jgi.p|Nanoce1779_2|590552, mRNA_5853 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590552
Unique Name	mRNA_5853
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1052
Alignment location	scaffold_11:732719..734157 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590638
Track	FilteredModels2
ProteinId	590552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:732719..734157 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590552	gene_5853	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590552	mRNA_5853-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5853	CDS_5853	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:732719..734157+
coding sequence from alignment at scaffold_11:732719..734157+

mRNA sequence

>mRNA_5853 ID=mRNA_5853|Name=jgi.p|Nanoce1779_2|590552|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
CAGATCTTGCCGCTCCGCGTCTGCGCCAGTCTCTGCATCCGCCTCTTAGA
ACAGTTCGTGAAAGGGCCAACCAGCCTCCCCACCCGTGCCCCCCTTCTCC
TTGAGCTTCTGTCTGTCTGTCCCCCGCAGCGACGCGATATGGAAGGCCTC
ACCCGCCTTGTGACCAATTCGCTCCGCAACCCGGGTGGCATCACCAAGCT
TTGGTCCTTCTCGTTGGCCGATCCCAGTCAAGGTCGCCGAGAAAGGCTAC
ACAAGCTCCTACTCCGTCACAACAAACTGTCGGGTACGCGCTTTGTTGTG
TTGGATGGGATCGAAGTGCCAGGCACAAGAGGTGTGACCTCCTTGATGAA
TGCTGTAGAGATTTTGTTCAAAATCGACGGGGAGACAGCAATGGTGACCA
TTACGCCAGATTTGGGTGCCGGGGGGTTTATCTACAGTTGTCGCGTCGGT
GCGCGCCTTCTGACCGAACAGGCCGACACATTGGAGGCGTCTGACTTGAG
CAGCACCAGCCTCCACACTCCCAATAGCAAGGGGAACGGCAGCAGCAGCA
ATGACAGCCATGGCAGCGGCAGTAGTGGCGAAGGCAGAGTACCTGTCCAA
GTAATGGTGCCTGAAATCCGAACGCAGTCGAGTGAAGGAAAACTCATCGT
GCACTACAAGGTGGTTTGCGCATTGTCGGGGGGGAAAGGGGAGACGGGAA
GGGATGGGGCGGTGGTCGTCTTTCGGCGGTATCGTGATTTTGATAAATTA
GACCGGCTGGTGCGGTCGGCGTTTGCGGGCTCCCATTTATTGAACAGTCT
CCCGAATCTCCCGATCAAGATCTTGAACCCCTTCACTGACCAGTCCGACC
CGGCGTTCATCGACAATCGACGACAAGAGCTCGAGGTGTACTTGAAGCGG
TTGATACGGATGCCCAAGGCGTCAAACAACCCCGATTTGCTCCGTTTCTT
TTCGTTACACCCTGTGAGTGGGCAGCCGTTGGACCCCGGCGATTTGAACA
TGCACGTGGAGCTGAAATTCTAGAACGAAGGGAGGGAGGGAGGGTGTGTG
TG

protein sequence of jgi.p|Nanoce1779_2|590552

>mRNA_5853-protein ID=mRNA_5853-protein|Name=jgi.p|Nanoce1779_2|590552|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MEGLTRLVTNSLRNPGGITKLWSFSLADPSQGRRERLHKLLLRHNKLSGT
RFVVLDGIEVPGTRGVTSLMNAVEILFKIDGETAMVTITPDLGAGGFIYS
CRVGARLLTEQADTLEASDLSSTSLHTPNSKGNGSSSNDSHGSGSSGEGR
VPVQVMVPEIRTQSSEGKLIVHYKVVCALSGGKGETGRDGAVVVFRRYRD
FDKLDRLVRSAFAGSHLLNSLPNLPIKILNPFTDQSDPAFIDNRRQELEV
YLKRLIRMPKASNNPDLLRFFSLHPVSGQPLDPGDLNMHVELKF*

mRNA from alignment at scaffold_11:732719..734157+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5853 ID=mRNA_5853|Name=jgi.p|Nanoce1779_2|590552|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_11:732719..734157+ (Nannochloropsis oceanica)
CAGATCTTGCCGCTCCGCGTCTGCGCCAGTCTCTGCATCCGCCTCTTAGA
ACAGTTCGTGAAAGGGCCAACCAGCCTCCCCACCCGTGCCCCCCTTCTCC
TTGAGCTTCTGTCTGTCTGTCCCCCGCAGCGACGCGATATGGAAGGCCTC
ACCCGCCTTGTGACCAATTCGCTCCGCAACCCGGGTGGCATCACCAAGCT
TTGGTCCTTCTCGTTGGCCGATCCCAGTCAAGGTCGCCGAGAAAGGCTAC
ACAAGGTAAGCATCTGGTTTTGCTGGGGCAGGAGGGATGCGTGGGAGGAA
GGAAAGATGGAGGGAGGGAGGAGAAGGACGTGTAGATCTCCAAGCTATGG
GCTGCATCGAGGGCGGCAATGAATCCAATACTTATTTCCCCCCCCCTTTC
TCCCTCCTTTCCGTCGCTTCTACAGCTCCTACTCCGTCACAACAAACTGT
CGGGTACGCGCTTTGTTGTGTTGGATGGGATCGAAGTGCCAGGCACAAGA
GGTGTGACCTCCTTGATGAATGCTGTAGAGATTTTGTTCAAAATCGACGG
GGAGACAGCAATGGTGACCATTACGCCAGATTTGGGTGCCGGGGGGTTTA
TCTACAGGTGAGGGTGTGAGGGAGAGGAACAATATGTGAAGGCCACAGTA
ATTAATTGGTCTAACATATAAATAAAATACGTACTCCTTTTAGTTTTCAT
GAGCGGCCAGCAGCCTACCATATCCCTGACTATTATTTCCTTCCTTCTTT
TCCTCTTCCCTTCTCTATTTCTCTGTCCCCGATTCCCGCTTTTCCTTCCT
CCCTTCTTCCCTCTTTTCCCTTAGTTGTCGCGTCGGTGCGCGCCTTCTGA
CCGAACAGGCCGACACATTGGAGGCGTCTGACTTGAGCAGCACCAGCCTC
CACACTCCCAATAGCAAGGGGAACGGCAGCAGCAGCAATGACAGCCATGG
CAGCGGCAGTAGTGGCGAAGGCAGAGTACCTGTCCAAGTAATGGTGCCTG
AAATCCGAACGCAGTCGAGTGAAGGAAAACTCATCGTGCACTACAAGGTG
GTTTGCGCATTGTCGGGGGGGAAAGGGGAGACGGGAAGGGATGGGGCGGT
GGTCGTCTTTCGGCGGTATCGTGATTTTGATAAATTAGACCGGCTGGTGC
GGTCGGCGTTTGCGGGCTCCCATTTATTGAACAGTCTCCCGAATCTCCCG
ATCAAGATCTTGAACCCCTTCACTGACCAGTCCGACCCGGCGTTCATCGA
CAATCGACGACAAGAGCTCGAGGTGTACTTGAAGCGGTTGATACGGATGC
CCAAGGCGTCAAACAACCCCGATTTGCTCCGTTTCTTTTCGTTACACCCT
GTGAGTGGGCAGCCGTTGGACCCCGGCGATTTGAACATGCACGTGGAGCT
GAAATTCTAGAACGAAGGGAGGGAGGGAGGGTGTGTGTG

Coding sequence (CDS) from alignment at scaffold_11:732719..734157+

>mRNA_5853 ID=mRNA_5853|Name=jgi.p|Nanoce1779_2|590552|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_11:732719..734157+ (Nannochloropsis oceanica)
ATGGAAGGCCTCACCCGCCTTGTGACCAATTCGCTCCGCAACCCGGGTGG
CATCACCAAGCTTTGGTCCTTCTCGTTGGCCGATCCCAGTCAAGGTCGCC
GAGAAAGGCTACACAAGCTCCTACTCCGTCACAACAAACTGTCGGGTACG
CGCTTTGTTGTGTTGGATGGGATCGAAGTGCCAGGCACAAGAGGTGTGAC
CTCCTTGATGAATGCTGTAGAGATTTTGTTCAAAATCGACGGGGAGACAG
CAATGGTGACCATTACGCCAGATTTGGGTGCCGGGGGGTTTATCTACAGT
TGTCGCGTCGGTGCGCGCCTTCTGACCGAACAGGCCGACACATTGGAGGC
GTCTGACTTGAGCAGCACCAGCCTCCACACTCCCAATAGCAAGGGGAACG
GCAGCAGCAGCAATGACAGCCATGGCAGCGGCAGTAGTGGCGAAGGCAGA
GTACCTGTCCAAGTAATGGTGCCTGAAATCCGAACGCAGTCGAGTGAAGG
AAAACTCATCGTGCACTACAAGGTGGTTTGCGCATTGTCGGGGGGGAAAG
GGGAGACGGGAAGGGATGGGGCGGTGGTCGTCTTTCGGCGGTATCGTGAT
TTTGATAAATTAGACCGGCTGGTGCGGTCGGCGTTTGCGGGCTCCCATTT
ATTGAACAGTCTCCCGAATCTCCCGATCAAGATCTTGAACCCCTTCACTG
ACCAGTCCGACCCGGCGTTCATCGACAATCGACGACAAGAGCTCGAGGTG
TACTTGAAGCGGTTGATACGGATGCCCAAGGCGTCAAACAACCCCGATTT
GCTCCGTTTCTTTTCGTTACACCCTGTGAGTGGGCAGCCGTTGGACCCCG
GCGATTTGAACATGCACGTGGAGCTGAAATTCTAGATGGAAGGCCTCACC
CGCCTTGTGACCAATTCGCTCCGCAACCCGGGTGGCATCACCAAGCTTTG
GTCCTTCTCGTTGGCCGATCCCAGTCAAGGTCGCCGAGAAAGGCTACACA
AGCTCCTACTCCGTCACAACAAACTGTCGGGTACGCGCTTTGTTGTGTTG
GATGGGATCGAAGTGCCAGGCACAAGAGGTGTGACCTCCTTGATGAATGC
TGTAGAGATTTTGTTCAAAATCGACGGGGAGACAGCAATGGTGACCATTA
CGCCAGATTTGGGTGCCGGGGGGTTTATCTACAGTTGTCGCGTCGGTGCG
CGCCTTCTGACCGAACAGGCCGACACATTGGAGGCGTCTGACTTGAGCAG
CACCAGCCTCCACACTCCCAATAGCAAGGGGAACGGCAGCAGCAGCAATG
ACAGCCATGGCAGCGGCAGTAGTGGCGAAGGCAGAGTACCTGTCCAAGTA
ATGGTGCCTGAAATCCGAACGCAGTCGAGTGAAGGAAAACTCATCGTGCA
CTACAAGGTGGTTTGCGCATTGTCGGGGGGGAAAGGGGAGACGGGAAGGG
ATGGGGCGGTGGTCGTCTTTCGGCGGTATCGTGATTTTGATAAATTAGAC
CGGCTGGTGCGGTCGGCGTTTGCGGGCTCCCATTTATTGAACAGTCTCCC
GAATCTCCCGATCAAGATCTTGAACCCCTTCACTGACCAGTCCGACCCGG
CGTTCATCGACAATCGACGACAAGAGCTCGAGGTGTACTTGAAGCGGTTG
ATACGGATGCCCAAGGCGTCAAACAACCCCGATTTGCTCCGTTTCTTTTC
GTTACACCCTGTGAGTGGGCAGCCGTTGGACCCCGGCGATTTGAACATGC
ACGTGGAGCTGAAATTCTAGATGGAAGGCCTCACCCGCCTTGTGACCAAT
TCGCTCCGCAACCCGGGTGGCATCACCAAGCTTTGGTCCTTCTCGTTGGC
CGATCCCAGTCAAGGTCGCCGAGAAAGGCTACACAAGCTCCTACTCCGTC
ACAACAAACTGTCGGGTACGCGCTTTGTTGTGTTGGATGGGATCGAAGTG
CCAGGCACAAGAGGTGTGACCTCCTTGATGAATGCTGTAGAGATTTTGTT
CAAAATCGACGGGGAGACAGCAATGGTGACCATTACGCCAGATTTGGGTG
CCGGGGGGTTTATCTACAGTTGTCGCGTCGGTGCGCGCCTTCTGACCGAA
CAGGCCGACACATTGGAGGCGTCTGACTTGAGCAGCACCAGCCTCCACAC
TCCCAATAGCAAGGGGAACGGCAGCAGCAGCAATGACAGCCATGGCAGCG
GCAGTAGTGGCGAAGGCAGAGTACCTGTCCAAGTAATGGTGCCTGAAATC
CGAACGCAGTCGAGTGAAGGAAAACTCATCGTGCACTACAAGGTGGTTTG
CGCATTGTCGGGGGGGAAAGGGGAGACGGGAAGGGATGGGGCGGTGGTCG
TCTTTCGGCGGTATCGTGATTTTGATAAATTAGACCGGCTGGTGCGGTCG
GCGTTTGCGGGCTCCCATTTATTGAACAGTCTCCCGAATCTCCCGATCAA
GATCTTGAACCCCTTCACTGACCAGTCCGACCCGGCGTTCATCGACAATC
GACGACAAGAGCTCGAGGTGTACTTGAAGCGGTTGATACGGATGCCCAAG
GCGTCAAACAACCCCGATTTGCTCCGTTTCTTTTCGTTACACCCTGTGAG
TGGGCAGCCGTTGGACCCCGGCGATTTGAACATGCACGTGGAGCTGAAAT
TCTAG

Synonyms

Publications