGGCATCCGCGCGCACTACCTCGACTTGATTCTACCGCCGAACGTGG
CTATGGGAGGATGTGACAGCCATCCCAATGAGGAAGTGCATCAGCAGGTT
GCCAGACATGCATTGCCGGTGTTGGCGAGCGTGATGGGTTGGGAGGACAA
TAAACACTACTTTTGAGCGCGTTCGATACGTCCCCAAAAAATATTTTTTG
TTTCGTTTTTAATATGCAGGCTTTTGTTGGATGATGGTGTATGAAACATA
GTGCCAGCGTGGTGTGCAAAAGACGATGGGAGTGGTGAAATAAAGCAAAA
TCAAAAGTTTCTTTTCGCTGCCCTTTTGTAGGGATCAAGACGTTCAGTAG
AATTAGAGCAAAACCGGCAAGCAGTGCATGAGCAAAATGAAGCGTGATCC
TTTG
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protein sequence of jgi.p|Nanoce1779_2|590561

>mRNA_5856-protein ID=mRNA_5856-protein|Name=jgi.p|Nanoce1779_2|590561|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MRQALPPLSPLLLQLLLILLLAVAFAPIVVAAATSFSARSTADVVHHHQG
LPFFYPATDNAIHWSGRVLRDDYGRVTFDWPGVTASFRIEGNASIVEVLV
NDTTVEGTRFAVYLDSPGQEQQHLQTFLTKRGIMYYPLLSGNKFQTRGLA
LPSDVTLSMVHTQESRYLAETAAGDNVTVVGFTTNGLLASPLPATRRLEF
IGDSITAGYGADAAAPCHPSVVNNNYALTWAHLLCQKLRAECFVEAYSGS
GVIFSYPDPASPPVTMPERYHDTLASNRLKGEGGHPWVVDMDAFRPDAIV
INLGTNDFCCGGAQNASFVQEYEDAYLSFVMGVVQSYAVPSARERNGKME
ETNEGYESVRRSVEVKEVGVMADLSALREKDEMIYLRAAALRGSPPFLAS
SLSYPVVFLGVGPMSDQYKAPLQRVLKRLINHGIRAHYLDLILPPNVAMG
GCDSHPNEEVHQQVARHALPVLASVMGWEDNKHYF*
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mRNA from alignment at scaffold_11:739707..741410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5856 ID=mRNA_5856|Name=jgi.p|Nanoce1779_2|590561|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at scaffold_11:739707..741410- (Nannochloropsis oceanica)
CAGGGGCCATGCGCCAAGCACTACCACCATTATCTCCCCTGCTCCTCCAA
CTCCTCCTCATCCTCCTCCTCGCAGTCGCCTTTGCCCCTATAGTGGTTGC
TGCGGCCACATCCTTTTCAGCGCGCAGCACCGCTGACGTCGTCCACCACC
ACCAGGGCCTTCCTTTCTTCTACCCTGCGACGGATAATGCGATTCATTGG
AGCGGCCGCGTGCTGCGAGACGATTACGGGCGCGTCACCTTCGACTGGCC
CGGTGTCACGGCATCTTTCCGCATCGAGGGCAATGCTAGCATTGTTGAGG
TGTTGGTGAACGATACCACAGTCGAGGGGACGCGCTTTGCAGTATACTTG
GACTCGCCGGGGCAAGAACAACAGCACTTGCAAACGTTCTTGACGAAACG
GGGGATCATGTACTACCCGTTGCTCAGCGGCAACAAGTTTCAAACACGAG
GGCTTGCGCTCCCTTCTGATGTCACGCTTTCGATGGTACACACGCAAGAA
TCGCGTTACCTGGCCGAGACGGCGGCAGGCGATAACGTGACAGTGGTGGG
ATTTACTACGAATGGGCTCCTGGCAAGTCCTCTTCCGGCTACACGCCGGC
TTGAATTCATTGGAGACAGCATCACAGCAGGCTATGGGGCGGATGCTGCG
GCACCGTGCCATCCCAGCGTGGTGAACAACAATTATGCCCTCACATGGGC
CCATTTGCTCTGCCAAAAGTTACGCGCCGAATGCTTCGTGGAGGCTTACT
CGGGAAGCGGTGTGATATTCAGTTACCCGGACCCAGCTTCTCCGCCTGTA
ACGATGCCCGAGCGGTATCACGATACCTTAGCCAGCAACCGCTTGAAGGG
AGAAGGAGGGCATCCCTGGGTGGTGGACATGGACGCGTTTCGTCCCGATG
CTATAGTAATAAACCTGGGCACAAATGATTTCTGTTGCGGTGGGGCCCAA
AATGCAAGCTTCGTGCAGGAATATGAAGATGCATATTTGAGCTTTGTAAT
GGGAGTGGTACAGAGCTATGCCGTGCCATCAGCAAGGGAGAGGAATGGGA
AAATGGAGGAGACGAATGAGGGATACGAGAGCGTGAGAAGAAGCGTGGAG
GTGAAGGAGGTGGGGGTGATGGCCGACTTATCGGCTTTGAGGGAGAAAGA
TGAAATGATCTATCTCCGAGCTGCGGCGTTGCGTGGCTCTCCACCATTTT
TGGCATCGTCGTTATCTTACCCTGTGGTATTTTTAGGCGTAGGCCCTATG
AGTGATCAGTACAAAGCGCCGCTTCAGCGAGTCCTCAAGCGTTTGATAAA
TCACGGCATCCGCGCGCACTACCTCGACTTGATTCTACCGCCGAACGTGG
CTATGGGAGGATGTGACAGCCATCCCAATGAGGAAGTGCATCAGCAGGTT
GCCAGACATGCATTGCCGGTGTTGGCGAGCGTGATGGGTTGGGAGGACAA
TAAACACTACTTTTGAGCGCGTTCGATACGTCCCCAAAAAATATTTTTTG
TTTCGTTTTTAATATGCAGGCTTTTGTTGGATGATGGTGTATGAAACATA
GTGCCAGCGTGGTGTGCAAAAGACGATGGGAGTGGTGAAATAAAGCAAAA
TCAAAAGTTTCTTTTCGCTGCCCTTTTGTAGGGATCAAGACGTTCAGTAG
AATTAGAGCAAAACCGGCAAGCAGTGCATGAGCAAAATGAAGCGTGATCC
TTTG
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Coding sequence (CDS) from alignment at scaffold_11:739707..741410-

>mRNA_5856 ID=mRNA_5856|Name=jgi.p|Nanoce1779_2|590561|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_11:739707..741410- (Nannochloropsis oceanica)
ATGCGCCAAGCACTACCACCATTATCTCCCCTGCTCCTCCAACTCCTCCT
CATCCTCCTCCTCGCAGTCGCCTTTGCCCCTATAGTGGTTGCTGCGGCCA
CATCCTTTTCAGCGCGCAGCACCGCTGACGTCGTCCACCACCACCAGGGC
CTTCCTTTCTTCTACCCTGCGACGGATAATGCGATTCATTGGAGCGGCCG
CGTGCTGCGAGACGATTACGGGCGCGTCACCTTCGACTGGCCCGGTGTCA
CGGCATCTTTCCGCATCGAGGGCAATGCTAGCATTGTTGAGGTGTTGGTG
AACGATACCACAGTCGAGGGGACGCGCTTTGCAGTATACTTGGACTCGCC
GGGGCAAGAACAACAGCACTTGCAAACGTTCTTGACGAAACGGGGGATCA
TGTACTACCCGTTGCTCAGCGGCAACAAGTTTCAAACACGAGGGCTTGCG
CTCCCTTCTGATGTCACGCTTTCGATGGTACACACGCAAGAATCGCGTTA
CCTGGCCGAGACGGCGGCAGGCGATAACGTGACAGTGGTGGGATTTACTA
CGAATGGGCTCCTGGCAAGTCCTCTTCCGGCTACACGCCGGCTTGAATTC
ATTGGAGACAGCATCACAGCAGGCTATGGGGCGGATGCTGCGGCACCGTG
CCATCCCAGCGTGGTGAACAACAATTATGCCCTCACATGGGCCCATTTGC
TCTGCCAAAAGTTACGCGCCGAATGCTTCGTGGAGGCTTACTCGGGAAGC
GGTGTGATATTCAGTTACCCGGACCCAGCTTCTCCGCCTGTAACGATGCC
CGAGCGGTATCACGATACCTTAGCCAGCAACCGCTTGAAGGGAGAAGGAG
GGCATCCCTGGGTGGTGGACATGGACGCGTTTCGTCCCGATGCTATAGTA
ATAAACCTGGGCACAAATGATTTCTGTTGCGGTGGGGCCCAAAATGCAAG
CTTCGTGCAGGAATATGAAGATGCATATTTGAGCTTTGTAATGGGAGTGG
TACAGAGCTATGCCGTGCCATCAGCAAGGGAGAGGAATGGGAAAATGGAG
GAGACGAATGAGGGATACGAGAGCGTGAGAAGAAGCGTGGAGGTGAAGGA
GGTGGGGGTGATGGCCGACTTATCGGCTTTGAGGGAGAAAGATGAAATGA
TCTATCTCCGAGCTGCGGCGTTGCGTGGCTCTCCACCATTTTTGGCATCG
TCGTTATCTTACCCTGTGGTATTTTTAGGCGTAGGCCCTATGAGTGATCA
GTACAAAGCGCCGCTTCAGCGAGTCCTCAAGCGTTTGATAAATCACGGCA
TCCGCGCGCACTACCTCGACTTGATTCTACCGCCGAACGTGGCTATGGGA
GGATGTGACAGCCATCCCAATGAGGAAGTGCATCAGCAGGTTGCCAGACA
TGCATTGCCGGTGTTGGCGAGCGTGATGGGTTGGGAGGACAATAAACACT
ACTTTTGA
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Synonyms
Publications